Wall clock time and date at job start Tue Mar 31 2020 18:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30255 * 125.62055 * 2 1 4 4 C 1.34476 * 108.70738 * 179.97438 * 3 2 1 5 5 C 1.34337 * 107.66368 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.44067 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47331 * 90.00446 * 6 5 4 8 8 O 1.21285 * 119.99956 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99927 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99618 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46891 * 324.99410 * 10 9 7 12 12 C 1.53006 * 109.46883 * 204.99844 * 10 9 7 13 13 N 1.46496 * 109.47070 * 54.99629 * 12 10 9 14 14 C 1.36943 * 119.99999 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99492 * 0.02562 * 14 13 12 16 16 C 1.38815 * 120.00148 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99970 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99803 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47274 * 60.00429 * 18 16 14 20 20 H 1.48501 * 109.46922 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47255 * 300.00091 * 18 16 14 22 22 C 1.52997 * 109.47417 * 84.99758 * 10 9 7 23 23 C 1.52996 * 109.46975 * 299.99578 * 22 10 9 24 24 C 1.53000 * 109.47328 * 180.02562 * 23 22 10 25 25 C 1.52997 * 109.47060 * 60.00126 * 24 23 22 26 26 C 1.53006 * 109.47127 * 300.00449 * 25 24 23 27 27 C 1.52997 * 109.47164 * 59.99836 * 26 25 24 28 28 O 1.33971 * 125.62259 * 180.28426 * 2 1 3 29 29 H 1.09001 * 109.46747 * 90.02438 * 1 2 3 30 30 H 1.08996 * 109.46949 * 210.02872 * 1 2 3 31 31 H 1.09003 * 109.47009 * 330.02744 * 1 2 3 32 32 H 1.07993 * 126.17186 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47030 * 329.99630 * 6 5 4 34 34 H 1.09005 * 109.46802 * 210.00025 * 6 5 4 35 35 H 0.96990 * 120.00325 * 359.97438 * 9 7 6 36 36 H 1.08992 * 109.47046 * 174.99891 * 12 10 9 37 37 H 1.09004 * 109.46579 * 295.00075 * 12 10 9 38 38 H 0.97001 * 120.00404 * 0.02562 * 13 12 10 39 39 H 0.96994 * 119.99748 * 179.97438 * 17 16 14 40 40 H 1.08992 * 109.47280 * 60.00113 * 22 10 9 41 41 H 1.09004 * 109.47368 * 60.00217 * 23 22 10 42 42 H 1.09001 * 109.47372 * 300.00372 * 23 22 10 43 43 H 1.09002 * 109.47398 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.47194 * 300.00476 * 24 23 22 45 45 H 1.08998 * 109.47533 * 59.99948 * 25 24 23 46 46 H 1.08996 * 109.47853 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47002 * 299.99574 * 26 25 24 48 48 H 1.09000 * 109.47050 * 179.97438 * 26 25 24 49 49 H 1.09002 * 109.47045 * 180.02562 * 27 26 25 50 50 H 1.09001 * 109.47375 * 59.99966 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5523 0.6676 0.0006 5 6 3.5699 -0.6756 0.0015 6 6 4.7938 -1.5548 0.0029 7 6 5.2008 -1.8470 1.4242 8 8 4.5603 -1.3863 2.3453 9 7 6.2771 -2.6195 1.6717 10 6 6.6724 -2.9040 3.0534 11 1 6.4690 -2.0328 3.6761 12 6 8.1674 -3.2264 3.1000 13 7 8.9228 -2.1292 2.4904 14 6 10.2887 -2.1958 2.4178 15 1 10.8088 -3.0573 2.8096 16 6 11.0045 -1.1564 1.8396 17 7 10.3704 -0.1067 1.3616 18 14 12.8676 -1.2469 1.7413 19 1 13.2643 -2.4393 0.9500 20 1 13.3888 -0.0210 1.0850 21 1 13.4311 -1.3521 3.1112 22 6 5.8759 -4.1014 3.5755 23 6 4.3810 -3.7789 3.5289 24 6 3.5844 -4.9760 4.0517 25 6 3.9974 -5.2725 5.4947 26 6 5.4924 -5.5949 5.5413 27 6 6.2889 -4.3978 5.0186 28 8 2.2874 -1.0890 -0.0054 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8903 0.5134 32 1 4.4157 1.3162 0.0003 33 1 5.6084 -1.0443 -0.5107 34 1 4.5700 -2.4900 -0.5104 35 1 6.7895 -2.9876 0.9351 36 1 8.4800 -3.3508 4.1367 37 1 8.3575 -4.1481 2.5500 38 1 8.4555 -1.3556 2.1381 39 1 10.8706 0.6197 0.9580 40 1 6.0793 -4.9725 2.9528 41 1 4.0868 -3.5673 2.5009 42 1 4.1776 -2.9077 4.1517 43 1 2.5194 -4.7465 4.0180 44 1 3.7878 -5.8475 3.4293 45 1 3.7942 -4.4012 6.1172 46 1 3.4304 -6.1256 5.8671 47 1 5.6957 -6.4664 4.9190 48 1 5.7867 -5.8057 6.5695 49 1 7.3539 -4.6277 5.0514 50 1 6.0856 -3.5263 5.6410 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714978415.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:42 Heat of formation + Delta-G solvation = -28.007022 kcal Electronic energy + Delta-G solvation = -29929.239525 eV Core-core repulsion = 25957.404409 eV Total energy + Delta-G solvation = -3971.835115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.28303 -40.08014 -38.15190 -35.75845 -34.69899 -33.63417 -33.17887 -31.74796 -30.76306 -30.51319 -30.16057 -27.16634 -25.87124 -23.85964 -22.70516 -22.36442 -21.74165 -21.37551 -20.51100 -20.06966 -19.60472 -17.47808 -17.04918 -16.94439 -16.24820 -15.90111 -15.82657 -14.88725 -14.58904 -14.49733 -14.11921 -14.05667 -13.93959 -13.64064 -13.59693 -13.28469 -13.19988 -13.09338 -12.93599 -12.69440 -12.37595 -12.28022 -12.02440 -11.90064 -11.58483 -11.27308 -11.20290 -11.00594 -10.88918 -10.86663 -10.66871 -10.51294 -10.44264 -10.22866 -10.07435 -9.82867 -9.73079 -9.65019 -8.94600 -8.62629 -8.61319 -6.99856 -5.82160 -3.11814 1.44226 2.57485 2.73427 2.84782 3.40023 3.45112 3.45957 3.51370 4.04046 4.52213 4.63918 4.75799 4.80206 4.85195 4.95415 4.99556 5.06498 5.16166 5.20406 5.26305 5.35462 5.40580 5.43483 5.46748 5.50259 5.56960 5.61008 5.64533 5.73553 5.77294 5.86369 5.91500 5.98897 6.01753 6.08119 6.14445 6.21944 6.29574 6.32303 6.38854 6.42715 6.44858 6.50928 6.62928 6.70093 6.92886 7.63911 7.75597 7.79220 8.35908 8.47111 9.47817 10.03343 10.38788 11.40073 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007878 B = 0.003915 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3553.256031 B = 7149.522832 C =10381.286729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.182 3.818 3 N -0.483 5.483 4 C -0.024 4.024 5 C -0.020 4.020 6 C -0.059 4.059 7 C 0.516 3.484 8 O -0.532 6.532 9 N -0.707 5.707 10 C 0.144 3.856 11 H 0.087 0.913 12 C 0.145 3.855 13 N -0.731 5.731 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.091 4.091 23 C -0.103 4.103 24 C -0.119 4.119 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.115 4.115 28 O -0.199 6.199 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.184 0.816 33 H 0.131 0.869 34 H 0.110 0.890 35 H 0.405 0.595 36 H 0.036 0.964 37 H 0.023 0.977 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.098 -8.399 -0.911 19.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.025 4.025 3 N -0.213 5.213 4 C -0.163 4.163 5 C -0.074 4.074 6 C -0.099 4.099 7 C 0.301 3.699 8 O -0.409 6.409 9 N -0.358 5.358 10 C 0.039 3.961 11 H 0.105 0.895 12 C 0.017 3.983 13 N -0.376 5.376 14 C -0.375 4.375 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.154 4.154 27 C -0.153 4.153 28 O -0.086 6.086 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.201 0.799 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.239 0.761 36 H 0.054 0.946 37 H 0.041 0.959 38 H 0.220 0.780 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.629 -7.540 -0.232 20.098 hybrid contribution 1.642 -0.544 -0.558 1.818 sum -16.986 -8.084 -0.789 18.828 Atomic orbital electron populations 1.20206 0.81582 1.05002 1.04342 1.26178 0.96325 0.78799 1.01185 1.70410 1.02167 1.30312 1.18399 1.23030 0.95020 0.92943 1.05277 1.22485 0.82937 0.94842 1.07106 1.20108 0.92320 1.00555 0.96961 1.20110 0.80838 0.78636 0.90342 1.90732 1.53264 1.51134 1.45786 1.45877 1.29171 1.51293 1.09455 1.21320 0.94660 0.97866 0.82256 0.89523 1.21009 0.87669 0.92382 0.97275 1.42339 1.03738 1.20079 1.71424 1.19160 0.82848 1.02776 1.32681 0.91240 1.24735 0.97912 0.96715 1.01334 1.69645 1.34486 1.08735 1.45042 0.86274 0.85553 0.76734 0.77627 1.21274 1.21686 1.21278 1.21513 0.95264 0.97792 0.96530 1.21596 0.93759 0.97412 1.01293 1.21560 0.99295 0.98641 0.96177 1.21533 0.96172 1.00895 0.97018 1.21510 0.94992 0.98251 1.00629 1.21608 1.00004 0.98202 0.95485 1.84325 1.16591 1.37742 1.69954 0.89188 0.89527 0.88243 0.79888 0.85115 0.87208 0.76051 0.94632 0.95893 0.78038 0.93416 0.91308 0.92446 0.91319 0.92674 0.92591 0.92146 0.92679 0.92225 0.92270 0.91164 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.41 10.51 36.01 0.38 -0.04 16 2 C 0.18 2.38 8.34 -12.94 -0.11 2.28 16 3 N -0.48 -7.39 11.29 -11.10 -0.13 -7.52 16 4 C -0.02 -0.36 11.80 -17.77 -0.21 -0.57 16 5 C -0.02 -0.29 5.88 -35.69 -0.21 -0.50 16 6 C -0.06 -0.71 6.25 -29.04 -0.18 -0.89 16 7 C 0.52 7.78 6.18 -10.99 -0.07 7.71 16 8 O -0.53 -9.82 13.16 5.55 0.07 -9.74 16 9 N -0.71 -10.37 4.41 -53.80 -0.24 -10.60 16 10 C 0.14 2.29 1.99 -67.93 -0.14 2.15 16 11 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 12 C 0.14 2.68 5.31 -4.04 -0.02 2.66 16 13 N -0.73 -17.38 5.43 -59.91 -0.33 -17.70 16 14 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 18 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 C -0.09 -1.21 1.96 -90.62 -0.18 -1.39 16 23 C -0.10 -1.41 3.73 -26.73 -0.10 -1.51 16 24 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 25 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 26 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 27 C -0.11 -1.44 4.85 -26.73 -0.13 -1.57 16 28 O -0.20 -2.83 10.78 5.36 0.06 -2.77 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.18 2.47 8.06 -52.49 -0.42 2.04 16 33 H 0.13 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 5.48 8.60 -40.82 -0.35 5.13 16 36 H 0.04 0.67 6.71 -51.93 -0.35 0.33 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.39 9.78 7.33 -40.82 -0.30 9.48 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.84 5.78 -51.93 -0.30 0.54 16 42 H 0.07 1.09 7.53 -51.93 -0.39 0.70 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.89 6.54 -51.93 -0.34 0.55 16 50 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 397.33 15.07 5.99 5.99 Total: -1.00 -33.42 397.33 -8.86 -42.28 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -8.31 Total: 12.83 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.68 Total: -3.07 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.04 Total: -62.33 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.13 Total: -12.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.42 -8.86 -42.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714978415.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.276 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds