Wall clock time and date at job start Tue Mar 31 2020 19:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30173 * 126.80196 * 2 1 4 4 O 1.20927 * 111.60716 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.56313 * 359.76586 * 4 3 2 6 6 C 1.50699 * 126.77685 * 180.28849 * 5 4 3 7 7 C 1.35458 * 106.44278 * 0.37823 * 5 4 3 8 8 C 1.50695 * 128.00099 * 179.91383 * 7 5 4 9 9 H 1.09002 * 109.47351 * 5.47797 * 8 7 5 10 10 C 1.53002 * 109.47192 * 245.47551 * 8 7 5 11 11 C 1.52999 * 109.47223 * 125.47433 * 8 7 5 12 12 C 1.50699 * 109.47460 * 184.99849 * 11 8 7 13 13 O 1.21282 * 120.00152 * 0.02562 * 12 11 8 14 14 N 1.34779 * 120.00075 * 180.02562 * 12 11 8 15 15 C 1.46500 * 119.99636 * 180.02562 * 14 12 11 16 16 H 1.08994 * 112.85250 * 336.19170 * 15 14 12 17 17 C 1.53782 * 113.61291 * 107.50069 * 15 14 12 18 18 C 1.53781 * 87.08300 * 89.11242 * 17 15 14 19 19 H 1.08996 * 113.61781 * 270.88465 * 18 17 15 20 20 C 1.53007 * 113.61478 * 139.97538 * 18 17 15 21 21 N 1.46501 * 109.46416 * 87.50470 * 20 18 17 22 22 C 1.36945 * 119.99587 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99853 * 0.02562 * 22 21 20 24 24 C 1.38811 * 119.99783 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99712 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00023 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.46995 * 90.00370 * 26 24 22 28 28 H 1.48504 * 109.46965 * 209.99852 * 26 24 22 29 29 H 1.48496 * 109.47146 * 329.99628 * 26 24 22 30 30 C 1.53781 * 87.07993 * 25.43262 * 18 17 15 31 31 H 1.09002 * 109.47280 * 274.85543 * 1 2 3 32 32 H 1.09001 * 109.47223 * 34.85397 * 1 2 3 33 33 H 1.08996 * 109.47484 * 154.85087 * 1 2 3 34 34 H 1.08999 * 109.46895 * 265.01707 * 6 5 4 35 35 H 1.08999 * 109.46936 * 25.01311 * 6 5 4 36 36 H 1.08993 * 109.47128 * 145.01203 * 6 5 4 37 37 H 1.09001 * 109.47008 * 54.23093 * 10 8 7 38 38 H 1.09002 * 109.47096 * 174.22898 * 10 8 7 39 39 H 1.08999 * 109.46726 * 294.23116 * 10 8 7 40 40 H 1.08997 * 109.47139 * 305.00137 * 11 8 7 41 41 H 1.09000 * 109.46892 * 64.99864 * 11 8 7 42 42 H 0.96993 * 119.99836 * 359.97438 * 14 12 11 43 43 H 1.09006 * 113.61266 * 203.66097 * 17 15 14 44 44 H 1.08992 * 113.61804 * 334.56353 * 17 15 14 45 45 H 1.09001 * 109.47161 * 207.50189 * 20 18 17 46 46 H 1.08997 * 109.47041 * 327.50570 * 20 18 17 47 47 H 0.96998 * 120.00452 * 0.02562 * 21 20 18 48 48 H 0.96998 * 119.99787 * 179.97438 * 25 24 22 49 49 H 1.09009 * 113.61036 * 220.01875 * 30 18 17 50 50 H 1.09003 * 113.69430 * 89.13101 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0042 6 6 4.9022 -1.3696 0.0112 7 6 2.3539 -1.1320 -0.0007 8 6 1.9590 -2.5863 -0.0002 9 1 2.8506 -3.2049 0.1029 10 6 1.2535 -2.9237 -1.3153 11 6 1.0122 -2.8574 1.1706 12 6 0.7146 -4.3328 1.2449 13 8 1.2113 -5.0929 0.4409 14 7 -0.1036 -4.8078 2.2049 15 6 -0.3923 -6.2422 2.2774 16 1 -0.2546 -6.7505 1.3231 17 6 0.2925 -6.9495 3.4588 18 6 -0.9550 -6.6021 4.2881 19 1 -0.8940 -5.6333 4.7838 20 6 -1.3984 -7.7252 5.2279 21 7 -0.6892 -7.6026 6.5039 22 6 -0.9256 -8.5033 7.5079 23 1 -1.6346 -9.3043 7.3589 24 6 -0.2532 -8.3875 8.7168 25 7 -0.4800 -9.2536 9.6816 26 14 0.9737 -7.0026 8.9742 27 1 0.2735 -5.8189 9.5345 28 1 2.0298 -7.4461 9.9192 29 1 1.5930 -6.6418 7.6736 30 6 -1.7310 -6.5672 2.9609 31 1 -0.3634 0.0870 1.0240 32 1 -0.3634 0.8433 -0.5873 33 1 -0.3634 -0.9302 -0.4367 34 1 5.1739 -1.6336 -1.0108 35 1 5.6853 -0.7489 0.4466 36 1 4.7873 -2.2777 0.6029 37 1 1.8887 -2.6351 -2.1528 38 1 1.0595 -3.9954 -1.3589 39 1 0.3099 -2.3810 -1.3709 40 1 1.4815 -2.5341 2.0998 41 1 0.0835 -2.3065 1.0219 42 1 -0.5005 -4.2000 2.8482 43 1 0.4312 -8.0199 3.3059 44 1 1.1980 -6.4492 3.8018 45 1 -2.4722 -7.6518 5.4005 46 1 -1.1683 -8.6897 4.7754 47 1 -0.0527 -6.8830 6.6379 48 1 -0.0099 -9.1729 10.5262 49 1 -2.4592 -5.7581 2.9021 50 1 -2.1464 -7.5324 2.6709 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725359556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:35 Heat of formation + Delta-G solvation = 17.666157 kcal Electronic energy + Delta-G solvation = -28651.086082 eV Core-core repulsion = 24681.231504 eV Total energy + Delta-G solvation = -3969.854577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.91226 -41.32526 -39.73159 -37.48417 -36.45246 -34.74240 -34.40194 -33.42920 -33.09309 -29.74641 -29.43414 -28.48936 -28.27111 -26.60061 -25.19913 -24.58577 -22.98040 -22.24320 -21.15715 -21.01868 -20.42407 -19.45864 -18.66148 -18.16168 -17.62707 -16.95181 -16.64193 -16.55741 -16.03143 -15.88955 -15.38776 -15.27894 -15.05668 -14.58058 -14.51353 -14.45707 -14.27787 -14.02332 -13.88918 -13.77212 -13.62756 -13.52931 -13.47822 -13.34486 -13.16989 -12.97678 -12.72232 -12.40704 -12.27120 -12.25032 -12.16387 -11.87461 -11.69079 -11.48748 -11.37200 -11.16424 -10.88487 -10.82029 -10.73081 -10.06903 -9.95409 -9.27441 -8.03026 -5.35981 0.49511 1.21947 1.36673 1.41035 1.48564 1.67419 2.14015 2.26746 2.48268 3.23490 3.27809 3.49649 3.53602 3.61690 3.63534 3.79049 3.89229 3.97323 4.03728 4.13561 4.14722 4.28456 4.39333 4.43067 4.56312 4.62066 4.65368 4.66830 4.71567 4.76122 4.81073 4.86242 4.88034 4.89461 4.92893 4.94654 5.00633 5.08066 5.13129 5.15946 5.21078 5.28568 5.31978 5.37390 5.49493 5.72278 5.77289 6.21500 6.61550 7.08704 7.31583 7.31773 7.86041 8.04927 9.18752 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.002175 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.062921 B =12871.206891 C =13796.465909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.025 3.975 3 N -0.402 5.402 4 O 0.078 5.922 5 C -0.028 4.028 6 C -0.077 4.077 7 C -0.202 4.202 8 C 0.012 3.988 9 H 0.085 0.915 10 C -0.146 4.146 11 C -0.132 4.132 12 C 0.517 3.483 13 O -0.571 6.571 14 N -0.703 5.703 15 C 0.128 3.872 16 H 0.094 0.906 17 C -0.146 4.146 18 C -0.115 4.115 19 H 0.096 0.904 20 C 0.161 3.839 21 N -0.758 5.758 22 C -0.235 4.235 23 H 0.054 0.946 24 C -0.069 4.069 25 N -0.986 5.986 26 Si 0.959 3.041 27 H -0.275 1.275 28 H -0.297 1.297 29 H -0.252 1.252 30 C -0.119 4.119 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.106 0.894 41 H 0.119 0.881 42 H 0.414 0.586 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.025 0.975 46 H 0.022 0.978 47 H 0.366 0.634 48 H 0.258 0.742 49 H 0.093 0.907 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 20.547 -25.827 33.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 N -0.112 5.112 4 O 0.016 5.984 5 C -0.091 4.091 6 C -0.134 4.134 7 C -0.206 4.206 8 C -0.007 4.007 9 H 0.103 0.897 10 C -0.203 4.203 11 C -0.172 4.172 12 C 0.305 3.695 13 O -0.451 6.451 14 N -0.355 5.355 15 C 0.022 3.978 16 H 0.112 0.888 17 C -0.185 4.185 18 C -0.134 4.134 19 H 0.114 0.886 20 C 0.035 3.965 21 N -0.403 5.403 22 C -0.367 4.367 23 H 0.072 0.928 24 C -0.260 4.260 25 N -0.636 5.636 26 Si 0.786 3.214 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.176 1.176 30 C -0.157 4.157 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.251 0.749 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.043 0.957 46 H 0.040 0.960 47 H 0.199 0.801 48 H 0.066 0.934 49 H 0.112 0.888 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.755 21.152 -26.332 34.109 hybrid contribution 0.515 -0.210 1.201 1.323 sum 5.270 20.942 -25.131 33.135 Atomic orbital electron populations 1.20474 0.84398 1.04713 1.04574 1.23882 1.00045 0.88167 1.01308 1.73836 0.89850 1.25238 1.22281 1.84774 1.21523 1.23528 1.68538 1.24891 0.99579 0.83251 1.01418 1.20544 0.88884 0.98687 1.05287 1.21014 0.91610 0.97248 1.10733 1.19061 0.99011 0.87480 0.95144 0.89651 1.21912 1.00305 1.02566 0.95498 1.21811 1.02878 0.91439 1.01048 1.20983 0.77450 0.91357 0.79723 1.90673 1.52173 1.60491 1.41745 1.45672 1.48866 1.08107 1.32835 1.21701 0.96229 0.81591 0.98292 0.88788 1.23460 0.97375 1.01043 0.96610 1.22766 0.97184 0.98652 0.94764 0.88626 1.20831 0.94677 0.96490 0.84481 1.42727 1.50864 1.33671 1.13058 1.19076 1.18920 1.05999 0.92660 0.92791 1.25575 1.02694 1.01695 0.96008 1.69898 1.47727 1.40157 1.05862 0.85342 0.78770 0.79141 0.78118 1.20145 1.22413 1.17614 1.23218 0.95675 1.03858 0.92967 0.88624 0.90377 0.88344 0.88013 0.88601 0.88174 0.92931 0.91476 0.91792 0.87569 0.86338 0.74947 0.89889 0.92420 0.95697 0.96031 0.80125 0.93363 0.88840 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.17 71.24 0.65 -0.19 16 2 C 0.02 0.41 7.23 43.58 0.31 0.72 16 3 N -0.40 -8.57 12.07 -49.55 -0.60 -9.17 16 4 O 0.08 1.52 11.20 71.56 0.80 2.32 16 5 C -0.03 -0.42 7.49 25.04 0.19 -0.23 16 6 C -0.08 -0.60 10.12 71.24 0.72 0.12 16 7 C -0.20 -2.99 4.95 -19.74 -0.10 -3.09 16 8 C 0.01 0.17 2.30 -11.54 -0.03 0.14 16 9 H 0.09 1.27 7.04 -2.39 -0.02 1.26 16 10 C -0.15 -2.05 8.81 71.98 0.63 -1.42 16 11 C -0.13 -1.49 4.94 29.85 0.15 -1.34 16 12 C 0.52 8.84 7.57 87.66 0.66 9.51 16 13 O -0.57 -14.02 13.57 -3.04 -0.04 -14.06 16 14 N -0.70 -10.72 5.26 -440.04 -2.32 -13.03 16 15 C 0.13 2.45 4.32 45.52 0.20 2.64 16 16 H 0.09 2.01 7.46 -2.39 -0.02 2.00 16 17 C -0.15 -3.57 7.43 31.12 0.23 -3.34 16 18 C -0.11 -2.85 3.63 -10.27 -0.04 -2.89 16 19 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 20 C 0.16 5.76 6.10 86.38 0.53 6.29 16 21 N -0.76 -34.79 5.41 -343.44 -1.86 -36.64 16 22 C -0.24 -13.50 10.47 84.03 0.88 -12.62 16 23 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 24 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 25 N -0.99 -63.56 13.97 21.65 0.30 -63.26 16 26 Si 0.96 45.19 27.74 68.60 1.90 47.09 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 30 C -0.12 -2.11 7.39 31.12 0.23 -1.88 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.68 5.19 -2.39 -0.01 0.66 16 34 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.10 0.67 7.53 -2.39 -0.02 0.65 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.21 6.08 -2.39 -0.01 1.20 16 39 H 0.06 0.72 6.10 -2.39 -0.01 0.71 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.12 0.83 6.08 -2.39 -0.01 0.81 16 42 H 0.41 4.29 8.70 -92.71 -0.81 3.48 16 43 H 0.08 2.19 7.90 -2.38 -0.02 2.17 16 44 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.02 0.81 7.84 -2.39 -0.02 0.79 16 47 H 0.37 15.88 5.53 -92.71 -0.51 15.36 16 48 H 0.26 15.79 8.31 -92.71 -0.77 15.01 16 49 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 50 H 0.10 1.76 8.10 -2.39 -0.02 1.74 16 Total: -1.00 -77.42 398.71 3.48 -73.94 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.41 Total: 23.97 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 5.69 Total: -11.16 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -4.47 Total: -122.11 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.76 Total: -11.74 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -77.42 3.48 -73.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725359556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.609 kcal (2) G-P(sol) polarization free energy of solvation -77.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds