Wall clock time and date at job start Tue Mar 31 2020 20:02:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.50697 * 109.47252 * 2 1
4 4 N 1.30015 * 127.33530 * 90.02492 * 3 2 1
5 5 O 1.20656 * 112.29857 * 179.97438 * 4 3 2
6 6 C 1.33495 * 113.15930 * 359.97438 * 5 4 3
7 7 C 1.50703 * 126.83067 * 180.02562 * 6 5 4
8 8 C 1.37363 * 106.34341 * 0.26432 * 6 5 4
9 9 C 1.47394 * 128.56670 * 179.70164 * 8 6 5
10 10 O 1.21608 * 120.00033 * 90.02536 * 9 8 6
11 11 N 1.34774 * 119.99721 * 270.01903 * 9 8 6
12 12 C 1.46921 * 120.63439 * 0.02562 * 11 9 8
13 13 C 1.53190 * 108.77699 * 126.36286 * 12 11 9
14 14 C 1.53038 * 109.31064 * 54.63958 * 13 12 11
15 15 C 1.53038 * 109.53664 * 298.62847 * 14 13 12
16 16 H 1.08997 * 109.50040 * 301.38488 * 15 14 13
17 17 C 1.53000 * 109.49940 * 181.31713 * 15 14 13
18 18 H 1.08994 * 109.47409 * 300.00711 * 17 15 14
19 19 C 1.53005 * 109.47029 * 60.00382 * 17 15 14
20 20 N 1.46503 * 109.47370 * 180.02562 * 17 15 14
21 21 C 1.36932 * 120.00022 * 155.00528 * 20 17 15
22 22 H 1.07995 * 120.00344 * 359.97438 * 21 20 17
23 23 C 1.38820 * 119.99656 * 179.97438 * 21 20 17
24 24 N 1.31615 * 120.00042 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 119.99771 * 179.97438 * 23 21 20
26 26 H 1.48501 * 109.46778 * 90.00079 * 25 23 21
27 27 H 1.48491 * 109.47252 * 210.00154 * 25 23 21
28 28 H 1.48500 * 109.47075 * 330.00324 * 25 23 21
29 29 C 1.46930 * 120.62973 * 179.71954 * 11 9 8
30 30 H 1.08995 * 109.47434 * 300.00516 * 1 2 3
31 31 H 1.09007 * 109.46955 * 60.00460 * 1 2 3
32 32 H 1.09004 * 109.47540 * 180.02562 * 1 2 3
33 33 H 1.09003 * 109.47144 * 239.99338 * 2 1 3
34 34 H 1.09004 * 109.46870 * 120.00062 * 2 1 3
35 35 H 1.09002 * 109.47152 * 0.02562 * 7 6 5
36 36 H 1.09001 * 109.46980 * 240.02626 * 7 6 5
37 37 H 1.09004 * 109.47113 * 120.02607 * 7 6 5
38 38 H 1.08996 * 109.58874 * 246.15169 * 12 11 9
39 39 H 1.09002 * 109.58744 * 6.43620 * 12 11 9
40 40 H 1.09007 * 109.50089 * 174.58787 * 13 12 11
41 41 H 1.08997 * 109.49861 * 294.68414 * 13 12 11
42 42 H 1.08996 * 109.46686 * 58.65192 * 14 13 12
43 43 H 1.09005 * 109.46121 * 178.61148 * 14 13 12
44 44 H 1.09001 * 109.46859 * 60.00305 * 19 17 15
45 45 H 1.08995 * 109.47109 * 180.02562 * 19 17 15
46 46 H 1.09000 * 109.47268 * 300.00367 * 19 17 15
47 47 H 0.97003 * 119.99438 * 334.99477 * 20 17 15
48 48 H 0.97001 * 119.99557 * 179.97438 * 24 23 21
49 49 H 1.09004 * 109.58617 * 353.42393 * 29 11 9
50 50 H 1.08999 * 109.58161 * 113.84440 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2956 2.1640 1.0338
5 8 2.6844 3.2625 0.7207
6 6 2.7476 3.4402 -0.6008
7 6 3.1892 4.6860 -1.3247
8 6 2.3250 2.2635 -1.1697
9 6 2.1975 1.9278 -2.5992
10 8 3.1367 1.4351 -3.1942
11 7 1.0399 2.1666 -3.2469
12 6 -0.1034 2.7617 -2.5417
13 6 -0.5696 3.9994 -3.3147
14 6 -0.8597 3.6101 -4.7660
15 6 0.4202 3.0856 -5.4208
16 1 1.1921 3.8538 -5.3777
17 6 0.1370 2.7275 -6.8811
18 1 -0.6342 1.9584 -6.9237
19 6 -0.3437 3.9735 -7.6278
20 7 1.3624 2.2248 -7.5072
21 6 1.2853 1.3871 -8.5877
22 1 0.3212 1.0967 -8.9781
23 6 2.4465 0.9113 -9.1812
24 7 3.6215 1.2657 -8.7057
25 14 2.3413 -0.2320 -10.6547
26 1 2.3276 0.5707 -11.9040
27 1 3.5168 -1.1392 -10.6622
28 1 1.0959 -1.0362 -10.5694
29 6 0.8996 1.8430 -4.6732
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8901
32 1 -0.3634 -1.0277 0.0005
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5139 0.8900
35 1 3.4608 5.4516 -0.5979
36 1 2.3743 5.0512 -1.9497
37 1 4.0520 4.4564 -1.9501
38 1 -0.9162 2.0375 -2.4870
39 1 0.1979 3.0494 -1.5345
40 1 -1.4759 4.3949 -2.8560
41 1 0.2119 4.7589 -3.2909
42 1 -1.6236 2.8330 -4.7879
43 1 -1.2152 4.4839 -5.3123
44 1 0.4276 4.7426 -7.5853
45 1 -0.5458 3.7183 -8.6680
46 1 -1.2555 4.3472 -7.1619
47 1 2.2283 2.4856 -7.1564
48 1 4.4328 0.9329 -9.1203
49 1 1.8632 1.5271 -5.0728
50 1 0.1704 1.0422 -4.7961
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753801217.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:02:16
Heat of formation + Delta-G solvation = 20.763256 kcal
Electronic energy + Delta-G solvation = -30643.053515 eV
Core-core repulsion = 26673.333238 eV
Total energy + Delta-G solvation = -3969.720277 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-45.02221 -40.09847 -37.81440 -35.59097 -35.36424 -33.80634 -32.89400 -31.80427
-31.53582 -29.98041 -28.50491 -27.97170 -25.82859 -24.98337 -24.20001 -23.28600
-22.88665 -21.15716 -20.22690 -19.63782 -19.08749 -17.98536 -17.63640 -17.04361
-16.49998 -15.92930 -15.20611 -14.89231 -14.74346 -14.49436 -14.37629 -14.08719
-13.77059 -13.63314 -13.57447 -13.50141 -13.14662 -12.94759 -12.89291 -12.74434
-12.65147 -12.35909 -12.04268 -11.85080 -11.69692 -11.38393 -11.17887 -11.08918
-10.98053 -10.86500 -10.72598 -10.62777 -10.29213 -10.21376 -10.13662 -9.97275
-9.77225 -9.55727 -9.40829 -8.88804 -8.52061 -6.92008 -5.71193 -3.00590
1.16322 1.76333 2.46912 2.67857 3.13086 3.46119 3.51065 3.53335
3.85371 4.08445 4.47827 4.60144 4.71818 4.73659 4.85541 4.90957
4.96362 4.99690 5.04522 5.13298 5.16215 5.21621 5.31965 5.33622
5.42875 5.59651 5.60280 5.60968 5.65129 5.69738 5.76346 5.79261
5.79379 5.89540 5.93590 5.98203 6.08218 6.17075 6.20197 6.41152
6.45326 6.48568 6.68658 6.71294 6.90582 7.09179 7.43836 7.73885
8.06529 8.19855 8.46296 9.57630 10.14952 10.49257 11.50958
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.013915 B = 0.003283 C = 0.003083
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2011.723552 B = 8527.819326 C = 9080.428325
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.049 4.049
3 C 0.057 3.943
4 N -0.357 5.357
5 O 0.094 5.906
6 C 0.013 3.987
7 C -0.080 4.080
8 C -0.239 4.239
9 C 0.593 3.407
10 O -0.513 6.513
11 N -0.598 5.598
12 C 0.109 3.891
13 C -0.133 4.133
14 C -0.115 4.115
15 C -0.102 4.102
16 H 0.070 0.930
17 C 0.180 3.820
18 H 0.047 0.953
19 C -0.164 4.164
20 N -0.724 5.724
21 C -0.240 4.240
22 H 0.069 0.931
23 C -0.011 4.011
24 N -0.929 5.929
25 Si 0.903 3.097
26 H -0.291 1.291
27 H -0.292 1.292
28 H -0.282 1.282
29 C 0.122 3.878
30 H 0.058 0.942
31 H 0.060 0.940
32 H 0.068 0.932
33 H 0.090 0.910
34 H 0.086 0.914
35 H 0.089 0.911
36 H 0.094 0.906
37 H 0.098 0.902
38 H 0.069 0.931
39 H 0.075 0.925
40 H 0.072 0.928
41 H 0.065 0.935
42 H 0.063 0.937
43 H 0.071 0.929
44 H 0.045 0.955
45 H 0.052 0.948
46 H 0.038 0.962
47 H 0.384 0.616
48 H 0.255 0.745
49 H 0.109 0.891
50 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.151 6.624 19.343 22.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.087 4.087
3 C -0.105 4.105
4 N -0.063 5.063
5 O 0.032 5.968
6 C -0.050 4.050
7 C -0.137 4.137
8 C -0.246 4.246
9 C 0.378 3.622
10 O -0.388 6.388
11 N -0.331 5.331
12 C -0.015 4.015
13 C -0.171 4.171
14 C -0.153 4.153
15 C -0.123 4.123
16 H 0.088 0.912
17 C 0.070 3.930
18 H 0.065 0.935
19 C -0.224 4.224
20 N -0.366 5.366
21 C -0.371 4.371
22 H 0.087 0.913
23 C -0.207 4.207
24 N -0.577 5.577
25 Si 0.735 3.265
26 H -0.219 1.219
27 H -0.218 1.218
28 H -0.208 1.208
29 C 0.001 3.999
30 H 0.077 0.923
31 H 0.079 0.921
32 H 0.087 0.913
33 H 0.108 0.892
34 H 0.105 0.895
35 H 0.107 0.893
36 H 0.113 0.887
37 H 0.117 0.883
38 H 0.087 0.913
39 H 0.093 0.907
40 H 0.091 0.909
41 H 0.084 0.916
42 H 0.082 0.918
43 H 0.089 0.911
44 H 0.064 0.936
45 H 0.071 0.929
46 H 0.057 0.943
47 H 0.218 0.782
48 H 0.065 0.935
49 H 0.127 0.873
50 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -8.727 6.044 20.193 22.813
hybrid contribution 0.269 -0.561 -1.516 1.639
sum -8.458 5.482 18.677 21.223
Atomic orbital electron populations
1.21747 0.93515 1.02730 1.02436 1.20012 0.96708 0.87597 1.04403
1.24739 1.00522 0.98709 0.86508 1.73586 1.16731 0.92576 1.23360
1.84524 1.62923 1.26672 1.22644 1.24603 0.99175 0.97654 0.83610
1.20491 1.03306 0.90596 0.99305 1.21951 1.12028 0.95086 0.95538
1.16934 0.82715 0.78709 0.83811 1.90908 1.38017 1.42698 1.67183
1.48101 1.11924 1.61573 1.11510 1.21714 0.88743 0.95381 0.95625
1.21925 1.01340 0.97147 0.96685 1.21634 0.97851 1.01438 0.94365
1.21680 0.97080 0.97285 0.96218 0.91159 1.20167 0.90701 0.93814
0.88322 0.93504 1.22481 0.99093 0.99694 1.01182 1.42446 1.02469
1.56283 1.35353 1.19186 0.92444 1.20145 1.05354 0.91295 1.24725
0.95325 1.01003 0.99658 1.69662 0.96563 1.48652 1.42779 0.86252
0.76819 0.80535 0.82939 1.21852 1.21834 1.20824 1.21681 1.04569
0.96755 0.76852 0.92337 0.92112 0.91292 0.89159 0.89548 0.89256
0.88720 0.88338 0.91291 0.90683 0.90934 0.91614 0.91797 0.91073
0.93615 0.92878 0.94301 0.78194 0.93523 0.87297 0.91488
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.25 9.89 37.16 0.37 -0.88 16
2 C -0.05 -0.51 6.54 -27.89 -0.18 -0.69 16
3 C 0.06 0.72 6.84 -79.76 -0.55 0.18 16
4 N -0.36 -4.57 12.01 34.78 0.42 -4.15 16
5 O 0.09 1.11 11.06 18.65 0.21 1.32 16
6 C 0.01 0.14 7.45 -34.63 -0.26 -0.11 16
7 C -0.08 -0.64 10.33 36.01 0.37 -0.27 16
8 C -0.24 -3.17 4.22 -102.89 -0.43 -3.61 16
9 C 0.59 9.42 7.52 -12.53 -0.09 9.33 16
10 O -0.51 -10.66 16.52 5.27 0.09 -10.57 16
11 N -0.60 -8.30 2.98 -174.33 -0.52 -8.82 16
12 C 0.11 1.11 5.99 -3.71 -0.02 1.08 16
13 C -0.13 -1.23 6.08 -26.61 -0.16 -1.39 16
14 C -0.11 -1.30 4.85 -26.69 -0.13 -1.43 16
15 C -0.10 -1.56 1.96 -90.74 -0.18 -1.73 16
16 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
17 C 0.18 3.35 2.48 -67.93 -0.17 3.18 16
18 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16
19 C -0.16 -2.80 9.14 37.16 0.34 -2.46 16
20 N -0.72 -17.56 4.52 -53.42 -0.24 -17.80 16
21 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16
22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16
23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16
24 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16
25 Si 0.90 22.48 29.55 -169.99 -5.02 17.46 16
26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
27 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16
28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
29 C 0.12 2.02 5.44 -3.95 -0.02 1.99 16
30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.06 0.54 7.37 -51.92 -0.38 0.16 16
32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16
34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16
38 H 0.07 0.64 7.73 -51.93 -0.40 0.24 16
39 H 0.07 0.72 6.25 -51.93 -0.32 0.40 16
40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
43 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16
44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16
45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
46 H 0.04 0.53 6.40 -51.93 -0.33 0.20 16
47 H 0.38 10.16 7.61 -40.82 -0.31 9.85 16
48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16
49 H 0.11 2.30 6.50 -51.93 -0.34 1.96 16
50 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16
LS Contribution 401.61 15.07 6.05 6.05
Total: -1.00 -33.11 401.61 -7.96 -41.07
By element:
Atomic # 1 Polarization: 15.22 SS G_CDS: -8.30 Total: 6.92 kcal
Atomic # 6 Polarization: -2.54 SS G_CDS: -1.36 Total: -3.91 kcal
Atomic # 7 Polarization: -58.72 SS G_CDS: 0.38 Total: -58.34 kcal
Atomic # 8 Polarization: -9.55 SS G_CDS: 0.29 Total: -9.25 kcal
Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -33.11 -7.96 -41.07 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753801217.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.836 kcal
(2) G-P(sol) polarization free energy of solvation -33.111 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.726 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.073 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds