Wall clock time and date at job start Tue Mar 31 2020 19:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47186 * 2 1 4 4 C 1.36773 * 125.79804 * 270.02581 * 3 2 1 5 5 C 1.47260 * 126.94418 * 0.02562 * 4 3 2 6 6 O 1.21622 * 120.00339 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99634 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99910 * 174.69391 * 7 5 4 9 9 C 1.52998 * 109.54426 * 304.10297 * 8 7 5 10 10 N 1.46503 * 109.46680 * 305.58330 * 9 8 7 11 11 C 1.36946 * 119.99782 * 175.02823 * 10 9 8 12 12 H 1.07995 * 120.00108 * 359.97438 * 11 10 9 13 13 C 1.38808 * 119.99747 * 179.97438 * 11 10 9 14 14 N 1.31617 * 120.00140 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00109 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47000 * 89.99647 * 15 13 11 17 17 H 1.48492 * 109.47368 * 210.00036 * 15 13 11 18 18 H 1.48504 * 109.46856 * 329.99882 * 15 13 11 19 19 C 1.53171 * 109.54604 * 183.92378 * 8 7 5 20 20 C 1.53281 * 109.06196 * 297.02634 * 19 8 7 21 21 O 1.42902 * 109.46626 * 302.44535 * 20 19 8 22 22 C 1.42905 * 114.09375 * 61.15671 * 21 20 19 23 23 C 1.53093 * 109.41708 * 298.84356 * 22 21 20 24 24 C 1.46694 * 106.11476 * 179.97438 * 4 3 2 25 25 C 1.34488 * 106.33045 * 359.77412 * 24 4 3 26 26 N 1.34655 * 125.80598 * 90.02356 * 3 2 1 27 27 C 1.46500 * 124.84714 * 359.96752 * 26 3 2 28 28 H 1.08999 * 109.46929 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47134 * 300.00014 * 1 2 3 30 30 H 1.08993 * 109.47348 * 60.00067 * 1 2 3 31 31 H 1.09002 * 109.47134 * 239.99986 * 2 1 3 32 32 H 1.08999 * 109.47255 * 120.00396 * 2 1 3 33 33 H 0.96995 * 120.00446 * 354.69266 * 7 5 4 34 34 H 1.09005 * 109.47292 * 65.57539 * 9 8 7 35 35 H 1.08994 * 109.47390 * 185.58193 * 9 8 7 36 36 H 0.96993 * 120.00208 * 355.02278 * 10 9 8 37 37 H 0.96999 * 120.00455 * 180.02562 * 14 13 11 38 38 H 1.08992 * 109.52743 * 57.01723 * 19 8 7 39 39 H 1.09008 * 109.52689 * 177.20955 * 19 8 7 40 40 H 1.09001 * 109.46027 * 182.44759 * 20 19 8 41 41 H 1.09003 * 109.46507 * 62.45007 * 20 19 8 42 42 H 1.09002 * 109.48107 * 178.86289 * 22 21 20 43 43 H 1.08994 * 109.49120 * 58.83278 * 22 21 20 44 44 H 1.09004 * 109.52184 * 297.70600 * 23 22 21 45 45 H 1.09001 * 109.57502 * 177.54716 * 23 22 21 46 46 H 1.07998 * 126.83733 * 180.02562 * 24 4 3 47 47 H 1.08005 * 125.57421 * 180.20853 * 25 24 4 48 48 H 1.08998 * 109.47540 * 89.99677 * 27 26 3 49 49 H 1.09004 * 109.47169 * 329.99628 * 27 26 3 50 50 H 1.08997 * 109.47201 * 209.99643 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2985 2.1752 -1.1093 5 6 2.1518 1.7637 -2.5157 6 8 1.7562 0.6453 -2.7840 7 7 2.4569 2.6261 -3.5054 8 6 2.4229 2.1814 -4.9009 9 6 3.3364 0.9662 -5.0732 10 7 4.6792 1.2919 -4.5860 11 6 5.6461 0.3230 -4.5446 12 1 5.4188 -0.6811 -4.8706 13 6 6.9185 0.6317 -4.0834 14 7 7.1957 1.8556 -3.6866 15 14 8.2374 -0.6899 -4.0262 16 1 8.9778 -0.7065 -5.3133 17 1 9.1804 -0.4004 -2.9163 18 1 7.6022 -2.0137 -3.8034 19 6 2.9016 3.3157 -5.8121 20 6 1.9340 4.4982 -5.6899 21 8 0.6136 4.0701 -6.0295 22 6 0.0971 3.0427 -5.1811 23 6 0.9887 1.8024 -5.2831 24 6 2.7586 3.4776 -0.6153 25 6 2.7278 3.4050 0.7273 26 7 2.2954 2.1633 1.0921 27 6 2.1335 1.7058 2.4743 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.6990 3.5413 -3.2939 34 1 2.9368 0.1274 -4.5033 35 1 3.3880 0.6971 -6.1281 36 1 4.8833 2.1937 -4.2929 37 1 8.0849 2.0715 -3.3647 38 1 3.9015 3.6278 -5.5106 39 1 2.9234 2.9686 -6.8452 40 1 2.2443 5.2929 -6.3684 41 1 1.9432 4.8707 -4.6655 42 1 -0.9160 2.7887 -5.4931 43 1 0.0821 3.3958 -4.1501 44 1 0.9719 1.4247 -6.3054 45 1 0.6222 1.0323 -4.6042 46 1 3.0581 4.3271 -1.2110 47 1 3.0034 4.1988 1.4059 48 1 3.0620 1.2493 2.8171 49 1 1.3286 0.9723 2.5224 50 1 1.8893 2.5554 3.1120 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717266767.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:38 Heat of formation + Delta-G solvation = -23.158076 kcal Electronic energy + Delta-G solvation = -31264.485681 eV Core-core repulsion = 27292.860832 eV Total energy + Delta-G solvation = -3971.624849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23335 -40.07611 -37.87801 -35.53827 -33.71131 -33.32549 -32.77283 -31.24878 -30.91622 -30.25597 -28.12712 -26.76131 -26.19298 -23.68517 -23.58794 -23.17214 -22.04880 -21.33148 -20.30805 -18.79657 -18.63353 -17.27707 -17.10243 -16.07015 -15.79660 -15.52499 -15.38469 -15.23408 -14.59777 -14.44725 -14.20829 -14.04685 -13.87985 -13.41470 -13.38432 -13.17182 -13.00384 -12.74309 -12.55676 -12.45684 -12.24208 -12.20150 -12.05306 -11.79528 -11.63792 -11.39721 -11.24912 -11.05691 -10.82399 -10.78460 -10.75188 -10.36174 -10.19064 -9.98115 -9.60073 -9.36941 -9.04052 -8.67651 -8.45069 -8.28901 -7.91436 -6.74319 -5.65094 -2.90344 2.09743 2.64433 2.90446 3.49668 3.54688 3.56785 3.81074 4.07016 4.15894 4.64417 4.68821 4.77251 4.95452 4.99125 5.02681 5.15499 5.16299 5.21622 5.26334 5.29095 5.37314 5.45038 5.55542 5.59111 5.61966 5.66627 5.70363 5.85921 5.88008 5.93700 6.07194 6.08631 6.16413 6.21156 6.24291 6.30428 6.36604 6.44784 6.48664 6.62376 6.71200 6.99682 7.04174 7.23929 7.28310 7.37606 7.38995 7.82289 8.20706 8.54483 8.97934 9.65848 10.25249 10.61122 11.58167 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007320 B = 0.005690 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3824.274947 B = 4919.927101 C = 7290.693638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.064 4.064 3 C 0.104 3.896 4 C -0.221 4.221 5 C 0.605 3.395 6 O -0.545 6.545 7 N -0.710 5.710 8 C 0.177 3.823 9 C 0.142 3.858 10 N -0.723 5.723 11 C -0.225 4.225 12 H 0.067 0.933 13 C -0.016 4.016 14 N -0.935 5.935 15 Si 0.903 3.097 16 H -0.291 1.291 17 H -0.294 1.294 18 H -0.283 1.283 19 C -0.155 4.155 20 C 0.061 3.939 21 O -0.387 6.387 22 C 0.066 3.934 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.024 4.024 26 N -0.447 5.447 27 C 0.069 3.931 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.393 0.607 34 H 0.051 0.949 35 H 0.017 0.983 36 H 0.382 0.618 37 H 0.252 0.748 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.142 0.858 47 H 0.163 0.837 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 5.249 8.956 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 C -0.012 4.012 4 C -0.231 4.231 5 C 0.394 3.606 6 O -0.424 6.424 7 N -0.361 5.361 8 C 0.091 3.909 9 C 0.014 3.986 10 N -0.367 5.367 11 C -0.357 4.357 12 H 0.085 0.915 13 C -0.212 4.212 14 N -0.585 5.585 15 Si 0.734 3.266 16 H -0.219 1.219 17 H -0.220 1.220 18 H -0.209 1.209 19 C -0.193 4.193 20 C -0.015 4.015 21 O -0.306 6.306 22 C -0.010 4.010 23 C -0.201 4.201 24 C -0.186 4.186 25 C -0.150 4.150 26 N -0.124 5.124 27 C -0.072 4.072 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.227 0.773 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.216 0.784 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.160 0.840 47 H 0.180 0.820 48 H 0.091 0.909 49 H 0.101 0.899 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.766 4.274 8.940 18.621 hybrid contribution 1.556 0.063 0.665 1.693 sum -14.209 4.337 9.605 17.691 Atomic orbital electron populations 1.21623 0.94492 1.01635 1.01621 1.20298 0.96126 0.89525 1.04249 1.20229 1.01491 0.94333 0.85122 1.20190 1.14803 0.95789 0.92339 1.17071 0.75901 0.83991 0.83608 1.90631 1.47354 1.20327 1.84087 1.45665 1.70891 1.14014 1.05498 1.20498 0.94717 0.95378 0.80287 1.21074 0.85973 0.94661 0.96868 1.42191 1.05843 1.11100 1.77549 1.19215 0.90245 0.91507 1.34716 0.91498 1.24648 0.97542 0.96460 1.02508 1.69647 1.20644 1.17837 1.50375 0.86239 0.82086 0.81208 0.77029 1.21914 1.22005 1.20934 1.22466 1.00330 0.95528 1.00973 1.22622 0.82535 0.96257 1.00118 1.87878 1.30625 1.55687 1.56407 1.22503 0.96934 0.87556 0.94038 1.22550 0.95372 0.99128 1.03068 1.21978 1.05808 0.97336 0.93499 1.21579 1.09003 0.88167 0.96210 1.43446 1.51545 1.11538 1.05861 1.22034 1.03171 1.01575 0.80468 0.92262 0.93869 0.91850 0.87220 0.91973 0.77328 0.93150 0.96532 0.78439 0.93862 0.89263 0.89701 0.88971 0.93543 0.89505 0.93376 0.90714 0.88691 0.84030 0.81994 0.90874 0.89892 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 37.16 0.37 -1.22 16 2 C -0.06 -0.89 5.31 -27.89 -0.15 -1.03 16 3 C 0.10 1.60 6.14 -81.89 -0.50 1.09 16 4 C -0.22 -3.80 6.29 -103.35 -0.65 -4.45 16 5 C 0.60 11.30 7.22 -12.59 -0.09 11.21 16 6 O -0.54 -11.18 11.12 5.26 0.06 -11.12 16 7 N -0.71 -12.02 3.75 -48.55 -0.18 -12.20 16 8 C 0.18 3.05 0.32 -131.64 -0.04 3.01 16 9 C 0.14 3.12 4.79 -4.04 -0.02 3.10 16 10 N -0.72 -18.74 5.21 -59.91 -0.31 -19.05 16 11 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 12 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 13 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 14 N -0.94 -28.68 13.06 55.49 0.72 -27.95 16 15 Si 0.90 23.31 29.55 -169.99 -5.02 18.28 16 16 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 17 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 18 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 19 C -0.15 -2.41 4.84 -26.50 -0.13 -2.54 16 20 C 0.06 0.81 6.67 37.30 0.25 1.06 16 21 O -0.39 -5.56 10.77 -35.23 -0.38 -5.94 16 22 C 0.07 0.90 6.68 37.21 0.25 1.15 16 23 C -0.16 -2.50 4.82 -26.59 -0.13 -2.63 16 24 C -0.16 -2.39 10.56 -37.49 -0.40 -2.79 16 25 C -0.02 -0.30 11.34 -16.82 -0.19 -0.49 16 26 N -0.45 -5.63 3.09 -119.88 -0.37 -6.00 16 27 C 0.07 0.56 10.61 59.85 0.63 1.19 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 1.86 6.47 -51.93 -0.34 1.53 16 32 H 0.06 0.73 7.58 -51.93 -0.39 0.33 16 33 H 0.39 6.01 6.54 -40.82 -0.27 5.75 16 34 H 0.05 1.22 6.25 -51.93 -0.32 0.90 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.38 10.19 6.51 -40.82 -0.27 9.92 16 37 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 1.53 7.22 -51.93 -0.37 1.15 16 39 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.57 7.01 -51.93 -0.36 0.20 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.66 7.75 -51.93 -0.40 0.25 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.09 1.60 6.25 -51.93 -0.32 1.27 16 46 H 0.14 1.85 7.71 -52.49 -0.40 1.44 16 47 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.57 7.47 -51.93 -0.39 0.18 16 50 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -34.82 391.18 -8.67 -43.49 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -8.04 Total: 15.22 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.04 Total: -0.62 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -0.14 Total: -65.21 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.32 Total: -17.06 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.02 Total: 18.28 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.82 -8.67 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717266767.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.333 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds