Wall clock time and date at job start Tue Mar 31 2020 19:12:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.47100 * 119.99840 * 2 1
4 4 O 1.21615 * 119.99854 * 80.51449 * 3 2 1
5 5 N 1.34774 * 120.00150 * 260.50847 * 3 2 1
6 6 C 1.47027 * 125.64479 * 355.00352 * 5 3 2
7 7 C 1.54321 * 107.26709 * 178.97497 * 6 5 3
8 8 C 1.55150 * 102.94607 * 337.80297 * 7 6 5
9 9 H 1.08994 * 111.00740 * 277.39602 * 8 7 6
10 10 C 1.53003 * 111.00706 * 153.57599 * 8 7 6
11 11 N 1.46902 * 109.46944 * 69.58588 * 10 8 7
12 12 C 1.46893 * 110.99948 * 180.02562 * 11 10 8
13 13 C 1.50700 * 109.47029 * 180.02562 * 12 11 10
14 14 O 1.21294 * 120.00276 * 359.97438 * 13 12 11
15 15 N 1.34785 * 119.99952 * 180.02562 * 13 12 11
16 16 C 1.37096 * 119.99728 * 179.97438 * 15 13 12
17 17 H 1.08001 * 120.00466 * 359.97438 * 16 15 13
18 18 C 1.38948 * 119.99776 * 179.97438 * 16 15 13
19 19 N 1.31416 * 119.99873 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 120.00012 * 179.97438 * 18 16 15
21 21 H 1.48506 * 109.46891 * 90.00077 * 20 18 16
22 22 H 1.48502 * 109.47240 * 209.99969 * 20 18 16
23 23 H 1.48495 * 109.47122 * 330.00162 * 20 18 16
24 24 C 1.47460 * 125.63086 * 174.99976 * 5 3 2
25 25 C 1.32989 * 119.99885 * 179.97438 * 2 1 3
26 26 C 1.51402 * 136.31855 * 179.63198 * 25 2 1
27 27 C 1.53373 * 87.51982 * 206.05912 * 26 25 2
28 28 C 1.51413 * 136.31522 * 0.02562 * 25 2 1
29 29 H 1.09008 * 109.46996 * 95.08565 * 1 2 3
30 30 H 1.09002 * 109.47615 * 215.08503 * 1 2 3
31 31 H 1.08994 * 109.47243 * 335.09172 * 1 2 3
32 32 H 1.08999 * 109.88452 * 59.55790 * 6 5 3
33 33 H 1.09003 * 109.88122 * 298.38883 * 6 5 3
34 34 H 1.09004 * 110.71868 * 219.44110 * 7 6 5
35 35 H 1.08996 * 110.87266 * 96.24300 * 7 6 5
36 36 H 1.08993 * 109.47506 * 189.58761 * 10 8 7
37 37 H 1.09006 * 109.46783 * 309.58602 * 10 8 7
38 38 H 1.00904 * 110.99934 * 303.95365 * 11 10 8
39 39 H 1.08997 * 109.47353 * 299.99875 * 12 11 10
40 40 H 1.09003 * 109.47152 * 59.99847 * 12 11 10
41 41 H 0.96999 * 120.00064 * 359.97438 * 15 13 12
42 42 H 0.97009 * 119.99763 * 180.02562 * 19 18 16
43 43 H 1.09002 * 110.34522 * 85.25596 * 24 5 3
44 44 H 1.08999 * 110.41123 * 322.92094 * 24 5 3
45 45 H 1.09004 * 113.56097 * 320.64457 * 26 25 2
46 46 H 1.09000 * 113.56255 * 91.37472 * 26 25 2
47 47 H 1.09000 * 113.96887 * 220.28758 * 27 26 25
48 48 H 1.09003 * 113.71437 * 88.80884 * 27 26 25
49 49 H 1.09002 * 113.55737 * 268.62028 * 28 25 2
50 50 H 1.09000 * 113.56207 * 39.28493 * 28 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2425 1.2739 0.0000
4 8 2.3962 1.8873 1.0388
5 7 2.7461 1.7613 -1.1512
6 6 2.7248 1.0781 -2.4529
7 6 3.3877 2.0231 -3.4771
8 6 3.2364 3.4170 -2.8127
9 1 2.2488 3.8362 -3.0047
10 6 4.3353 4.3715 -3.2842
11 7 4.1143 4.7136 -4.6956
12 6 5.1531 5.6302 -5.1840
13 6 4.8933 5.9583 -6.6317
14 8 3.9371 5.4756 -7.2009
15 7 5.7241 6.7873 -7.2944
16 6 5.4880 7.0853 -8.6116
17 1 4.6366 6.6555 -9.1184
18 6 6.3441 7.9404 -9.2947
19 7 7.3804 8.4630 -8.6782
20 14 6.0229 8.3459 -11.0896
21 1 5.1544 9.5473 -11.1779
22 1 7.3126 8.6161 -11.7746
23 1 5.3465 7.1969 -11.7433
24 6 3.4096 3.0682 -1.3133
25 6 2.1720 -1.1517 0.0005
26 6 3.6250 -1.5772 -0.0060
27 6 3.1707 -2.8820 -0.6719
28 6 1.8137 -2.6229 0.0007
29 1 -0.3633 -0.0911 -1.0237
30 1 -0.3634 -0.8409 0.5907
31 1 -0.3633 0.9320 0.4328
32 1 1.6954 0.8749 -2.7481
33 1 3.2860 0.1457 -2.3914
34 1 2.8594 1.9907 -4.4300
35 1 4.4398 1.7725 -3.6125
36 1 4.3108 5.2797 -2.6821
37 1 5.3068 3.8893 -3.1750
38 1 4.0684 3.8827 -5.2662
39 1 5.1346 6.5472 -4.5951
40 1 6.1301 5.1565 -5.0880
41 1 6.4890 7.1731 -6.8394
42 1 7.9779 9.0603 -9.1550
43 1 4.4673 2.9901 -1.0617
44 1 2.9253 3.8203 -0.6905
45 1 4.2567 -0.9605 -0.6454
46 1 4.0419 -1.7190 0.9910
47 1 3.6834 -3.7699 -0.3017
48 1 3.1394 -2.8310 -1.7602
49 1 1.7336 -3.0516 0.9997
50 1 0.9595 -2.8634 -0.6322
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001752938113.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:12:54
Heat of formation + Delta-G solvation = -57.719039 kcal
Electronic energy + Delta-G solvation = -28162.306161 eV
Core-core repulsion = 24189.182636 eV
Total energy + Delta-G solvation = -3973.123525 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.39700 -40.17293 -39.58997 -38.78027 -36.63181 -35.80569 -34.20100 -33.28339
-32.63432 -30.54364 -28.81305 -27.63041 -26.58013 -26.43331 -25.09545 -24.12717
-23.07987 -21.42476 -21.02031 -20.89079 -19.89352 -18.99087 -18.07788 -17.52939
-17.34298 -16.92290 -16.78558 -16.43112 -16.30708 -16.02919 -15.67414 -15.26500
-15.16325 -14.76425 -14.53871 -14.35810 -14.18174 -14.01628 -13.78256 -13.46539
-13.43012 -13.34871 -13.30665 -13.25345 -12.96735 -12.93384 -12.70612 -12.53562
-12.41273 -12.15888 -12.09312 -11.86628 -11.73114 -11.65469 -11.49735 -11.42100
-10.85680 -10.34071 -10.00821 -9.82710 -9.74001 -9.31865 -8.46031 -5.94736
0.72250 1.38804 1.42560 1.42911 1.55281 1.93754 2.06203 2.29824
2.89354 3.20595 3.21532 3.45911 3.52234 3.55886 3.67079 3.79384
3.94334 4.01233 4.21881 4.24694 4.31012 4.33645 4.36673 4.40897
4.48543 4.54765 4.59313 4.67359 4.70775 4.72452 4.73175 4.74215
4.78047 4.86958 4.91961 4.98423 4.98994 5.06717 5.11814 5.18546
5.26882 5.33522 5.36674 5.41716 5.75408 5.88686 6.10278 6.37400
6.44136 6.60786 6.97406 7.13281 7.57219 8.12228 8.71253
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.025847 B = 0.001692 C = 0.001660
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.058011 B =16542.658879 C =16865.097885
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.092 4.092
2 C -0.160 4.160
3 C 0.574 3.426
4 O -0.588 6.588
5 N -0.611 5.611
6 C 0.107 3.893
7 C -0.127 4.127
8 C -0.087 4.087
9 H 0.085 0.915
10 C 0.074 3.926
11 N -0.681 5.681
12 C 0.064 3.936
13 C 0.438 3.562
14 O -0.623 6.623
15 N -0.574 5.574
16 C -0.334 4.334
17 H 0.080 0.920
18 C -0.014 4.014
19 N -0.920 5.920
20 Si 0.993 3.007
21 H -0.272 1.272
22 H -0.271 1.271
23 H -0.272 1.272
24 C 0.111 3.889
25 C -0.117 4.117
26 C -0.119 4.119
27 C -0.127 4.127
28 C -0.093 4.093
29 H 0.085 0.915
30 H 0.086 0.914
31 H 0.053 0.947
32 H 0.079 0.921
33 H 0.080 0.920
34 H 0.092 0.908
35 H 0.085 0.915
36 H 0.079 0.921
37 H 0.047 0.953
38 H 0.347 0.653
39 H 0.103 0.897
40 H 0.068 0.932
41 H 0.396 0.604
42 H 0.277 0.723
43 H 0.075 0.925
44 H 0.067 0.933
45 H 0.064 0.936
46 H 0.096 0.904
47 H 0.091 0.909
48 H 0.091 0.909
49 H 0.106 0.894
50 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.058 -22.502 17.614 29.435
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.163 4.163
3 C 0.364 3.636
4 O -0.469 6.469
5 N -0.343 5.343
6 C -0.015 4.015
7 C -0.165 4.165
8 C -0.107 4.107
9 H 0.103 0.897
10 C -0.055 4.055
11 N -0.314 5.314
12 C -0.068 4.068
13 C 0.225 3.775
14 O -0.509 6.509
15 N -0.211 5.211
16 C -0.463 4.463
17 H 0.098 0.902
18 C -0.214 4.214
19 N -0.561 5.561
20 Si 0.817 3.183
21 H -0.198 1.198
22 H -0.196 1.196
23 H -0.197 1.197
24 C -0.012 4.012
25 C -0.118 4.118
26 C -0.156 4.156
27 C -0.164 4.164
28 C -0.129 4.129
29 H 0.104 0.896
30 H 0.105 0.895
31 H 0.072 0.928
32 H 0.097 0.903
33 H 0.098 0.902
34 H 0.110 0.890
35 H 0.103 0.897
36 H 0.097 0.903
37 H 0.065 0.935
38 H 0.166 0.834
39 H 0.121 0.879
40 H 0.086 0.914
41 H 0.230 0.770
42 H 0.087 0.913
43 H 0.093 0.907
44 H 0.086 0.914
45 H 0.082 0.918
46 H 0.114 0.886
47 H 0.109 0.891
48 H 0.109 0.891
49 H 0.124 0.876
50 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -7.922 -21.907 17.908 29.383
hybrid contribution 1.189 0.461 -0.611 1.414
sum -6.733 -21.446 17.297 28.363
Atomic orbital electron populations
1.20556 0.87856 1.03087 1.03430 1.20379 0.97256 0.89823 1.08838
1.18545 0.77619 0.85677 0.81751 1.90782 1.61280 1.62140 1.32704
1.48614 1.57178 1.19445 1.09077 1.22149 1.02095 0.96139 0.81143
1.22747 1.02287 0.92982 0.98437 1.22212 1.00314 0.95418 0.92716
0.89661 1.21878 0.96478 0.98880 0.88247 1.60021 1.47921 1.20024
1.03438 1.21531 0.94482 0.99188 0.91601 1.20893 0.84165 0.82480
0.89949 1.90487 1.32525 1.57053 1.70840 1.41944 1.26074 1.42054
1.11035 1.19674 1.11640 1.27231 0.87785 0.90243 1.26047 0.94990
0.95987 1.04330 1.69678 1.15154 1.32146 1.39156 0.84923 0.77891
0.78574 0.76922 1.19774 1.19575 1.19665 1.22233 0.97862 0.84652
0.96437 1.23397 0.98412 0.94781 0.95232 1.22327 0.93163 0.98167
1.01916 1.22634 0.96221 0.96919 1.00598 1.22241 0.99048 0.89159
1.02498 0.89641 0.89497 0.92793 0.90273 0.90195 0.88951 0.89687
0.90254 0.93475 0.83416 0.87930 0.91369 0.76974 0.91333 0.90681
0.91407 0.91762 0.88609 0.89075 0.89076 0.87569 0.89221
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.29 9.96 71.24 0.71 -0.58 16
2 C -0.16 -2.93 4.94 -18.70 -0.09 -3.02 16
3 C 0.57 14.19 7.12 86.57 0.62 14.81 16
4 O -0.59 -19.68 17.40 -4.08 -0.07 -19.75 16
5 N -0.61 -12.52 3.33 -815.95 -2.71 -15.24 16
6 C 0.11 1.59 6.46 86.73 0.56 2.15 16
7 C -0.13 -1.96 5.76 31.78 0.18 -1.77 16
8 C -0.09 -1.64 3.27 -9.40 -0.03 -1.67 16
9 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
10 C 0.07 1.55 5.18 86.30 0.45 2.00 16
11 N -0.68 -19.93 6.13 -517.94 -3.17 -23.10 16
12 C 0.06 2.11 6.17 85.56 0.53 2.64 16
13 C 0.44 20.42 7.82 87.66 0.69 21.11 16
14 O -0.62 -33.87 15.78 -3.07 -0.05 -33.92 16
15 N -0.57 -29.13 5.29 -306.97 -1.62 -30.75 16
16 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16
17 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16
18 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16
19 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16
20 Si 0.99 42.64 29.55 68.60 2.03 44.66 16
21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16
22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16
23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16
24 C 0.11 2.24 6.36 86.85 0.55 2.79 16
25 C -0.12 -1.68 6.64 -17.17 -0.11 -1.79 16
26 C -0.12 -1.49 7.83 30.06 0.24 -1.26 16
27 C -0.13 -0.96 8.17 30.93 0.25 -0.71 16
28 C -0.09 -0.76 7.81 30.16 0.24 -0.52 16
29 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16
30 H 0.09 0.91 8.05 -2.39 -0.02 0.89 16
31 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16
32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
33 H 0.08 1.01 7.70 -2.39 -0.02 0.99 16
34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16
35 H 0.08 1.20 7.96 -2.39 -0.02 1.18 16
36 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
37 H 0.05 0.86 8.04 -2.38 -0.02 0.84 16
38 H 0.35 10.37 7.80 -89.69 -0.70 9.67 16
39 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16
40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16
41 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16
42 H 0.28 13.94 8.31 -92.70 -0.77 13.17 16
43 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16
44 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16
45 H 0.06 0.90 7.70 -2.38 -0.02 0.89 16
46 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16
47 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16
48 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16
49 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16
50 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16
Total: -1.00 -73.74 413.04 0.24 -73.49
By element:
Atomic # 1 Polarization: 38.31 SS G_CDS: -0.49 Total: 37.82 kcal
Atomic # 6 Polarization: 9.84 SS G_CDS: 6.05 Total: 15.89 kcal
Atomic # 7 Polarization: -110.98 SS G_CDS: -7.23 Total: -118.21 kcal
Atomic # 8 Polarization: -53.55 SS G_CDS: -0.12 Total: -53.66 kcal
Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal
Total: -73.74 0.24 -73.49 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752938113.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.775 kcal
(2) G-P(sol) polarization free energy of solvation -73.735 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.960 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.494 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds