Wall clock time and date at job start Tue Mar 31 2020 19:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.47106 * 119.99343 * 2 1 4 4 O 1.21613 * 119.99601 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00307 * 359.97438 * 3 2 1 6 6 C 1.46503 * 120.00036 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47166 * 180.02562 * 6 5 3 8 8 H 1.09004 * 112.90752 * 316.24725 * 7 6 5 9 9 C 1.53784 * 113.61673 * 87.50094 * 7 6 5 10 10 C 1.53778 * 87.08081 * 139.98135 * 9 7 6 11 11 H 1.08999 * 113.69218 * 89.12660 * 10 9 7 12 12 N 1.46901 * 113.61376 * 220.01952 * 10 9 7 13 13 C 1.46895 * 111.00108 * 252.49669 * 12 10 9 14 14 C 1.50698 * 109.47551 * 179.97438 * 13 12 10 15 15 O 1.21296 * 119.99802 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00477 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00164 * 179.97438 * 16 14 13 18 18 H 1.07999 * 120.00042 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00063 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00218 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00009 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46770 * 89.99989 * 21 19 17 23 23 H 1.48504 * 109.47124 * 209.99985 * 21 19 17 24 24 H 1.48493 * 109.47098 * 330.00160 * 21 19 17 25 25 C 1.53778 * 87.08449 * 334.56700 * 10 9 7 26 26 C 1.32990 * 120.00217 * 179.97438 * 2 1 3 27 27 C 1.51405 * 136.31259 * 179.62508 * 26 2 1 28 28 C 1.53377 * 87.51784 * 206.06367 * 27 26 2 29 29 C 1.51405 * 136.31631 * 0.02562 * 26 2 1 30 30 H 1.09007 * 109.46915 * 90.00452 * 1 2 3 31 31 H 1.09003 * 109.47117 * 209.99826 * 1 2 3 32 32 H 1.09001 * 109.47450 * 330.00167 * 1 2 3 33 33 H 0.97004 * 119.99934 * 359.97438 * 5 3 2 34 34 H 1.08996 * 109.47072 * 59.99516 * 6 5 3 35 35 H 1.09007 * 109.46579 * 299.99681 * 6 5 3 36 36 H 1.08993 * 113.61313 * 254.52732 * 9 7 6 37 37 H 1.09000 * 113.61578 * 25.43464 * 9 7 6 38 38 H 1.00899 * 111.00355 * 16.44959 * 12 10 9 39 39 H 1.09000 * 109.47418 * 300.00048 * 13 12 10 40 40 H 1.09004 * 109.47076 * 60.00056 * 13 12 10 41 41 H 0.96995 * 120.00220 * 0.02562 * 16 14 13 42 42 H 0.97000 * 120.00330 * 179.97438 * 20 19 17 43 43 H 1.08998 * 113.61879 * 270.88747 * 25 10 9 44 44 H 1.08999 * 113.61887 * 139.97854 * 25 10 9 45 45 H 1.08991 * 113.56827 * 320.65077 * 27 26 2 46 46 H 1.09007 * 113.55420 * 91.38274 * 27 26 2 47 47 H 1.08999 * 113.97128 * 220.29971 * 28 27 26 48 48 H 1.09000 * 113.70795 * 88.81257 * 28 27 26 49 49 H 1.08996 * 113.55984 * 268.62263 * 29 26 2 50 50 H 1.09004 * 113.55806 * 39.36058 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2424 1.2741 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4412 -0.0005 6 6 2.3009 3.7100 -0.0011 7 6 1.3067 4.8728 -0.0010 8 1 0.4794 4.7238 -0.6950 9 6 0.8601 5.3014 1.4068 10 6 0.9479 6.7531 0.9071 11 1 0.0232 7.1195 0.4613 12 7 1.5122 7.6824 1.8950 13 6 0.4713 8.5593 2.4476 14 6 1.0862 9.4959 3.4553 15 8 2.2749 9.4390 3.6897 16 7 0.3157 10.3976 4.0953 17 6 0.8751 11.2494 5.0124 18 1 1.9334 11.1981 5.2218 19 6 0.0806 12.1786 5.6726 20 7 0.6169 12.9954 6.5514 21 14 -1.7500 12.2669 5.3111 22 1 -2.4806 11.3586 6.2312 23 1 -2.2269 13.6594 5.5081 24 1 -1.9977 11.8528 3.9067 25 6 1.9731 6.2532 -0.1243 26 6 2.1721 -1.1517 0.0005 27 6 3.6252 -1.5769 -0.0061 28 6 3.1710 -2.8819 -0.6720 29 6 1.8139 -2.6228 0.0007 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 0.5985 2.4411 -0.0013 34 1 2.9276 3.7673 -0.8910 35 1 2.9276 3.7681 0.8890 36 1 -0.1526 4.9867 1.6583 37 1 1.5843 5.0634 2.1860 38 1 1.9912 7.1828 2.6291 39 1 0.0183 9.1378 1.6424 40 1 -0.2933 7.9536 2.9343 41 1 -0.6349 10.4435 3.9076 42 1 0.0623 13.6443 7.0120 43 1 3.0015 6.2753 0.2362 44 1 1.8589 6.7068 -1.1088 45 1 4.2568 -0.9603 -0.6454 46 1 4.0421 -1.7187 0.9910 47 1 3.6837 -3.7697 -0.3017 48 1 3.1397 -2.8307 -1.7603 49 1 1.7338 -3.0516 0.9996 50 1 0.9605 -2.8635 -0.6333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707060833.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:45 Heat of formation + Delta-G solvation = -39.884738 kcal Electronic energy + Delta-G solvation = -27431.930044 eV Core-core repulsion = 23459.579872 eV Total energy + Delta-G solvation = -3972.350172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18836 -40.53253 -39.91297 -39.14732 -36.25380 -35.84999 -34.69460 -33.80927 -33.65026 -29.42524 -27.89709 -27.46202 -26.54914 -26.41766 -25.62385 -23.98541 -22.49658 -21.61008 -21.35181 -20.72997 -20.08539 -19.17481 -17.77596 -17.41978 -17.21616 -17.01116 -16.70741 -16.49632 -16.38706 -16.02683 -15.63279 -15.43023 -15.22112 -14.92567 -14.62549 -14.53237 -14.15687 -14.08244 -13.77966 -13.60982 -13.34853 -13.34430 -13.28225 -13.02117 -12.89148 -12.84153 -12.63278 -12.47856 -12.41601 -11.98794 -11.92638 -11.85158 -11.56178 -11.51140 -11.35760 -11.28124 -10.67031 -10.41510 -10.25170 -10.18649 -9.72948 -9.20049 -8.41332 -6.02748 0.34728 1.30611 1.36166 1.45513 1.96091 2.17082 2.23590 2.24533 2.76877 3.15201 3.36936 3.43530 3.56377 3.62297 3.66345 3.81432 3.94532 4.00102 4.05212 4.19268 4.22058 4.27986 4.41590 4.43817 4.49071 4.58298 4.68543 4.72494 4.74398 4.78718 4.83563 4.86971 4.89621 4.93650 4.99237 5.02889 5.06884 5.14231 5.23462 5.33928 5.37604 5.37900 5.50075 5.55414 5.73068 5.92867 6.18856 6.40966 6.58267 6.60250 6.88076 7.24841 7.39792 7.97089 8.76483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025750 B = 0.001524 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.119310 B =18367.954710 C =18528.684945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.182 4.182 3 C 0.544 3.456 4 O -0.589 6.589 5 N -0.711 5.711 6 C 0.134 3.866 7 C -0.102 4.102 8 H 0.124 0.876 9 C -0.159 4.159 10 C 0.065 3.935 11 H 0.119 0.881 12 N -0.680 5.680 13 C 0.063 3.937 14 C 0.445 3.555 15 O -0.618 6.618 16 N -0.590 5.590 17 C -0.332 4.332 18 H 0.052 0.948 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.229 1.229 25 C -0.121 4.121 26 C -0.083 4.083 27 C -0.117 4.117 28 C -0.133 4.133 29 C -0.092 4.092 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.415 0.585 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.343 0.657 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.391 0.609 42 H 0.279 0.721 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.114 0.886 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 -32.463 -19.198 39.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.334 3.666 4 O -0.472 6.472 5 N -0.363 5.363 6 C 0.010 3.990 7 C -0.121 4.121 8 H 0.142 0.858 9 C -0.198 4.198 10 C -0.045 4.045 11 H 0.137 0.863 12 N -0.311 5.311 13 C -0.069 4.069 14 C 0.233 3.767 15 O -0.503 6.503 16 N -0.232 5.232 17 C -0.461 4.461 18 H 0.071 0.929 19 C -0.214 4.214 20 N -0.576 5.576 21 Si 0.787 3.213 22 H -0.181 1.181 23 H -0.201 1.201 24 H -0.153 1.153 25 C -0.160 4.160 26 C -0.085 4.085 27 C -0.154 4.154 28 C -0.171 4.171 29 C -0.128 4.128 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.253 0.747 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.163 0.837 39 H 0.133 0.867 40 H 0.097 0.903 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.132 0.868 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.810 -31.821 -19.357 38.274 hybrid contribution -0.794 0.382 1.078 1.393 sum -9.604 -31.440 -18.278 37.614 Atomic orbital electron populations 1.20720 0.87771 1.04075 1.03495 1.20639 0.97580 0.90003 1.10276 1.18844 0.86907 0.85274 0.75616 1.90763 1.15711 1.88462 1.52228 1.45835 1.11122 1.04874 1.74494 1.21272 0.94573 0.82110 1.01042 1.22555 0.98684 0.92493 0.98330 0.85774 1.23756 1.02547 0.96901 0.96581 1.23197 0.98328 0.89357 0.93577 0.86301 1.60021 1.27499 1.24184 1.19441 1.21684 0.93716 0.94917 0.96580 1.21135 0.87051 0.83857 0.84624 1.90549 1.18015 1.73357 1.68351 1.42024 1.10214 1.32841 1.38102 1.19016 0.95430 1.13911 1.17750 0.92943 1.26153 1.05387 0.94606 0.95247 1.69813 1.39098 1.21526 1.27152 0.85335 0.76076 0.79064 0.80839 1.18051 1.20057 1.15254 1.23056 0.98976 0.94229 0.99758 1.23701 0.98243 0.95408 0.91123 1.22272 0.94094 0.97386 1.01689 1.22704 0.96803 0.97193 1.00367 1.22308 0.98795 0.88908 1.02834 0.89919 0.89991 0.90526 0.74673 0.92325 0.93390 0.89448 0.91250 0.83736 0.86700 0.90283 0.77372 0.91137 0.91255 0.90005 0.92513 0.88682 0.88846 0.89659 0.86779 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.57 71.24 0.68 -0.06 16 2 C -0.18 -2.82 6.00 -18.70 -0.11 -2.93 16 3 C 0.54 11.75 7.75 86.57 0.67 12.42 16 4 O -0.59 -18.06 15.15 -4.07 -0.06 -18.12 16 5 N -0.71 -11.08 5.50 -466.72 -2.57 -13.65 16 6 C 0.13 2.38 5.51 86.38 0.48 2.86 16 7 C -0.10 -1.32 3.75 -10.27 -0.04 -1.35 16 8 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 9 C -0.16 -2.41 7.25 31.12 0.23 -2.19 16 10 C 0.07 1.21 4.18 45.44 0.19 1.40 16 11 H 0.12 1.72 7.87 -2.39 -0.02 1.70 16 12 N -0.68 -19.60 6.24 -492.87 -3.08 -22.68 16 13 C 0.06 1.87 6.01 85.56 0.51 2.38 16 14 C 0.45 20.21 7.82 87.66 0.69 20.90 16 15 O -0.62 -35.00 15.78 -3.08 -0.05 -35.05 16 16 N -0.59 -27.86 5.09 -306.99 -1.56 -29.42 16 17 C -0.33 -19.65 10.16 84.04 0.85 -18.79 16 18 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 19 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 20 N -0.94 -56.76 13.96 21.66 0.30 -56.46 16 21 Si 0.97 38.47 27.74 68.60 1.90 40.37 16 22 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 23 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 25 C -0.12 -2.15 7.44 31.12 0.23 -1.91 16 26 C -0.08 -1.26 6.60 -17.17 -0.11 -1.37 16 27 C -0.12 -1.94 6.99 30.06 0.21 -1.73 16 28 C -0.13 -1.27 8.17 30.94 0.25 -1.02 16 29 C -0.09 -0.73 7.71 30.16 0.23 -0.50 16 30 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.08 0.42 7.91 -2.39 -0.02 0.41 16 32 H 0.08 0.37 6.71 -2.39 -0.02 0.36 16 33 H 0.42 3.70 6.57 -92.70 -0.61 3.09 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.08 7.84 -2.38 -0.02 1.06 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.34 7.58 -2.39 -0.02 1.32 16 38 H 0.34 10.96 7.89 -89.69 -0.71 10.25 16 39 H 0.12 2.82 8.13 -2.39 -0.02 2.80 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.39 15.03 5.76 -92.71 -0.53 14.50 16 42 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.24 7.49 -2.39 -0.02 1.23 16 46 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 Total: -1.00 -85.59 407.71 -0.63 -86.22 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.94 Total: 41.09 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 5.43 Total: 7.70 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -6.91 Total: -122.21 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -0.11 Total: -53.17 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 1.90 Total: 40.37 kcal Total: -85.59 -0.63 -86.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707060833.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.334 kcal (2) G-P(sol) polarization free energy of solvation -85.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds