Wall clock time and date at job start Tue Mar 31 2020 19:12:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.47100 * 119.99840 * 2 1
4 4 O 1.21615 * 119.99854 * 80.51449 * 3 2 1
5 5 N 1.34774 * 120.00150 * 260.50847 * 3 2 1
6 6 C 1.47027 * 125.64479 * 355.00352 * 5 3 2
7 7 C 1.54321 * 107.26709 * 178.97497 * 6 5 3
8 8 C 1.55150 * 102.94607 * 337.80297 * 7 6 5
9 9 H 1.08994 * 111.00740 * 277.39602 * 8 7 6
10 10 C 1.53003 * 111.00706 * 153.57599 * 8 7 6
11 11 N 1.46902 * 109.46944 * 69.58588 * 10 8 7
12 12 C 1.46893 * 110.99948 * 180.02562 * 11 10 8
13 13 C 1.50700 * 109.47029 * 180.02562 * 12 11 10
14 14 O 1.21294 * 120.00276 * 359.97438 * 13 12 11
15 15 N 1.34785 * 119.99952 * 180.02562 * 13 12 11
16 16 C 1.37096 * 119.99728 * 179.97438 * 15 13 12
17 17 H 1.08001 * 120.00466 * 359.97438 * 16 15 13
18 18 C 1.38948 * 119.99776 * 179.97438 * 16 15 13
19 19 N 1.31416 * 119.99873 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 120.00012 * 179.97438 * 18 16 15
21 21 H 1.48506 * 109.46891 * 90.00077 * 20 18 16
22 22 H 1.48502 * 109.47240 * 209.99969 * 20 18 16
23 23 H 1.48495 * 109.47122 * 330.00162 * 20 18 16
24 24 C 1.47460 * 125.63086 * 174.99976 * 5 3 2
25 25 C 1.32989 * 119.99885 * 179.97438 * 2 1 3
26 26 C 1.51402 * 136.31855 * 179.63198 * 25 2 1
27 27 C 1.53373 * 87.51982 * 206.05912 * 26 25 2
28 28 C 1.51413 * 136.31522 * 0.02562 * 25 2 1
29 29 H 1.09008 * 109.46996 * 95.08565 * 1 2 3
30 30 H 1.09002 * 109.47615 * 215.08503 * 1 2 3
31 31 H 1.08994 * 109.47243 * 335.09172 * 1 2 3
32 32 H 1.08999 * 109.88452 * 59.55790 * 6 5 3
33 33 H 1.09003 * 109.88122 * 298.38883 * 6 5 3
34 34 H 1.09004 * 110.71868 * 219.44110 * 7 6 5
35 35 H 1.08996 * 110.87266 * 96.24300 * 7 6 5
36 36 H 1.08993 * 109.47506 * 189.58761 * 10 8 7
37 37 H 1.09006 * 109.46783 * 309.58602 * 10 8 7
38 38 H 1.00904 * 110.99934 * 303.95365 * 11 10 8
39 39 H 1.08997 * 109.47353 * 299.99875 * 12 11 10
40 40 H 1.09003 * 109.47152 * 59.99847 * 12 11 10
41 41 H 0.96999 * 120.00064 * 359.97438 * 15 13 12
42 42 H 0.97009 * 119.99763 * 180.02562 * 19 18 16
43 43 H 1.09002 * 110.34522 * 85.25596 * 24 5 3
44 44 H 1.08999 * 110.41123 * 322.92094 * 24 5 3
45 45 H 1.09004 * 113.56097 * 320.64457 * 26 25 2
46 46 H 1.09000 * 113.56255 * 91.37472 * 26 25 2
47 47 H 1.09000 * 113.96887 * 220.28758 * 27 26 25
48 48 H 1.09003 * 113.71437 * 88.80884 * 27 26 25
49 49 H 1.09002 * 113.55737 * 268.62028 * 28 25 2
50 50 H 1.09000 * 113.56207 * 39.28493 * 28 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2425 1.2739 0.0000
4 8 2.3962 1.8873 1.0388
5 7 2.7461 1.7613 -1.1512
6 6 2.7248 1.0781 -2.4529
7 6 3.3877 2.0231 -3.4771
8 6 3.2364 3.4170 -2.8127
9 1 2.2488 3.8362 -3.0047
10 6 4.3353 4.3715 -3.2842
11 7 4.1143 4.7136 -4.6956
12 6 5.1531 5.6302 -5.1840
13 6 4.8933 5.9583 -6.6317
14 8 3.9371 5.4756 -7.2009
15 7 5.7241 6.7873 -7.2944
16 6 5.4880 7.0853 -8.6116
17 1 4.6366 6.6555 -9.1184
18 6 6.3441 7.9404 -9.2947
19 7 7.3804 8.4630 -8.6782
20 14 6.0229 8.3459 -11.0896
21 1 5.1544 9.5473 -11.1779
22 1 7.3126 8.6161 -11.7746
23 1 5.3465 7.1969 -11.7433
24 6 3.4096 3.0682 -1.3133
25 6 2.1720 -1.1517 0.0005
26 6 3.6250 -1.5772 -0.0060
27 6 3.1707 -2.8820 -0.6719
28 6 1.8137 -2.6229 0.0007
29 1 -0.3633 -0.0911 -1.0237
30 1 -0.3634 -0.8409 0.5907
31 1 -0.3633 0.9320 0.4328
32 1 1.6954 0.8749 -2.7481
33 1 3.2860 0.1457 -2.3914
34 1 2.8594 1.9907 -4.4300
35 1 4.4398 1.7725 -3.6125
36 1 4.3108 5.2797 -2.6821
37 1 5.3068 3.8893 -3.1750
38 1 4.0684 3.8827 -5.2662
39 1 5.1346 6.5472 -4.5951
40 1 6.1301 5.1565 -5.0880
41 1 6.4890 7.1731 -6.8394
42 1 7.9779 9.0603 -9.1550
43 1 4.4673 2.9901 -1.0617
44 1 2.9253 3.8203 -0.6905
45 1 4.2567 -0.9605 -0.6454
46 1 4.0419 -1.7190 0.9910
47 1 3.6834 -3.7699 -0.3017
48 1 3.1394 -2.8310 -1.7602
49 1 1.7336 -3.0516 0.9997
50 1 0.9595 -2.8634 -0.6322
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001752938113.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:12:55
Heat of formation + Delta-G solvation = -35.284212 kcal
Electronic energy + Delta-G solvation = -28161.333314 eV
Core-core repulsion = 24189.182636 eV
Total energy + Delta-G solvation = -3972.150678 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-40.57903 -39.06082 -38.36018 -37.77625 -35.37867 -33.88918 -33.49088 -31.76513
-31.18326 -29.73071 -27.61858 -26.83560 -25.96371 -25.09533 -23.95422 -23.08732
-22.43888 -20.51076 -20.24902 -19.23143 -18.24908 -17.89552 -16.91338 -16.82308
-16.14201 -15.97743 -15.74010 -15.47820 -14.82084 -14.70506 -14.47249 -14.03961
-13.89816 -13.68438 -13.60171 -13.38830 -13.34648 -13.01361 -12.92508 -12.68927
-12.57472 -12.39755 -12.32972 -12.06498 -12.04197 -11.57781 -11.52979 -11.39583
-11.23089 -11.05985 -10.92804 -10.86045 -10.82969 -10.40401 -10.22908 -10.03297
-9.52027 -9.18578 -8.91576 -8.48630 -8.09035 -7.97117 -6.42742 -3.83636
1.35298 2.32147 2.73665 3.17185 3.25854 3.31484 3.83545 3.89484
4.00405 4.06878 4.20908 4.25085 4.30937 4.40743 4.62691 4.66025
4.78549 4.93251 4.98050 5.08280 5.11319 5.16087 5.18965 5.22916
5.24437 5.25096 5.29567 5.35600 5.40585 5.43854 5.50637 5.52460
5.55823 5.63857 5.69609 5.76890 5.77927 5.80944 5.90203 5.96839
6.02533 6.14546 6.25699 6.34020 7.17065 7.21692 7.54171 7.62809
7.86808 8.05176 8.60076 9.16740 9.53190 10.04475 10.74924
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.025847 B = 0.001692 C = 0.001660
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.058011 B =16542.658879 C =16865.097885
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.097 4.097
2 C -0.136 4.136
3 C 0.579 3.421
4 O -0.537 6.537
5 N -0.612 5.612
6 C 0.105 3.895
7 C -0.132 4.132
8 C -0.096 4.096
9 H 0.097 0.903
10 C 0.070 3.930
11 N -0.667 5.667
12 C 0.050 3.950
13 C 0.440 3.560
14 O -0.584 6.584
15 N -0.564 5.564
16 C -0.300 4.300
17 H 0.103 0.897
18 C 0.022 3.978
19 N -0.902 5.902
20 Si 0.931 3.069
21 H -0.278 1.278
22 H -0.284 1.284
23 H -0.270 1.270
24 C 0.111 3.889
25 C -0.120 4.120
26 C -0.109 4.109
27 C -0.136 4.136
28 C -0.099 4.099
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.068 0.932
32 H 0.070 0.930
33 H 0.067 0.933
34 H 0.091 0.909
35 H 0.076 0.924
36 H 0.076 0.924
37 H 0.030 0.970
38 H 0.349 0.651
39 H 0.087 0.913
40 H 0.043 0.957
41 H 0.392 0.608
42 H 0.271 0.729
43 H 0.069 0.931
44 H 0.081 0.919
45 H 0.072 0.928
46 H 0.096 0.904
47 H 0.077 0.923
48 H 0.086 0.914
49 H 0.095 0.905
50 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.352 -20.869 17.828 28.415
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.139 4.139
3 C 0.368 3.632
4 O -0.414 6.414
5 N -0.346 5.346
6 C -0.018 4.018
7 C -0.170 4.170
8 C -0.116 4.116
9 H 0.116 0.884
10 C -0.060 4.060
11 N -0.300 5.300
12 C -0.082 4.082
13 C 0.226 3.774
14 O -0.468 6.468
15 N -0.200 5.200
16 C -0.429 4.429
17 H 0.121 0.879
18 C -0.180 4.180
19 N -0.543 5.543
20 Si 0.758 3.242
21 H -0.204 1.204
22 H -0.209 1.209
23 H -0.194 1.194
24 C -0.012 4.012
25 C -0.121 4.121
26 C -0.146 4.146
27 C -0.174 4.174
28 C -0.136 4.136
29 H 0.091 0.909
30 H 0.090 0.910
31 H 0.087 0.913
32 H 0.088 0.912
33 H 0.085 0.915
34 H 0.109 0.891
35 H 0.095 0.905
36 H 0.094 0.906
37 H 0.048 0.952
38 H 0.168 0.832
39 H 0.105 0.895
40 H 0.061 0.939
41 H 0.226 0.774
42 H 0.081 0.919
43 H 0.087 0.913
44 H 0.099 0.901
45 H 0.091 0.909
46 H 0.114 0.886
47 H 0.096 0.904
48 H 0.104 0.896
49 H 0.114 0.886
50 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -8.232 -20.267 18.124 28.408
hybrid contribution 1.259 -0.016 -0.720 1.451
sum -6.972 -20.283 17.404 27.621
Atomic orbital electron populations
1.20550 0.89103 1.03269 1.02461 1.20374 0.96453 0.90713 1.06332
1.18007 0.78006 0.85027 0.82186 1.90823 1.59242 1.60422 1.30945
1.48513 1.58049 1.19433 1.08589 1.22045 1.01279 0.95996 0.82507
1.22763 1.01671 0.94048 0.98530 1.22384 1.01407 0.94884 0.92913
0.88438 1.21851 0.95282 0.98213 0.90645 1.60045 1.48198 1.20091
1.01663 1.21673 0.92813 0.97699 0.96045 1.19808 0.85581 0.84269
0.87755 1.90519 1.31068 1.56029 1.69196 1.41869 1.25417 1.41240
1.11492 1.19704 1.11357 1.25660 0.86206 0.87909 1.25270 0.95501
0.96727 1.00477 1.69618 1.14842 1.32117 1.37705 0.85851 0.77572
0.78983 0.81832 1.20380 1.20945 1.19436 1.22268 0.97673 0.84722
0.96531 1.23039 0.97628 0.93895 0.97531 1.22200 0.93695 0.96979
1.01722 1.22641 0.96686 0.97613 1.00424 1.22169 0.98354 0.91498
1.01585 0.90926 0.90991 0.91270 0.91169 0.91506 0.89088 0.90527
0.90589 0.95163 0.83188 0.89526 0.93864 0.77446 0.91869 0.91270
0.90106 0.90925 0.88618 0.90450 0.89585 0.88640 0.90515
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.71 9.96 36.01 0.36 -0.35 16
2 C -0.14 -1.28 4.94 -102.85 -0.51 -1.79 16
3 C 0.58 7.05 7.12 -12.67 -0.09 6.96 16
4 O -0.54 -8.61 17.40 5.26 0.09 -8.51 16
5 N -0.61 -6.37 3.33 -171.88 -0.57 -6.94 16
6 C 0.10 0.85 6.46 -3.06 -0.02 0.83 16
7 C -0.13 -1.13 5.76 -24.90 -0.14 -1.27 16
8 C -0.10 -0.95 3.27 -88.47 -0.29 -1.24 16
9 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16
10 C 0.07 0.79 5.18 -3.82 -0.02 0.77 16
11 N -0.67 -10.20 6.13 -115.06 -0.70 -10.90 16
12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16
13 C 0.44 10.27 7.82 -10.98 -0.09 10.18 16
14 O -0.58 -15.65 15.78 5.55 0.09 -15.57 16
15 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16
16 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16
17 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16
18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16
19 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16
20 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16
21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
24 C 0.11 1.13 6.36 -2.51 -0.02 1.12 16
25 C -0.12 -0.95 6.64 -100.48 -0.67 -1.61 16
26 C -0.11 -0.76 7.83 -27.56 -0.22 -0.98 16
27 C -0.14 -0.70 8.17 -26.21 -0.21 -0.91 16
28 C -0.10 -0.54 7.81 -27.41 -0.21 -0.75 16
29 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16
30 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16
31 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16
32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.07 0.49 7.70 -51.93 -0.40 0.09 16
34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
35 H 0.08 0.63 7.96 -51.93 -0.41 0.21 16
36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
37 H 0.03 0.32 8.04 -51.93 -0.42 -0.10 16
38 H 0.35 5.41 7.80 -39.29 -0.31 5.10 16
39 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16
40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16
41 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16
42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16
43 H 0.07 0.68 8.04 -51.93 -0.42 0.27 16
44 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16
45 H 0.07 0.55 7.70 -51.93 -0.40 0.15 16
46 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
47 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
48 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16
49 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16
50 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16
LS Contribution 413.04 15.07 6.22 6.22
Total: -1.00 -33.52 413.04 -10.14 -43.67
By element:
Atomic # 1 Polarization: 18.76 SS G_CDS: -8.52 Total: 10.24 kcal
Atomic # 6 Polarization: 6.21 SS G_CDS: -2.40 Total: 3.81 kcal
Atomic # 7 Polarization: -55.17 SS G_CDS: -0.61 Total: -55.78 kcal
Atomic # 8 Polarization: -24.26 SS G_CDS: 0.18 Total: -24.08 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 6.22 Total: 6.22 kcal
Total: -33.52 -10.14 -43.67 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752938113.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.383 kcal
(2) G-P(sol) polarization free energy of solvation -33.523 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.284 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds