Wall clock time and date at job start Tue Mar 31 2020 20:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 N 1.30018 * 127.33232 * 90.02768 * 3 2 1 5 5 O 1.20656 * 112.29927 * 179.97438 * 4 3 2 6 6 C 1.33496 * 113.15912 * 0.02562 * 5 4 3 7 7 C 1.50698 * 126.83039 * 180.02562 * 6 5 4 8 8 C 1.37360 * 106.33632 * 359.74051 * 6 5 4 9 9 C 1.47405 * 128.56170 * 180.23859 * 8 6 5 10 10 O 1.21601 * 120.00053 * 270.16245 * 9 8 6 11 11 N 1.34778 * 119.99781 * 90.16103 * 9 8 6 12 12 C 1.46924 * 120.63332 * 0.02562 * 11 9 8 13 13 C 1.53192 * 108.77398 * 233.58242 * 12 11 9 14 14 C 1.53033 * 109.31250 * 305.36506 * 13 12 11 15 15 C 1.53036 * 109.54140 * 61.36569 * 14 13 12 16 16 H 1.09003 * 109.49579 * 58.61676 * 15 14 13 17 17 C 1.52997 * 109.50004 * 178.68055 * 15 14 13 18 18 H 1.09000 * 109.47580 * 305.00102 * 17 15 14 19 19 C 1.53008 * 109.46978 * 65.00165 * 17 15 14 20 20 N 1.46505 * 109.47326 * 184.99758 * 17 15 14 21 21 C 1.36939 * 119.99727 * 155.00066 * 20 17 15 22 22 H 1.07998 * 120.00345 * 0.02562 * 21 20 17 23 23 C 1.38810 * 119.99555 * 180.02562 * 21 20 17 24 24 N 1.31617 * 120.00393 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47156 * 89.99963 * 25 23 21 27 27 H 1.48501 * 109.47223 * 210.00074 * 25 23 21 28 28 H 1.48501 * 109.47153 * 329.99865 * 25 23 21 29 29 C 1.46928 * 120.62721 * 179.71671 * 11 9 8 30 30 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 31 31 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 33 33 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 34 34 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 35 35 H 1.08996 * 109.47222 * 359.96728 * 7 6 5 36 36 H 1.08995 * 109.47084 * 119.97138 * 7 6 5 37 37 H 1.08999 * 109.46743 * 239.97127 * 7 6 5 38 38 H 1.09000 * 109.58485 * 353.37389 * 12 11 9 39 39 H 1.09003 * 109.58976 * 113.79144 * 12 11 9 40 40 H 1.09001 * 109.49349 * 65.31781 * 13 12 11 41 41 H 1.09000 * 109.49249 * 185.41099 * 13 12 11 42 42 H 1.09001 * 109.46008 * 181.38795 * 14 13 12 43 43 H 1.09004 * 109.45841 * 301.35405 * 14 13 12 44 44 H 1.09000 * 109.47016 * 59.99592 * 19 17 15 45 45 H 1.09002 * 109.46957 * 180.02562 * 19 17 15 46 46 H 1.08997 * 109.46926 * 299.99690 * 19 17 15 47 47 H 0.96999 * 119.99714 * 335.01003 * 20 17 15 48 48 H 0.96997 * 120.00426 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.59043 * 246.20121 * 29 11 9 50 50 H 1.08998 * 109.58618 * 6.63499 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2956 2.1640 1.0338 5 8 2.6844 3.2625 0.7209 6 6 2.7466 3.4407 -0.6007 7 6 3.1879 4.6866 -1.3245 8 6 2.3345 2.2602 -1.1695 9 6 2.2207 1.9196 -2.5991 10 8 1.1811 2.1307 -3.1936 11 7 3.2690 1.3744 -3.2475 12 6 4.5314 1.1130 -2.5428 13 6 5.6746 1.7778 -3.3161 14 6 5.6529 1.2931 -4.7674 15 6 4.3292 1.6952 -5.4217 16 1 4.2163 2.7785 -5.3785 17 6 4.3219 1.2390 -6.8821 18 1 5.1979 1.6395 -7.3923 19 6 4.3532 -0.2897 -6.9390 20 7 3.1076 1.7273 -7.5403 21 6 3.0901 1.9084 -8.8976 22 1 3.9713 1.6908 -9.4828 23 6 1.9397 2.3716 -9.5211 24 7 0.8660 2.6373 -8.8079 25 14 1.9160 2.6192 -11.3725 26 1 1.4713 1.3662 -12.0339 27 1 0.9775 3.7186 -11.7129 28 1 3.2803 2.9698 -11.8425 29 6 3.1687 1.0238 -4.6708 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.4593 5.4522 -0.5977 36 1 4.0506 4.4572 -1.9499 37 1 2.3728 5.0517 -1.9494 38 1 4.4809 1.5285 -1.5363 39 1 4.7038 0.0381 -2.4882 40 1 5.5487 2.8603 -3.2921 41 1 6.6270 1.5115 -2.8577 42 1 6.4803 1.7457 -5.3139 43 1 5.7537 0.2079 -4.7894 44 1 3.4772 -0.6903 -6.4288 45 1 4.3485 -0.6147 -7.9794 46 1 5.2567 -0.6531 -6.4493 47 1 2.3161 1.9226 -7.0147 48 1 0.0620 2.9606 -9.2437 49 1 3.2325 -0.0582 -4.7860 50 1 2.2189 1.3805 -5.0689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753801215.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:10 Heat of formation + Delta-G solvation = 2.349582 kcal Electronic energy + Delta-G solvation = -30548.538971 eV Core-core repulsion = 26578.020217 eV Total energy + Delta-G solvation = -3970.518754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.97618 -41.33745 -39.19064 -36.95856 -36.38028 -34.88573 -34.39265 -33.22047 -32.40668 -31.45713 -29.58752 -28.93537 -27.11149 -26.27563 -25.59057 -24.71190 -24.33334 -22.37503 -21.29868 -20.68275 -19.85878 -19.28215 -18.93884 -18.53933 -17.61131 -17.09551 -16.70036 -16.22110 -15.97977 -15.55608 -15.45849 -15.38399 -15.25104 -15.07384 -14.54601 -14.33305 -14.18185 -14.12113 -13.92481 -13.90528 -13.78684 -13.52578 -13.34047 -12.96579 -12.83552 -12.67259 -12.64378 -12.54207 -12.33976 -12.10470 -11.93436 -11.88497 -11.78886 -11.75990 -11.45749 -11.25039 -11.18163 -10.97151 -10.90879 -10.39288 -9.69330 -8.98312 -7.90528 -5.19480 0.22897 0.78993 1.25763 1.46420 1.48361 1.56634 1.66580 2.08458 2.57651 2.94557 3.19248 3.42555 3.47947 3.74256 3.85103 3.88693 3.94712 4.06116 4.07767 4.16967 4.20185 4.26661 4.27720 4.34578 4.39986 4.49510 4.56311 4.64455 4.64714 4.73054 4.79786 4.82043 4.85996 4.87737 4.91518 4.97668 5.02142 5.11840 5.12955 5.15947 5.18280 5.27296 5.37647 5.44408 5.50323 5.57318 5.70799 6.26374 6.30794 6.97630 7.12781 7.36113 8.15197 8.35761 9.32851 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014726 B = 0.003115 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.892326 B = 8987.663672 C = 9435.751130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.057 3.943 4 N -0.368 5.368 5 O 0.096 5.904 6 C 0.032 3.968 7 C -0.082 4.082 8 C -0.265 4.265 9 C 0.595 3.405 10 O -0.575 6.575 11 N -0.591 5.591 12 C 0.104 3.896 13 C -0.126 4.126 14 C -0.108 4.108 15 C -0.090 4.090 16 H 0.050 0.950 17 C 0.172 3.828 18 H 0.049 0.951 19 C -0.159 4.159 20 N -0.741 5.741 21 C -0.234 4.234 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.973 5.973 25 Si 0.970 3.030 26 H -0.289 1.289 27 H -0.300 1.300 28 H -0.266 1.266 29 C 0.124 3.876 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.032 0.968 46 H 0.081 0.919 47 H 0.370 0.630 48 H 0.248 0.752 49 H 0.085 0.915 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.630 -3.624 21.607 25.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.105 4.105 4 N -0.075 5.075 5 O 0.036 5.964 6 C -0.032 4.032 7 C -0.139 4.139 8 C -0.272 4.272 9 C 0.382 3.618 10 O -0.455 6.455 11 N -0.322 5.322 12 C -0.017 4.017 13 C -0.164 4.164 14 C -0.146 4.146 15 C -0.110 4.110 16 H 0.069 0.931 17 C 0.064 3.936 18 H 0.067 0.933 19 C -0.218 4.218 20 N -0.381 5.381 21 C -0.366 4.366 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.799 3.201 26 H -0.216 1.216 27 H -0.227 1.227 28 H -0.191 1.191 29 C 0.001 3.999 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.138 0.862 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.100 0.900 47 H 0.202 0.798 48 H 0.057 0.943 49 H 0.103 0.897 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.141 -3.664 22.434 25.770 hybrid contribution -1.304 0.351 -2.036 2.443 sum 10.837 -3.313 20.398 23.334 Atomic orbital electron populations 1.21706 0.93654 1.03550 1.01403 1.20109 0.96693 0.86546 1.05100 1.25048 0.99988 0.99485 0.85971 1.73578 1.17460 0.92917 1.23507 1.84521 1.62695 1.26467 1.22688 1.25050 0.97086 0.97704 0.83316 1.20677 1.03139 0.90232 0.99853 1.21722 1.14437 0.96840 0.94239 1.17262 0.83091 0.76793 0.84662 1.90866 1.30742 1.55117 1.68745 1.48152 1.13359 1.60013 1.10641 1.22032 0.81706 1.02133 0.95848 1.21918 0.98803 1.00624 0.95043 1.21599 0.94993 1.02453 0.95512 1.21687 0.95948 0.99123 0.94208 0.93137 1.20481 0.89028 0.93208 0.90909 0.93311 1.22417 1.01268 0.97516 1.00625 1.42774 1.12047 1.78857 1.04444 1.19645 0.97186 1.34562 0.85228 0.90403 1.25554 0.96122 1.03415 1.02060 1.69858 1.03139 1.53536 1.35839 0.85187 0.77431 0.76788 0.80665 1.21620 1.22666 1.19111 1.21754 0.99240 1.00031 0.78838 0.94581 0.89266 0.92368 0.89261 0.87365 0.86150 0.87463 0.89463 0.89535 0.89130 0.91858 0.87242 0.90417 0.89838 0.93854 0.94874 0.90022 0.79841 0.94341 0.89705 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.89 71.98 0.71 -2.19 16 2 C -0.05 -0.89 6.55 29.85 0.20 -0.69 16 3 C 0.06 1.36 6.84 45.15 0.31 1.67 16 4 N -0.37 -8.79 12.01 -44.78 -0.54 -9.33 16 5 O 0.10 2.11 11.06 76.96 0.85 2.96 16 6 C 0.03 0.68 7.45 25.48 0.19 0.87 16 7 C -0.08 -1.22 10.33 71.24 0.74 -0.49 16 8 C -0.26 -6.85 4.22 -18.74 -0.08 -6.93 16 9 C 0.59 19.10 7.52 86.66 0.65 19.75 16 10 O -0.58 -25.04 16.52 -4.03 -0.07 -25.11 16 11 N -0.59 -15.84 2.97 -821.89 -2.44 -18.28 16 12 C 0.10 1.77 6.34 86.36 0.55 2.32 16 13 C -0.13 -1.83 6.08 30.67 0.19 -1.64 16 14 C -0.11 -2.07 4.89 30.62 0.15 -1.92 16 15 C -0.09 -2.70 2.28 -10.56 -0.02 -2.72 16 16 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 17 C 0.17 6.39 2.67 44.99 0.12 6.51 16 18 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 19 C -0.16 -5.13 8.76 71.98 0.63 -4.50 16 20 N -0.74 -37.59 5.06 -322.92 -1.63 -39.22 16 21 C -0.23 -13.10 9.93 84.03 0.83 -12.26 16 22 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 24 N -0.97 -62.16 13.06 21.65 0.28 -61.88 16 25 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 27 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 C 0.12 3.99 5.18 86.52 0.45 4.44 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.09 1.36 6.26 -2.39 -0.01 1.34 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.38 6.63 -2.38 -0.02 1.37 16 44 H 0.04 1.44 6.23 -2.39 -0.01 1.43 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.08 1.94 6.60 -2.39 -0.02 1.92 16 47 H 0.37 20.88 6.49 -92.71 -0.60 20.28 16 48 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 49 H 0.08 2.52 6.08 -2.39 -0.01 2.51 16 50 H 0.05 2.21 5.84 -2.39 -0.01 2.20 16 Total: -1.00 -77.66 398.30 4.90 -72.76 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.34 Total: 30.94 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 6.07 Total: -2.01 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -4.33 Total: -128.70 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.78 Total: -22.15 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.66 4.90 -72.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753801215.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.110 kcal (2) G-P(sol) polarization free energy of solvation -77.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds