Wall clock time and date at job start Tue Mar 31 2020 19:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.47106 * 119.99343 * 2 1 4 4 O 1.21613 * 119.99601 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00307 * 359.97438 * 3 2 1 6 6 C 1.46503 * 120.00036 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47166 * 180.02562 * 6 5 3 8 8 H 1.09004 * 112.90752 * 316.24725 * 7 6 5 9 9 C 1.53784 * 113.61673 * 87.50094 * 7 6 5 10 10 C 1.53778 * 87.08081 * 139.98135 * 9 7 6 11 11 H 1.08999 * 113.69218 * 89.12660 * 10 9 7 12 12 N 1.46901 * 113.61376 * 220.01952 * 10 9 7 13 13 C 1.46895 * 111.00108 * 252.49669 * 12 10 9 14 14 C 1.50698 * 109.47551 * 179.97438 * 13 12 10 15 15 O 1.21296 * 119.99802 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00477 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00164 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00042 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00063 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00218 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00009 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46770 * 89.99989 * 21 19 17 23 23 H 1.48504 * 109.47124 * 209.99985 * 21 19 17 24 24 H 1.48493 * 109.47098 * 330.00160 * 21 19 17 25 25 C 1.53778 * 87.08449 * 334.56700 * 10 9 7 26 26 C 1.32990 * 120.00217 * 179.97438 * 2 1 3 27 27 C 1.51405 * 136.31259 * 179.62508 * 26 2 1 28 28 C 1.53377 * 87.51784 * 206.06367 * 27 26 2 29 29 C 1.51405 * 136.31631 * 0.02562 * 26 2 1 30 30 H 1.09007 * 109.46915 * 90.00452 * 1 2 3 31 31 H 1.09003 * 109.47117 * 209.99826 * 1 2 3 32 32 H 1.09001 * 109.47450 * 330.00167 * 1 2 3 33 33 H 0.97004 * 119.99934 * 359.97438 * 5 3 2 34 34 H 1.08996 * 109.47072 * 59.99516 * 6 5 3 35 35 H 1.09007 * 109.46579 * 299.99681 * 6 5 3 36 36 H 1.08993 * 113.61313 * 254.52732 * 9 7 6 37 37 H 1.09000 * 113.61578 * 25.43464 * 9 7 6 38 38 H 1.00899 * 111.00355 * 16.44959 * 12 10 9 39 39 H 1.09000 * 109.47418 * 300.00048 * 13 12 10 40 40 H 1.09004 * 109.47076 * 60.00056 * 13 12 10 41 41 H 0.96995 * 120.00220 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00330 * 179.97438 * 20 19 17 43 43 H 1.08998 * 113.61879 * 270.88747 * 25 10 9 44 44 H 1.08999 * 113.61887 * 139.97854 * 25 10 9 45 45 H 1.08991 * 113.56827 * 320.65077 * 27 26 2 46 46 H 1.09007 * 113.55420 * 91.38274 * 27 26 2 47 47 H 1.08999 * 113.97128 * 220.29971 * 28 27 26 48 48 H 1.09000 * 113.70795 * 88.81257 * 28 27 26 49 49 H 1.08996 * 113.55984 * 268.62263 * 29 26 2 50 50 H 1.09004 * 113.55806 * 39.36058 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2424 1.2741 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4412 -0.0005 6 6 2.3009 3.7100 -0.0011 7 6 1.3067 4.8728 -0.0010 8 1 0.4794 4.7238 -0.6950 9 6 0.8601 5.3014 1.4068 10 6 0.9479 6.7531 0.9071 11 1 0.0232 7.1195 0.4613 12 7 1.5122 7.6824 1.8950 13 6 0.4713 8.5593 2.4476 14 6 1.0862 9.4959 3.4553 15 8 2.2749 9.4390 3.6897 16 7 0.3157 10.3976 4.0953 17 6 0.8751 11.2494 5.0124 18 1 1.9334 11.1981 5.2218 19 6 0.0806 12.1786 5.6726 20 7 0.6169 12.9954 6.5514 21 14 -1.7500 12.2669 5.3111 22 1 -2.4806 11.3586 6.2312 23 1 -2.2269 13.6594 5.5081 24 1 -1.9977 11.8528 3.9067 25 6 1.9731 6.2532 -0.1243 26 6 2.1721 -1.1517 0.0005 27 6 3.6252 -1.5769 -0.0061 28 6 3.1710 -2.8819 -0.6720 29 6 1.8139 -2.6228 0.0007 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 0.5985 2.4411 -0.0013 34 1 2.9276 3.7673 -0.8910 35 1 2.9276 3.7681 0.8890 36 1 -0.1526 4.9867 1.6583 37 1 1.5843 5.0634 2.1860 38 1 1.9912 7.1828 2.6291 39 1 0.0183 9.1378 1.6424 40 1 -0.2933 7.9536 2.9343 41 1 -0.6349 10.4435 3.9076 42 1 0.0623 13.6443 7.0120 43 1 3.0015 6.2753 0.2362 44 1 1.8589 6.7068 -1.1088 45 1 4.2568 -0.9603 -0.6454 46 1 4.0421 -1.7187 0.9910 47 1 3.6837 -3.7697 -0.3017 48 1 3.1397 -2.8307 -1.7603 49 1 1.7338 -3.0516 0.9996 50 1 0.9605 -2.8635 -0.6333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707060833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:46 Heat of formation + Delta-G solvation = -13.328404 kcal Electronic energy + Delta-G solvation = -27430.778475 eV Core-core repulsion = 23459.579872 eV Total energy + Delta-G solvation = -3971.198602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.43557 -39.57934 -38.60483 -38.17691 -35.13849 -34.15758 -33.67611 -32.95312 -31.64149 -28.40526 -27.03168 -26.45888 -25.92553 -25.80626 -23.99207 -23.26394 -21.67545 -20.91592 -19.99434 -19.29202 -18.53726 -18.25284 -16.86852 -16.51025 -16.06415 -16.02841 -15.82236 -15.50019 -15.08201 -14.83440 -14.66687 -14.37794 -14.07988 -13.87219 -13.62403 -13.30626 -12.99116 -12.91430 -12.86879 -12.66164 -12.56812 -12.46141 -12.38086 -12.18630 -12.03113 -11.81917 -11.65637 -11.40432 -11.18125 -11.09849 -10.91871 -10.67034 -10.60415 -10.51069 -9.97297 -9.90511 -9.57099 -9.41835 -9.13935 -8.56888 -8.18611 -8.07575 -6.30705 -3.82160 0.98655 2.86944 2.99684 3.02341 3.06114 3.14629 3.74747 3.92503 4.06075 4.08741 4.11839 4.28920 4.34411 4.40039 4.55879 4.61904 4.65127 4.75865 4.82541 4.93777 5.04248 5.10822 5.12923 5.19823 5.20574 5.23150 5.26659 5.35885 5.43466 5.46049 5.56240 5.62092 5.63101 5.66363 5.68145 5.77375 5.79914 5.86906 5.90512 5.93910 6.00202 6.16345 6.25516 6.28535 7.17085 7.25485 7.58126 7.60351 7.99231 8.15207 8.60303 8.95533 9.42912 9.83414 10.82479 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025750 B = 0.001524 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.119310 B =18367.954710 C =18528.684945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.170 4.170 3 C 0.555 3.445 4 O -0.540 6.540 5 N -0.726 5.726 6 C 0.131 3.869 7 C -0.125 4.125 8 H 0.094 0.906 9 C -0.165 4.165 10 C 0.068 3.932 11 H 0.095 0.905 12 N -0.657 5.657 13 C 0.048 3.952 14 C 0.449 3.551 15 O -0.565 6.565 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C -0.116 4.116 26 C -0.068 4.068 27 C -0.103 4.103 28 C -0.142 4.142 29 C -0.106 4.106 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.399 0.601 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.353 0.647 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.609 -30.386 -17.120 35.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.173 4.173 3 C 0.343 3.657 4 O -0.419 6.419 5 N -0.378 5.378 6 C 0.008 3.992 7 C -0.144 4.144 8 H 0.112 0.888 9 C -0.204 4.204 10 C -0.043 4.043 11 H 0.114 0.886 12 N -0.289 5.289 13 C -0.085 4.085 14 C 0.235 3.765 15 O -0.446 6.446 16 N -0.231 5.231 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.155 4.155 26 C -0.070 4.070 27 C -0.140 4.140 28 C -0.180 4.180 29 C -0.143 4.143 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.174 0.826 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.118 0.882 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.731 -29.727 -17.245 34.569 hybrid contribution -2.588 -0.264 0.417 2.635 sum -6.319 -29.990 -16.828 34.965 Atomic orbital electron populations 1.20670 0.90507 1.02971 1.02392 1.20445 0.95820 0.91330 1.09726 1.18250 0.87220 0.83840 0.76379 1.90786 1.13528 1.87725 1.49846 1.45957 1.10399 1.05739 1.75681 1.21387 0.94203 0.81039 1.02569 1.22664 0.98849 0.94516 0.98371 0.88755 1.23850 1.01809 0.98218 0.96558 1.22996 0.97459 0.89374 0.94454 0.88649 1.60004 1.26895 1.22823 1.19135 1.21746 0.93462 0.95622 0.97678 1.19755 0.87637 0.84262 0.84882 1.90570 1.15206 1.72087 1.66775 1.42209 1.09189 1.33090 1.38566 1.19441 0.97661 1.11294 1.15014 0.86289 1.25036 0.98474 0.96191 0.96441 1.69623 1.36125 1.20582 1.25828 0.86668 0.85345 0.78735 0.78612 1.19693 1.20165 1.19490 1.23055 1.00084 0.92798 0.99552 1.23281 0.98239 0.93734 0.91772 1.22185 0.93944 0.95874 1.01976 1.22717 0.96582 0.98271 1.00388 1.22304 0.98589 0.91536 1.01846 0.91150 0.91154 0.91557 0.76533 0.91307 0.91085 0.91577 0.89490 0.82597 0.89532 0.93777 0.79714 0.91625 0.89032 0.91051 0.89595 0.88450 0.90377 0.89779 0.88172 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.57 36.01 0.34 -0.20 16 2 C -0.17 -1.40 6.00 -102.84 -0.62 -2.02 16 3 C 0.55 5.94 7.75 -12.66 -0.10 5.84 16 4 O -0.54 -7.76 15.15 5.27 0.08 -7.68 16 5 N -0.73 -6.05 5.50 -61.49 -0.34 -6.39 16 6 C 0.13 1.19 5.51 -4.04 -0.02 1.16 16 7 C -0.12 -0.96 3.75 -89.81 -0.34 -1.30 16 8 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 9 C -0.17 -1.47 7.25 -25.92 -0.19 -1.66 16 10 C 0.07 0.74 4.18 -66.90 -0.28 0.46 16 11 H 0.10 0.94 7.87 -51.93 -0.41 0.53 16 12 N -0.66 -9.93 6.24 -107.14 -0.67 -10.60 16 13 C 0.05 0.78 6.01 -4.98 -0.03 0.75 16 14 C 0.45 10.21 7.82 -10.99 -0.09 10.13 16 15 O -0.56 -15.30 15.78 5.54 0.09 -15.21 16 16 N -0.59 -14.11 5.09 -10.97 -0.06 -14.16 16 17 C -0.31 -8.69 10.16 -14.93 -0.15 -8.84 16 18 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -25.84 13.96 55.50 0.77 -25.07 16 21 Si 0.88 19.33 27.74 -169.99 -4.71 14.61 16 22 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.38 6.52 56.52 0.37 -5.02 16 25 C -0.12 -1.12 7.44 -25.92 -0.19 -1.31 16 26 C -0.07 -0.54 6.60 -100.48 -0.66 -1.20 16 27 C -0.10 -0.81 6.99 -27.56 -0.19 -1.01 16 28 C -0.14 -0.76 8.17 -26.20 -0.21 -0.98 16 29 C -0.11 -0.54 7.71 -27.41 -0.21 -0.75 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.30 7.91 -51.93 -0.41 -0.11 16 32 H 0.07 0.27 6.71 -51.93 -0.35 -0.08 16 33 H 0.40 2.32 6.57 -40.82 -0.27 2.05 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 38 H 0.35 5.61 7.89 -39.29 -0.31 5.30 16 39 H 0.09 1.27 8.13 -51.93 -0.42 0.84 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.84 7.49 -51.93 -0.39 0.45 16 46 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 47 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 407.71 15.07 6.14 6.14 Total: -1.00 -35.11 407.71 -9.95 -45.06 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -8.22 Total: 13.18 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -3.03 Total: 0.10 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.29 Total: -56.22 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.11 -9.95 -45.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707060833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.728 kcal (2) G-P(sol) polarization free energy of solvation -35.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds