Wall clock time and date at job start Tue Mar 31 2020 20:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 N 1.30018 * 127.33232 * 90.02768 * 3 2 1 5 5 O 1.20656 * 112.29927 * 179.97438 * 4 3 2 6 6 C 1.33496 * 113.15912 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.83039 * 180.02562 * 6 5 4 8 8 C 1.37360 * 106.33632 * 359.74051 * 6 5 4 9 9 C 1.47405 * 128.56170 * 180.23859 * 8 6 5 10 10 O 1.21601 * 120.00053 * 270.16245 * 9 8 6 11 11 N 1.34778 * 119.99781 * 90.16103 * 9 8 6 12 12 C 1.46924 * 120.63332 * 0.02562 * 11 9 8 13 13 C 1.53192 * 108.77398 * 233.58242 * 12 11 9 14 14 C 1.53033 * 109.31250 * 305.36506 * 13 12 11 15 15 C 1.53036 * 109.54140 * 61.36569 * 14 13 12 16 16 H 1.09003 * 109.49579 * 58.61676 * 15 14 13 17 17 C 1.52997 * 109.50004 * 178.68055 * 15 14 13 18 18 H 1.09000 * 109.47580 * 305.00102 * 17 15 14 19 19 C 1.53008 * 109.46978 * 65.00165 * 17 15 14 20 20 N 1.46505 * 109.47326 * 184.99758 * 17 15 14 21 21 C 1.36939 * 119.99727 * 155.00066 * 20 17 15 22 22 H 1.07998 * 120.00345 * 0.02562 * 21 20 17 23 23 C 1.38810 * 119.99555 * 180.02562 * 21 20 17 24 24 N 1.31617 * 120.00393 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47156 * 89.99963 * 25 23 21 27 27 H 1.48501 * 109.47223 * 210.00074 * 25 23 21 28 28 H 1.48501 * 109.47153 * 329.99865 * 25 23 21 29 29 C 1.46928 * 120.62721 * 179.71671 * 11 9 8 30 30 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 31 31 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 33 33 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 35 35 H 1.08996 * 109.47222 * 359.96728 * 7 6 5 36 36 H 1.08995 * 109.47084 * 119.97138 * 7 6 5 37 37 H 1.08999 * 109.46743 * 239.97127 * 7 6 5 38 38 H 1.09000 * 109.58485 * 353.37389 * 12 11 9 39 39 H 1.09003 * 109.58976 * 113.79144 * 12 11 9 40 40 H 1.09001 * 109.49349 * 65.31781 * 13 12 11 41 41 H 1.09000 * 109.49249 * 185.41099 * 13 12 11 42 42 H 1.09001 * 109.46008 * 181.38795 * 14 13 12 43 43 H 1.09004 * 109.45841 * 301.35405 * 14 13 12 44 44 H 1.09000 * 109.47016 * 59.99592 * 19 17 15 45 45 H 1.09002 * 109.46957 * 180.02562 * 19 17 15 46 46 H 1.08997 * 109.46926 * 299.99690 * 19 17 15 47 47 H 0.96999 * 119.99714 * 335.01003 * 20 17 15 48 48 H 0.96997 * 120.00426 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.59043 * 246.20121 * 29 11 9 50 50 H 1.08998 * 109.58618 * 6.63499 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2956 2.1640 1.0338 5 8 2.6844 3.2625 0.7209 6 6 2.7466 3.4407 -0.6007 7 6 3.1879 4.6866 -1.3245 8 6 2.3345 2.2602 -1.1695 9 6 2.2207 1.9196 -2.5991 10 8 1.1811 2.1307 -3.1936 11 7 3.2690 1.3744 -3.2475 12 6 4.5314 1.1130 -2.5428 13 6 5.6746 1.7778 -3.3161 14 6 5.6529 1.2931 -4.7674 15 6 4.3292 1.6952 -5.4217 16 1 4.2163 2.7785 -5.3785 17 6 4.3219 1.2390 -6.8821 18 1 5.1979 1.6395 -7.3923 19 6 4.3532 -0.2897 -6.9390 20 7 3.1076 1.7273 -7.5403 21 6 3.0901 1.9084 -8.8976 22 1 3.9713 1.6908 -9.4828 23 6 1.9397 2.3716 -9.5211 24 7 0.8660 2.6373 -8.8079 25 14 1.9160 2.6192 -11.3725 26 1 1.4713 1.3662 -12.0339 27 1 0.9775 3.7186 -11.7129 28 1 3.2803 2.9698 -11.8425 29 6 3.1687 1.0238 -4.6708 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.4593 5.4522 -0.5977 36 1 4.0506 4.4572 -1.9499 37 1 2.3728 5.0517 -1.9494 38 1 4.4809 1.5285 -1.5363 39 1 4.7038 0.0381 -2.4882 40 1 5.5487 2.8603 -3.2921 41 1 6.6270 1.5115 -2.8577 42 1 6.4803 1.7457 -5.3139 43 1 5.7537 0.2079 -4.7894 44 1 3.4772 -0.6903 -6.4288 45 1 4.3485 -0.6147 -7.9794 46 1 5.2567 -0.6531 -6.4493 47 1 2.3161 1.9226 -7.0147 48 1 0.0620 2.9606 -9.2437 49 1 3.2325 -0.0582 -4.7860 50 1 2.2189 1.3805 -5.0689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753801215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:11 Heat of formation + Delta-G solvation = 22.997890 kcal Electronic energy + Delta-G solvation = -30547.643593 eV Core-core repulsion = 26578.020217 eV Total energy + Delta-G solvation = -3969.623376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.03550 -40.15398 -37.88200 -35.55540 -35.39278 -33.81551 -32.88914 -31.92705 -31.52064 -29.85811 -28.36885 -27.77127 -26.05081 -24.79536 -24.47499 -23.39437 -23.16887 -21.22549 -20.30434 -19.53693 -18.65817 -18.04293 -17.62816 -17.10293 -16.49672 -15.95926 -15.17161 -14.85950 -14.83348 -14.53786 -14.44523 -14.08934 -13.79932 -13.75699 -13.57959 -13.45201 -13.03437 -12.98239 -12.91432 -12.81363 -12.62565 -12.48624 -11.95072 -11.81083 -11.71392 -11.56019 -11.20843 -11.04826 -11.02239 -10.85366 -10.66689 -10.46889 -10.29599 -10.26316 -10.17542 -9.99641 -9.82061 -9.55151 -9.42169 -8.88736 -8.51976 -6.92936 -5.71470 -3.01290 1.15070 1.74568 2.43698 2.65897 3.09839 3.45496 3.50339 3.52471 3.84273 4.06668 4.45648 4.59529 4.71452 4.72805 4.84907 4.91440 4.96446 5.00973 5.09060 5.12944 5.16267 5.19990 5.29939 5.34778 5.42030 5.58495 5.59979 5.60760 5.63553 5.70295 5.74383 5.81109 5.81790 5.84616 5.92741 6.01756 6.05395 6.09608 6.22535 6.33498 6.36116 6.54000 6.61210 6.73104 6.88548 7.11375 7.39002 7.73240 8.05109 8.15879 8.46072 9.57115 10.14904 10.48947 11.50576 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.003115 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.892326 B = 8987.663672 C = 9435.751130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C 0.057 3.943 4 N -0.356 5.356 5 O 0.094 5.906 6 C 0.014 3.986 7 C -0.080 4.080 8 C -0.240 4.240 9 C 0.594 3.406 10 O -0.514 6.514 11 N -0.599 5.599 12 C 0.109 3.891 13 C -0.133 4.133 14 C -0.114 4.114 15 C -0.103 4.103 16 H 0.075 0.925 17 C 0.180 3.820 18 H 0.049 0.951 19 C -0.170 4.170 20 N -0.725 5.725 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.115 3.885 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.038 0.962 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.074 0.926 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.279 -2.726 20.134 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 C -0.105 4.105 4 N -0.062 5.062 5 O 0.033 5.967 6 C -0.049 4.049 7 C -0.138 4.138 8 C -0.247 4.247 9 C 0.379 3.621 10 O -0.389 6.389 11 N -0.332 5.332 12 C -0.014 4.014 13 C -0.171 4.171 14 C -0.152 4.152 15 C -0.123 4.123 16 H 0.093 0.907 17 C 0.070 3.930 18 H 0.067 0.933 19 C -0.230 4.230 20 N -0.367 5.367 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.006 4.006 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.092 0.908 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.677 -2.738 20.933 22.825 hybrid contribution -0.337 0.083 -1.634 1.670 sum 8.341 -2.654 19.299 21.191 Atomic orbital electron populations 1.21737 0.93360 1.02632 1.02924 1.19987 0.97022 0.87431 1.03921 1.24747 1.00563 0.98726 0.86513 1.73587 1.16705 0.92590 1.23353 1.84527 1.62850 1.26714 1.22653 1.24615 0.99009 0.97675 0.83592 1.20496 1.03274 0.90667 0.99316 1.21927 1.11958 0.95339 0.95479 1.16945 0.83698 0.77651 0.83837 1.90895 1.28307 1.52441 1.67220 1.48107 1.12286 1.61229 1.11556 1.21701 0.83541 1.00518 0.95635 1.21921 0.97639 1.00889 0.96657 1.21614 0.97873 1.01348 0.94392 1.21873 0.93509 1.00826 0.96073 0.90670 1.20174 0.91613 0.91979 0.89254 0.93275 1.22585 0.99418 0.99538 1.01451 1.42495 1.10587 1.78513 1.05127 1.19208 0.97342 1.36878 0.83725 0.91267 1.24738 0.96172 1.02241 0.97675 1.69669 1.02571 1.51282 1.34195 0.86242 0.77074 0.77368 0.85796 1.21800 1.21835 1.20840 1.22037 1.01386 0.99743 0.77386 0.91615 0.91362 0.92400 0.89488 0.89628 0.89237 0.88668 0.88314 0.90628 0.91245 0.91574 0.90897 0.91491 0.91442 0.93238 0.92862 0.94326 0.78086 0.93496 0.90789 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.89 37.16 0.37 -1.13 16 2 C -0.05 -0.46 6.55 -27.88 -0.18 -0.64 16 3 C 0.06 0.70 6.84 -79.77 -0.55 0.15 16 4 N -0.36 -4.51 12.01 34.78 0.42 -4.09 16 5 O 0.09 1.10 11.06 18.64 0.21 1.31 16 6 C 0.01 0.16 7.45 -34.63 -0.26 -0.10 16 7 C -0.08 -0.65 10.33 36.00 0.37 -0.28 16 8 C -0.24 -3.13 4.22 -102.89 -0.43 -3.56 16 9 C 0.59 9.22 7.52 -12.53 -0.09 9.12 16 10 O -0.51 -10.36 16.52 5.28 0.09 -10.27 16 11 N -0.60 -8.13 2.97 -173.75 -0.52 -8.65 16 12 C 0.11 1.10 6.34 -3.71 -0.02 1.07 16 13 C -0.13 -1.23 6.08 -26.62 -0.16 -1.40 16 14 C -0.11 -1.30 4.89 -26.70 -0.13 -1.43 16 15 C -0.10 -1.58 2.28 -90.26 -0.21 -1.78 16 16 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 17 C 0.18 3.38 2.67 -67.92 -0.18 3.20 16 18 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 19 C -0.17 -2.87 8.76 37.16 0.33 -2.55 16 20 N -0.73 -17.82 5.06 -53.42 -0.27 -18.09 16 21 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 25 Si 0.90 22.46 29.55 -169.99 -5.02 17.44 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.12 1.83 5.18 -3.46 -0.02 1.81 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.71 6.26 -51.93 -0.33 0.39 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.73 6.63 -51.93 -0.34 0.38 16 44 H 0.05 0.84 6.23 -51.93 -0.32 0.52 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.04 0.53 6.60 -51.93 -0.34 0.18 16 47 H 0.38 10.24 6.49 -40.82 -0.26 9.97 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.07 1.11 6.08 -51.93 -0.32 0.80 16 50 H 0.10 2.04 5.84 -51.93 -0.30 1.73 16 LS Contribution 398.30 15.07 6.00 6.00 Total: -1.00 -33.35 398.30 -7.89 -41.24 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.10 Total: 7.53 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.42 Total: -4.71 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.36 Total: -58.53 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.29 Total: -8.96 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.35 -7.89 -41.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.235 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds