Wall clock time and date at job start Tue Mar 31 2020 19:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.47106 * 119.99764 * 2 1 4 4 O 1.21608 * 120.00004 * 179.97438 * 3 2 1 5 5 N 1.34775 * 119.99912 * 0.02562 * 3 2 1 6 6 C 1.46505 * 120.00012 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47203 * 174.98372 * 6 5 3 8 8 N 1.46899 * 112.85030 * 311.61518 * 7 6 5 9 9 C 1.46909 * 110.99887 * 294.64620 * 8 7 6 10 10 C 1.50700 * 109.46799 * 176.45726 * 9 8 7 11 11 O 1.21298 * 120.00321 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99576 * 179.97438 * 10 9 8 13 13 C 1.37103 * 119.99625 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00219 * 0.02562 * 13 12 10 15 15 C 1.38954 * 119.99484 * 179.97438 * 13 12 10 16 16 N 1.31409 * 120.00114 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99595 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.46983 * 90.00221 * 17 15 13 19 19 H 1.48497 * 109.47010 * 210.00403 * 17 15 13 20 20 H 1.48504 * 109.46769 * 330.00123 * 17 15 13 21 21 C 1.53775 * 113.61321 * 82.80999 * 7 6 5 22 22 C 1.53961 * 87.01771 * 89.22934 * 21 7 6 23 23 C 1.53776 * 113.61372 * 180.42016 * 7 6 5 24 24 C 1.32986 * 120.00192 * 179.97438 * 2 1 3 25 25 C 1.51404 * 136.31768 * 179.62539 * 24 2 1 26 26 C 1.53373 * 87.52092 * 206.06368 * 25 24 2 27 27 C 1.51405 * 136.31416 * 0.02562 * 24 2 1 28 28 H 1.09002 * 109.47000 * 89.99970 * 1 2 3 29 29 H 1.08996 * 109.46710 * 209.99861 * 1 2 3 30 30 H 1.08999 * 109.47127 * 329.99755 * 1 2 3 31 31 H 0.97000 * 120.00576 * 0.02562 * 5 3 2 32 32 H 1.09003 * 109.46575 * 54.98575 * 6 5 3 33 33 H 1.08996 * 109.47421 * 294.98589 * 6 5 3 34 34 H 1.00896 * 111.00230 * 170.69280 * 8 7 6 35 35 H 1.09001 * 109.46698 * 296.45942 * 9 8 7 36 36 H 1.08997 * 109.47152 * 56.46292 * 9 8 7 37 37 H 0.97000 * 120.00411 * 0.02562 * 12 10 9 38 38 H 0.97003 * 119.99644 * 179.97438 * 16 15 13 39 39 H 1.09005 * 113.61386 * 203.74415 * 21 7 6 40 40 H 1.08995 * 113.62048 * 334.65217 * 21 7 6 41 41 H 1.08995 * 113.53534 * 270.80441 * 22 21 7 42 42 H 1.09002 * 113.66453 * 139.93276 * 22 21 7 43 43 H 1.09000 * 113.61794 * 25.34551 * 23 7 6 44 44 H 1.09005 * 113.61852 * 156.25476 * 23 7 6 45 45 H 1.09004 * 113.56447 * 320.64658 * 25 24 2 46 46 H 1.09005 * 113.55761 * 91.37791 * 25 24 2 47 47 H 1.09005 * 113.96974 * 220.29598 * 26 25 24 48 48 H 1.08995 * 113.60198 * 88.79415 * 26 25 24 49 49 H 1.09002 * 113.56265 * 268.62197 * 27 24 2 50 50 H 1.08998 * 113.56300 * 39.36276 * 27 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5686 2.4412 0.0005 6 6 2.3010 3.7100 0.0011 7 6 1.3115 4.8701 -0.1245 8 7 0.3369 4.6741 -1.2060 9 6 0.9992 4.6714 -2.5174 10 6 -0.0165 4.3819 -3.5924 11 8 -1.1779 4.1965 -3.2955 12 7 0.3654 4.3300 -4.8839 13 6 -0.5585 4.0661 -5.8618 14 1 -1.5924 3.9001 -5.5974 15 6 -0.1648 4.0131 -7.1934 16 7 1.0931 4.2155 -7.5152 17 14 -1.4238 3.6542 -8.5260 18 1 -2.0110 4.9298 -9.0086 19 1 -0.7621 2.9547 -9.6565 20 1 -2.4989 2.7926 -7.9719 21 6 0.6735 5.2830 1.2123 22 6 1.8606 6.2473 1.3890 23 6 1.9833 6.2533 -0.1439 24 6 2.1720 -1.1517 0.0005 25 6 3.6251 -1.5770 -0.0061 26 6 3.1709 -2.8819 -0.6720 27 6 1.8138 -2.6227 0.0007 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.5986 2.4412 0.0013 32 1 2.9933 3.7301 -0.8406 33 1 2.8586 3.8072 0.9326 34 1 -0.3896 5.3733 -1.1693 35 1 1.4515 5.6466 -2.6979 36 1 1.7727 3.9037 -2.5322 37 1 1.2941 4.4786 -5.1214 38 1 1.3680 4.1781 -8.4447 39 1 -0.2862 5.7878 1.1006 40 1 0.6477 4.4810 1.9500 41 1 2.7154 5.7974 1.8938 42 1 1.5806 7.2136 1.8084 43 1 3.0135 6.2335 -0.4995 44 1 1.3824 7.0239 -0.6270 45 1 4.2567 -0.9603 -0.6456 46 1 4.0421 -1.7188 0.9910 47 1 3.6836 -3.7698 -0.3017 48 1 3.1399 -2.8288 -1.7602 49 1 1.7337 -3.0516 0.9996 50 1 0.9605 -2.8635 -0.6332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717150169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:27 Heat of formation + Delta-G solvation = -38.147103 kcal Electronic energy + Delta-G solvation = -29465.122474 eV Core-core repulsion = 25492.847652 eV Total energy + Delta-G solvation = -3972.274822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.45101 -40.57079 -39.81703 -39.09209 -36.04350 -35.45739 -34.56820 -33.84622 -33.23528 -28.99596 -28.12724 -27.47041 -26.75083 -26.40246 -25.95857 -24.03054 -23.13488 -21.41149 -21.05056 -20.22098 -19.90379 -18.86600 -18.03565 -17.42232 -17.21535 -16.98629 -16.57332 -16.38170 -16.34181 -15.89077 -15.79858 -15.65974 -15.18096 -14.98037 -14.57570 -14.29262 -14.19077 -13.80580 -13.73609 -13.53771 -13.32899 -13.30889 -13.19754 -13.15740 -12.92937 -12.86041 -12.47784 -12.43061 -12.41185 -12.14714 -11.96059 -11.88932 -11.56419 -11.50514 -11.40867 -11.22960 -10.67495 -10.34757 -10.12526 -10.02362 -9.69940 -9.30411 -8.47294 -5.96363 0.37893 1.37043 1.40527 1.53609 2.04110 2.15897 2.27979 2.31549 2.88084 3.19712 3.38930 3.47942 3.53834 3.58946 3.63836 3.75549 3.82200 3.91492 4.02802 4.23395 4.26279 4.40008 4.41590 4.47598 4.49079 4.58904 4.63467 4.73529 4.74487 4.77054 4.80913 4.83707 4.85563 4.98432 5.03542 5.07049 5.08187 5.09547 5.15928 5.36021 5.37012 5.38179 5.40336 5.50227 5.74521 5.87608 6.07463 6.40519 6.58200 6.63556 7.11365 7.26977 7.54888 8.09333 8.70263 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007514 B = 0.003632 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3725.519250 B = 7707.711200 C =10423.711592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.185 4.185 3 C 0.546 3.454 4 O -0.587 6.587 5 N -0.703 5.703 6 C 0.153 3.847 7 C 0.077 3.923 8 N -0.656 5.656 9 C 0.071 3.929 10 C 0.441 3.559 11 O -0.615 6.615 12 N -0.575 5.575 13 C -0.332 4.332 14 H 0.081 0.919 15 C -0.014 4.014 16 N -0.923 5.923 17 Si 0.993 3.007 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.271 1.271 21 C -0.120 4.120 22 C -0.127 4.127 23 C -0.166 4.166 24 C -0.083 4.083 25 C -0.110 4.110 26 C -0.134 4.134 27 C -0.093 4.093 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.414 0.586 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.353 0.647 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.393 0.607 38 H 0.277 0.723 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.123 0.877 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -5.745 19.649 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.188 4.188 3 C 0.336 3.664 4 O -0.469 6.469 5 N -0.354 5.354 6 C 0.029 3.971 7 C -0.014 4.014 8 N -0.289 5.289 9 C -0.061 4.061 10 C 0.229 3.771 11 O -0.501 6.501 12 N -0.212 5.212 13 C -0.462 4.462 14 H 0.099 0.901 15 C -0.214 4.214 16 N -0.564 5.564 17 Si 0.817 3.183 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.196 1.196 21 C -0.158 4.158 22 C -0.165 4.165 23 C -0.206 4.206 24 C -0.084 4.084 25 C -0.147 4.147 26 C -0.171 4.171 27 C -0.130 4.130 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.252 0.748 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.173 0.827 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.226 0.774 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.094 0.906 49 H 0.141 0.859 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.696 -6.523 19.702 21.081 hybrid contribution -0.035 1.181 -1.485 1.898 sum 3.660 -5.342 18.218 19.334 Atomic orbital electron populations 1.20644 0.88904 1.03922 1.02427 1.20582 0.97000 0.90683 1.10511 1.18704 0.86903 0.85045 0.75767 1.90713 1.14999 1.88430 1.52799 1.45717 1.11391 1.04648 1.73649 1.21027 0.93046 0.81453 1.01610 1.22662 0.92747 0.93166 0.92860 1.59799 1.12732 1.56235 1.00103 1.21362 0.94842 1.01355 0.88590 1.20765 0.89948 0.82643 0.83760 1.90483 1.21085 1.56043 1.82530 1.41960 1.11176 1.62849 1.05265 1.19684 0.92371 1.47152 0.86955 0.90057 1.26066 0.98799 0.96600 0.99906 1.69688 1.16760 1.49784 1.20157 0.84925 0.77656 0.78649 0.77112 1.19492 1.19735 1.19572 1.23112 0.98889 0.99496 0.94324 1.22760 0.98420 1.00434 0.94871 1.23624 1.01751 0.96723 0.98548 1.23698 0.98710 0.95132 0.90906 1.22258 0.93513 0.96897 1.01983 1.22692 0.96797 0.97646 1.00008 1.22346 0.98649 0.88982 1.03018 0.92149 0.89269 0.90980 0.74794 0.93223 0.90063 0.82662 0.91853 0.89893 0.77359 0.91375 0.88957 0.90354 0.89305 0.89732 0.91107 0.89579 0.92678 0.87584 0.88073 0.90578 0.85899 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.21 9.57 71.24 0.68 -1.53 16 2 C -0.18 -4.91 6.00 -18.70 -0.11 -5.02 16 3 C 0.55 17.11 7.75 86.57 0.67 17.78 16 4 O -0.59 -21.78 15.15 -4.06 -0.06 -21.85 16 5 N -0.70 -19.31 5.33 -466.71 -2.49 -21.80 16 6 C 0.15 3.89 4.49 86.38 0.39 4.27 16 7 C 0.08 1.72 0.77 4.05 0.00 1.72 16 8 N -0.66 -19.16 5.36 -471.54 -2.53 -21.69 16 9 C 0.07 2.49 5.80 85.56 0.50 2.98 16 10 C 0.44 21.02 7.83 87.66 0.69 21.70 16 11 O -0.62 -33.23 15.86 -3.09 -0.05 -33.28 16 12 N -0.58 -30.08 5.29 -306.97 -1.62 -31.70 16 13 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 14 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 15 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 16 N -0.92 -50.87 13.05 21.66 0.28 -50.59 16 17 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 18 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 C -0.12 -2.06 7.36 31.18 0.23 -1.83 16 22 C -0.13 -1.89 7.74 31.18 0.24 -1.65 16 23 C -0.17 -3.16 6.61 31.12 0.21 -2.96 16 24 C -0.08 -1.96 6.60 -17.17 -0.11 -2.08 16 25 C -0.11 -2.48 6.99 30.06 0.21 -2.27 16 26 C -0.13 -2.25 8.17 30.94 0.25 -2.00 16 27 C -0.09 -1.48 7.71 30.16 0.23 -1.25 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.49 7.91 -2.39 -0.02 1.47 16 30 H 0.07 1.44 6.70 -2.39 -0.02 1.42 16 31 H 0.41 10.93 6.21 -92.71 -0.58 10.35 16 32 H 0.05 1.46 7.33 -2.39 -0.02 1.45 16 33 H 0.08 1.88 7.35 -2.39 -0.02 1.86 16 34 H 0.35 10.46 8.38 -89.70 -0.75 9.70 16 35 H 0.06 2.00 7.62 -2.39 -0.02 1.98 16 36 H 0.08 2.97 6.85 -2.39 -0.02 2.95 16 37 H 0.39 19.96 7.90 -92.71 -0.73 19.22 16 38 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 39 H 0.09 1.54 8.01 -2.38 -0.02 1.52 16 40 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 41 H 0.09 1.23 7.66 -2.39 -0.02 1.21 16 42 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 44 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.05 1.57 7.49 -2.39 -0.02 1.56 16 46 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 48 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -71.26 405.66 -0.17 -71.43 By element: Atomic # 1 Polarization: 55.88 SS G_CDS: -1.08 Total: 54.80 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 5.35 Total: 9.36 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -6.36 Total: -125.78 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -0.11 Total: -55.12 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.26 -0.17 -71.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717150169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.281 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds