Wall clock time and date at job start Tue Mar 31 2020 19:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47106 * 119.99764 * 2 1 4 4 O 1.21608 * 120.00004 * 179.97438 * 3 2 1 5 5 N 1.34775 * 119.99912 * 0.02562 * 3 2 1 6 6 C 1.46505 * 120.00012 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47203 * 174.98372 * 6 5 3 8 8 N 1.46899 * 112.85030 * 311.61518 * 7 6 5 9 9 C 1.46909 * 110.99887 * 294.64620 * 8 7 6 10 10 C 1.50700 * 109.46799 * 176.45726 * 9 8 7 11 11 O 1.21298 * 120.00321 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99576 * 179.97438 * 10 9 8 13 13 C 1.37103 * 119.99625 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00219 * 0.02562 * 13 12 10 15 15 C 1.38954 * 119.99484 * 179.97438 * 13 12 10 16 16 N 1.31409 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99595 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.46983 * 90.00221 * 17 15 13 19 19 H 1.48497 * 109.47010 * 210.00403 * 17 15 13 20 20 H 1.48504 * 109.46769 * 330.00123 * 17 15 13 21 21 C 1.53775 * 113.61321 * 82.80999 * 7 6 5 22 22 C 1.53961 * 87.01771 * 89.22934 * 21 7 6 23 23 C 1.53776 * 113.61372 * 180.42016 * 7 6 5 24 24 C 1.32986 * 120.00192 * 179.97438 * 2 1 3 25 25 C 1.51404 * 136.31768 * 179.62539 * 24 2 1 26 26 C 1.53373 * 87.52092 * 206.06368 * 25 24 2 27 27 C 1.51405 * 136.31416 * 0.02562 * 24 2 1 28 28 H 1.09002 * 109.47000 * 89.99970 * 1 2 3 29 29 H 1.08996 * 109.46710 * 209.99861 * 1 2 3 30 30 H 1.08999 * 109.47127 * 329.99755 * 1 2 3 31 31 H 0.97000 * 120.00576 * 0.02562 * 5 3 2 32 32 H 1.09003 * 109.46575 * 54.98575 * 6 5 3 33 33 H 1.08996 * 109.47421 * 294.98589 * 6 5 3 34 34 H 1.00896 * 111.00230 * 170.69280 * 8 7 6 35 35 H 1.09001 * 109.46698 * 296.45942 * 9 8 7 36 36 H 1.08997 * 109.47152 * 56.46292 * 9 8 7 37 37 H 0.97000 * 120.00411 * 0.02562 * 12 10 9 38 38 H 0.97003 * 119.99644 * 179.97438 * 16 15 13 39 39 H 1.09005 * 113.61386 * 203.74415 * 21 7 6 40 40 H 1.08995 * 113.62048 * 334.65217 * 21 7 6 41 41 H 1.08995 * 113.53534 * 270.80441 * 22 21 7 42 42 H 1.09002 * 113.66453 * 139.93276 * 22 21 7 43 43 H 1.09000 * 113.61794 * 25.34551 * 23 7 6 44 44 H 1.09005 * 113.61852 * 156.25476 * 23 7 6 45 45 H 1.09004 * 113.56447 * 320.64658 * 25 24 2 46 46 H 1.09005 * 113.55761 * 91.37791 * 25 24 2 47 47 H 1.09005 * 113.96974 * 220.29598 * 26 25 24 48 48 H 1.08995 * 113.60198 * 88.79415 * 26 25 24 49 49 H 1.09002 * 113.56265 * 268.62197 * 27 24 2 50 50 H 1.08998 * 113.56300 * 39.36276 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5686 2.4412 0.0005 6 6 2.3010 3.7100 0.0011 7 6 1.3115 4.8701 -0.1245 8 7 0.3369 4.6741 -1.2060 9 6 0.9992 4.6714 -2.5174 10 6 -0.0165 4.3819 -3.5924 11 8 -1.1779 4.1965 -3.2955 12 7 0.3654 4.3300 -4.8839 13 6 -0.5585 4.0661 -5.8618 14 1 -1.5924 3.9001 -5.5974 15 6 -0.1648 4.0131 -7.1934 16 7 1.0931 4.2155 -7.5152 17 14 -1.4238 3.6542 -8.5260 18 1 -2.0110 4.9298 -9.0086 19 1 -0.7621 2.9547 -9.6565 20 1 -2.4989 2.7926 -7.9719 21 6 0.6735 5.2830 1.2123 22 6 1.8606 6.2473 1.3890 23 6 1.9833 6.2533 -0.1439 24 6 2.1720 -1.1517 0.0005 25 6 3.6251 -1.5770 -0.0061 26 6 3.1709 -2.8819 -0.6720 27 6 1.8138 -2.6227 0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.5986 2.4412 0.0013 32 1 2.9933 3.7301 -0.8406 33 1 2.8586 3.8072 0.9326 34 1 -0.3896 5.3733 -1.1693 35 1 1.4515 5.6466 -2.6979 36 1 1.7727 3.9037 -2.5322 37 1 1.2941 4.4786 -5.1214 38 1 1.3680 4.1781 -8.4447 39 1 -0.2862 5.7878 1.1006 40 1 0.6477 4.4810 1.9500 41 1 2.7154 5.7974 1.8938 42 1 1.5806 7.2136 1.8084 43 1 3.0135 6.2335 -0.4995 44 1 1.3824 7.0239 -0.6270 45 1 4.2567 -0.9603 -0.6456 46 1 4.0421 -1.7188 0.9910 47 1 3.6836 -3.7698 -0.3017 48 1 3.1399 -2.8288 -1.7602 49 1 1.7337 -3.0516 0.9996 50 1 0.9605 -2.8635 -0.6332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717150169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:28 Heat of formation + Delta-G solvation = -16.128945 kcal Electronic energy + Delta-G solvation = -29464.167695 eV Core-core repulsion = 25492.847652 eV Total energy + Delta-G solvation = -3971.320043 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.39848 -39.52642 -38.18315 -37.94524 -34.35378 -34.07552 -33.24424 -32.83750 -31.18834 -27.78957 -26.72816 -26.58484 -25.78257 -25.56762 -24.27672 -23.03844 -22.17984 -20.39691 -19.25578 -19.20199 -17.87363 -17.85141 -16.72732 -16.42646 -16.01778 -15.65450 -15.38542 -15.35477 -14.72390 -14.51990 -14.49150 -14.18751 -14.02361 -13.57033 -13.40684 -13.23813 -12.87519 -12.69202 -12.55450 -12.46307 -12.36118 -12.22069 -12.01907 -11.93947 -11.65652 -11.55046 -11.31686 -11.10578 -11.06198 -10.95978 -10.74113 -10.53409 -10.39917 -10.35787 -10.20437 -9.57065 -9.50099 -9.00829 -8.71421 -8.48013 -8.05103 -7.95129 -6.40863 -3.81806 1.38792 3.17772 3.23131 3.26491 3.32252 3.41904 3.91800 4.05401 4.24732 4.36015 4.42314 4.44341 4.53322 4.56757 4.63619 4.72194 4.97878 5.00061 5.11259 5.24526 5.25665 5.35373 5.44577 5.49029 5.52212 5.57815 5.61433 5.65329 5.67377 5.69260 5.76571 5.77728 5.80768 5.84512 5.92992 5.95067 6.00700 6.05672 6.14073 6.18171 6.28195 6.28703 6.58428 6.67008 7.17556 7.55506 7.60350 7.75847 8.06757 8.41433 8.61852 9.18450 9.55327 10.06504 10.76847 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007514 B = 0.003632 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3725.519250 B = 7707.711200 C =10423.711592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.159 4.159 3 C 0.555 3.445 4 O -0.551 6.551 5 N -0.708 5.708 6 C 0.153 3.847 7 C 0.080 3.920 8 N -0.651 5.651 9 C 0.052 3.948 10 C 0.442 3.558 11 O -0.584 6.584 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.901 5.901 17 Si 0.929 3.071 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C -0.128 4.128 22 C -0.140 4.140 23 C -0.167 4.167 24 C -0.076 4.076 25 C -0.101 4.101 26 C -0.142 4.142 27 C -0.105 4.105 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.412 0.588 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.353 0.647 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -5.213 18.494 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.162 4.162 3 C 0.344 3.656 4 O -0.431 6.431 5 N -0.361 5.361 6 C 0.028 3.972 7 C -0.012 4.012 8 N -0.283 5.283 9 C -0.081 4.081 10 C 0.228 3.772 11 O -0.468 6.468 12 N -0.200 5.200 13 C -0.429 4.429 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.542 5.542 17 Si 0.756 3.244 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 C -0.166 4.166 22 C -0.177 4.177 23 C -0.207 4.207 24 C -0.078 4.078 25 C -0.138 4.138 26 C -0.180 4.180 27 C -0.142 4.142 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.249 0.751 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.174 0.826 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.112 0.888 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.115 0.885 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.092 -6.013 18.529 19.906 hybrid contribution -0.220 1.024 -1.183 1.580 sum 3.871 -4.990 17.346 18.460 Atomic orbital electron populations 1.20683 0.90316 1.02557 1.03097 1.20464 0.95979 0.91247 1.08467 1.18229 0.87084 0.83946 0.76335 1.90743 1.13586 1.87881 1.50877 1.45704 1.11334 1.04597 1.74430 1.20985 0.92970 0.81327 1.01892 1.22557 0.92982 0.92845 0.92832 1.59845 1.11951 1.55755 1.00762 1.21629 0.96801 1.00602 0.89048 1.19793 0.89328 0.84717 0.83411 1.90514 1.19198 1.55121 1.81961 1.41867 1.11460 1.62030 1.04648 1.19690 0.92632 1.45037 0.85534 0.87951 1.25260 0.96840 0.97434 0.98375 1.69616 1.15469 1.49767 1.19382 0.85872 0.80061 0.78578 0.79864 1.20439 1.20923 1.19406 1.23121 0.98318 0.99149 0.96008 1.22795 0.98756 0.99909 0.96285 1.23632 1.02014 0.98111 0.96949 1.23160 0.97942 0.93629 0.93063 1.22142 0.94159 0.95910 1.01571 1.22715 0.96634 0.98034 1.00581 1.22269 0.98620 0.91786 1.01534 0.90571 0.91476 0.91458 0.75056 0.91213 0.91218 0.82649 0.93721 0.89780 0.77521 0.91877 0.89464 0.90930 0.90039 0.91249 0.91065 0.89594 0.89681 0.88848 0.90629 0.89686 0.88488 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.57 36.01 0.34 -0.87 16 2 C -0.16 -2.09 6.00 -102.84 -0.62 -2.71 16 3 C 0.56 8.47 7.75 -12.66 -0.10 8.37 16 4 O -0.55 -9.83 15.15 5.27 0.08 -9.75 16 5 N -0.71 -9.62 5.33 -61.49 -0.33 -9.95 16 6 C 0.15 1.95 4.49 -4.04 -0.02 1.93 16 7 C 0.08 0.93 0.77 -130.80 -0.10 0.83 16 8 N -0.65 -9.63 5.36 -100.40 -0.54 -10.16 16 9 C 0.05 0.90 5.80 -4.97 -0.03 0.87 16 10 C 0.44 10.30 7.83 -10.98 -0.09 10.22 16 11 O -0.58 -15.41 15.86 5.54 0.09 -15.32 16 12 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 13 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 14 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 17 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 C -0.13 -1.23 7.36 -25.83 -0.19 -1.42 16 22 C -0.14 -1.21 7.74 -25.83 -0.20 -1.41 16 23 C -0.17 -1.72 6.61 -25.92 -0.17 -1.89 16 24 C -0.08 -0.92 6.60 -100.49 -0.66 -1.59 16 25 C -0.10 -1.15 6.99 -27.56 -0.19 -1.35 16 26 C -0.14 -1.31 8.17 -26.20 -0.21 -1.52 16 27 C -0.11 -0.95 7.71 -27.41 -0.21 -1.17 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.62 7.91 -51.93 -0.41 0.20 16 30 H 0.07 0.69 6.70 -51.93 -0.35 0.34 16 31 H 0.41 5.42 6.21 -40.82 -0.25 5.16 16 32 H 0.07 1.00 7.33 -51.93 -0.38 0.62 16 33 H 0.07 0.83 7.35 -51.93 -0.38 0.45 16 34 H 0.35 5.33 8.38 -39.29 -0.33 5.01 16 35 H 0.04 0.72 7.62 -51.93 -0.40 0.32 16 36 H 0.08 1.48 6.85 -51.93 -0.36 1.12 16 37 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 38 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.09 0.82 8.01 -51.93 -0.42 0.41 16 40 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.08 0.67 7.66 -51.93 -0.40 0.27 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.15 7.49 -51.93 -0.39 0.76 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 405.66 15.07 6.11 6.11 Total: -1.00 -32.19 405.66 -9.74 -41.93 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -8.11 Total: 19.17 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.69 Total: 0.30 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.20 Total: -58.55 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: 0.17 Total: -25.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.19 -9.74 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717150169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.803 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds