Wall clock time and date at job start Tue Mar 31 2020 19:14:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.47099 * 119.99918 * 2 1
4 4 O 1.21607 * 120.00028 * 149.73678 * 3 2 1
5 5 N 1.34774 * 120.00190 * 329.74234 * 3 2 1
6 6 C 1.46498 * 120.00239 * 184.25008 * 5 3 2
7 7 C 1.46500 * 120.00140 * 4.24705 * 5 3 2
8 8 C 1.53518 * 114.17193 * 114.18709 * 7 5 3
9 9 N 1.47483 * 87.92931 * 87.81472 * 8 7 5
10 10 C 1.46901 * 110.99850 * 138.70667 * 9 8 7
11 11 C 1.50698 * 109.47279 * 169.99926 * 10 9 8
12 12 O 1.21295 * 119.99760 * 359.97438 * 11 10 9
13 13 N 1.34771 * 120.00036 * 180.02562 * 11 10 9
14 14 C 1.37097 * 120.00252 * 180.02562 * 13 11 10
15 15 H 1.08000 * 119.99435 * 359.97438 * 14 13 11
16 16 C 1.38947 * 120.00399 * 180.02562 * 14 13 11
17 17 N 1.31408 * 119.99972 * 359.97438 * 16 14 13
18 18 Si 1.86799 * 120.00167 * 180.02562 * 16 14 13
19 19 H 1.48495 * 109.47349 * 89.99527 * 18 16 14
20 20 H 1.48503 * 109.47196 * 209.99794 * 18 16 14
21 21 H 1.48500 * 109.46978 * 329.99779 * 18 16 14
22 22 C 1.47474 * 87.83687 * 27.01066 * 9 8 7
23 23 C 1.32991 * 119.99798 * 180.02562 * 2 1 3
24 24 C 1.51453 * 126.33889 * 179.68434 * 23 2 1
25 25 C 1.54271 * 106.84911 * 180.24345 * 24 23 2
26 26 C 1.54983 * 103.66499 * 23.48505 * 25 24 23
27 27 C 1.51842 * 126.34418 * 0.02562 * 23 2 1
28 28 H 1.09005 * 109.47225 * 96.72046 * 1 2 3
29 29 H 1.08998 * 109.47272 * 216.71916 * 1 2 3
30 30 H 1.08999 * 109.47115 * 336.72097 * 1 2 3
31 31 H 1.09002 * 109.47398 * 274.90697 * 6 5 3
32 32 H 1.09001 * 109.46867 * 34.90522 * 6 5 3
33 33 H 1.09004 * 109.47272 * 154.90184 * 6 5 3
34 34 H 1.09002 * 113.25764 * 341.23739 * 7 5 3
35 35 H 1.08997 * 113.47277 * 333.05191 * 8 7 5
36 36 H 1.08997 * 113.47366 * 202.58248 * 8 7 5
37 37 H 1.08999 * 109.47035 * 49.99298 * 10 9 8
38 38 H 1.08999 * 109.46905 * 290.00155 * 10 9 8
39 39 H 0.97008 * 119.99997 * 359.97438 * 13 11 10
40 40 H 0.96994 * 120.00317 * 180.02562 * 17 16 14
41 41 H 1.09006 * 113.47711 * 87.75863 * 22 9 8
42 42 H 1.09003 * 113.48102 * 218.21859 * 22 9 8
43 43 H 1.08996 * 109.98630 * 299.73451 * 24 23 2
44 44 H 1.09006 * 109.98070 * 61.03383 * 24 23 2
45 45 H 1.08999 * 110.79668 * 264.86214 * 25 24 23
46 46 H 1.09005 * 110.42793 * 141.93522 * 25 24 23
47 47 H 1.08996 * 110.83543 * 204.48921 * 26 25 24
48 48 H 1.09002 * 110.82837 * 80.90740 * 26 25 24
49 49 H 1.08998 * 110.44458 * 274.92706 * 27 23 2
50 50 H 1.09004 * 110.43931 * 37.32679 * 27 23 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2425 1.2739 0.0000
4 8 3.3343 1.3457 0.5308
5 7 1.7064 2.3616 -0.5881
6 6 2.4770 3.6048 -0.6702
7 6 0.3529 2.3008 -1.1454
8 6 -0.6650 3.1947 -0.4233
9 7 -0.2635 4.2897 -1.3260
10 6 -1.4327 5.0571 -1.7754
11 6 -0.9725 6.3024 -2.4883
12 8 0.2129 6.5287 -2.6097
13 7 -1.8781 7.1652 -2.9902
14 6 -1.4595 8.2979 -3.6392
15 1 -0.4040 8.4990 -3.7480
16 6 -2.3932 9.1877 -4.1562
17 7 -3.6775 8.9433 -4.0234
18 14 -1.8228 10.7307 -5.0412
19 1 -1.6652 10.4412 -6.4891
20 1 -2.8294 11.8071 -4.8582
21 1 -0.5202 11.1704 -4.4797
22 6 0.1070 3.2621 -2.3167
23 6 2.1720 -1.1518 -0.0005
24 6 3.6772 -1.3190 -0.0073
25 6 3.9585 -2.8359 -0.0114
26 6 2.6647 -3.4466 -0.6072
27 6 1.5627 -2.5426 -0.0017
28 1 -0.3634 -0.1203 -1.0206
29 1 -0.3634 -0.8237 0.6144
30 1 -0.3633 0.9440 0.4061
31 1 2.3510 4.1721 0.2520
32 1 3.5321 3.3696 -0.8107
33 1 2.1216 4.1977 -1.5130
34 1 0.0059 1.2829 -1.3231
35 1 -0.4159 3.3799 0.6216
36 1 -1.6980 2.8753 -0.5608
37 1 -2.0384 5.3349 -0.9128
38 1 -2.0276 4.4477 -2.4557
39 1 -2.8262 6.9844 -2.8928
40 1 -4.3293 9.5642 -4.3845
41 1 -0.7200 2.9606 -2.9597
42 1 1.0103 3.5043 -2.8767
43 1 4.0993 -0.8573 -0.8999
44 1 4.1065 -0.8650 0.8859
45 1 4.1232 -3.2017 1.0021
46 1 4.8160 -3.0621 -0.6454
47 1 2.5394 -4.4800 -0.2842
48 1 2.6684 -3.3770 -1.6950
49 1 1.3291 -2.8568 1.0156
50 1 0.6662 -2.5649 -0.6214
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001754573764.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:14:46
Heat of formation + Delta-G solvation = 0.806930 kcal
Electronic energy + Delta-G solvation = -29273.670376 eV
Core-core repulsion = 25303.084727 eV
Total energy + Delta-G solvation = -3970.585648 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.11379 -39.50420 -38.09794 -37.68000 -34.80071 -33.87443 -33.72366 -31.26510
-29.98843 -29.25953 -28.44580 -26.91109 -25.99124 -25.67543 -24.32960 -23.19024
-21.23516 -20.97059 -19.58700 -19.30239 -17.99809 -17.79618 -16.66470 -16.40963
-16.04758 -15.86829 -15.78828 -15.21335 -14.87504 -14.79356 -14.45437 -13.92332
-13.91285 -13.67742 -13.62867 -13.38059 -13.07081 -12.96451 -12.68026 -12.55194
-12.28677 -12.19150 -11.87636 -11.59823 -11.51918 -11.50770 -11.41213 -11.39583
-11.33334 -11.07549 -10.95962 -10.77851 -10.68127 -10.39544 -10.21607 -9.70182
-9.50125 -9.04930 -8.82831 -8.52804 -8.20669 -7.96210 -6.41875 -3.82518
1.25769 2.92482 3.06540 3.17478 3.26126 3.32261 3.88532 3.92785
4.05789 4.21761 4.32253 4.36060 4.50782 4.67143 4.71379 4.83062
4.90997 4.95662 5.08894 5.15959 5.20573 5.24597 5.25351 5.31911
5.35785 5.41545 5.46083 5.52739 5.55598 5.61951 5.65769 5.68238
5.71335 5.75342 5.78367 5.87718 5.91883 5.96679 5.97365 6.18521
6.24208 6.28308 6.39315 6.48457 6.57164 7.09917 7.46085 7.55071
8.06048 8.17600 8.61974 9.18530 9.54649 10.06917 10.75997
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.030810 B = 0.002037 C = 0.001981
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 908.576355 B =13743.561882 C =14131.783861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.184 4.184
3 C 0.558 3.442
4 O -0.541 6.541
5 N -0.580 5.580
6 C 0.089 3.911
7 C 0.083 3.917
8 C -0.022 4.022
9 N -0.435 5.435
10 C 0.007 3.993
11 C 0.447 3.553
12 O -0.575 6.575
13 N -0.567 5.567
14 C -0.297 4.297
15 H 0.102 0.898
16 C 0.021 3.979
17 N -0.903 5.903
18 Si 0.929 3.071
19 H -0.278 1.278
20 H -0.284 1.284
21 H -0.270 1.270
22 C -0.009 4.009
23 C -0.045 4.045
24 C -0.098 4.098
25 C -0.127 4.127
26 C -0.124 4.124
27 C -0.097 4.097
28 H 0.077 0.923
29 H 0.066 0.934
30 H 0.075 0.925
31 H 0.054 0.946
32 H 0.062 0.938
33 H 0.096 0.904
34 H 0.132 0.868
35 H 0.087 0.913
36 H 0.078 0.922
37 H 0.088 0.912
38 H 0.060 0.940
39 H 0.391 0.609
40 H 0.271 0.729
41 H 0.080 0.920
42 H 0.093 0.907
43 H 0.076 0.924
44 H 0.090 0.910
45 H 0.068 0.932
46 H 0.068 0.932
47 H 0.071 0.929
48 H 0.070 0.930
49 H 0.085 0.915
50 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.543 -25.061 7.234 26.477
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.187 4.187
3 C 0.348 3.652
4 O -0.420 6.420
5 N -0.310 5.310
6 C -0.053 4.053
7 C -0.022 4.022
8 C -0.152 4.152
9 N -0.157 5.157
10 C -0.125 4.125
11 C 0.232 3.768
12 O -0.458 6.458
13 N -0.204 5.204
14 C -0.427 4.427
15 H 0.120 0.880
16 C -0.180 4.180
17 N -0.545 5.545
18 Si 0.757 3.243
19 H -0.205 1.205
20 H -0.209 1.209
21 H -0.194 1.194
22 C -0.138 4.138
23 C -0.047 4.047
24 C -0.134 4.134
25 C -0.164 4.164
26 C -0.162 4.162
27 C -0.134 4.134
28 H 0.095 0.905
29 H 0.085 0.915
30 H 0.094 0.906
31 H 0.073 0.927
32 H 0.080 0.920
33 H 0.115 0.885
34 H 0.149 0.851
35 H 0.105 0.895
36 H 0.096 0.904
37 H 0.106 0.894
38 H 0.078 0.922
39 H 0.224 0.776
40 H 0.081 0.919
41 H 0.098 0.902
42 H 0.111 0.889
43 H 0.094 0.906
44 H 0.109 0.891
45 H 0.087 0.913
46 H 0.087 0.913
47 H 0.089 0.911
48 H 0.089 0.911
49 H 0.104 0.896
50 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 6.250 -24.156 7.575 26.076
hybrid contribution -1.345 0.489 -0.718 1.601
sum 4.905 -23.667 6.857 25.124
Atomic orbital electron populations
1.21150 0.90902 1.03385 1.01654 1.20715 0.96054 0.91943 1.10021
1.18313 0.85257 0.83540 0.78136 1.90760 1.21358 1.85056 1.44837
1.47323 1.14841 1.12114 1.56768 1.21730 0.95050 0.84749 1.03754
1.23070 0.83107 1.00940 0.95091 1.24426 0.98119 0.92478 1.00206
1.68882 1.27008 1.11961 1.07824 1.22520 0.93081 0.96728 1.00136
1.19657 0.87006 0.85588 0.84592 1.90519 1.16590 1.76757 1.61979
1.41874 1.08239 1.20262 1.50059 1.19686 0.94655 0.97475 1.30875
0.87977 1.25249 0.94886 0.99689 0.98192 1.69605 1.00246 1.38118
1.46507 0.85864 0.78447 0.80610 0.79417 1.20450 1.20941 1.19423
1.24302 1.02736 0.91334 0.95450 1.22607 0.96299 0.93487 0.92276
1.21284 0.92393 0.96029 1.03741 1.22428 0.97769 0.95048 1.01178
1.22520 0.94528 0.98660 1.00464 1.21536 0.98531 0.91505 1.01843
0.90525 0.91504 0.90589 0.92723 0.91957 0.88537 0.85148 0.89470
0.90382 0.89409 0.92172 0.77587 0.91924 0.90198 0.88860 0.90561
0.89131 0.91325 0.91314 0.91064 0.91139 0.89642 0.90467
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.83 7.39 36.01 0.27 -0.56 16
2 C -0.18 -1.90 5.65 -102.85 -0.58 -2.48 16
3 C 0.56 7.60 7.27 -12.67 -0.09 7.51 16
4 O -0.54 -9.00 14.59 5.27 0.08 -8.93 16
5 N -0.58 -7.64 3.10 -175.01 -0.54 -8.19 16
6 C 0.09 1.32 9.53 59.85 0.57 1.89 16
7 C 0.08 0.90 3.25 -67.71 -0.22 0.68 16
8 C -0.02 -0.25 6.36 -7.54 -0.05 -0.29 16
9 N -0.43 -6.70 4.56 -246.11 -1.12 -7.83 16
10 C 0.01 0.12 5.30 -4.98 -0.03 0.10 16
11 C 0.45 10.39 7.85 -10.99 -0.09 10.31 16
12 O -0.58 -15.53 16.01 5.54 0.09 -15.44 16
13 N -0.57 -14.23 5.29 -10.97 -0.06 -14.29 16
14 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16
15 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16
16 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16
17 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16
18 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16
19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16
21 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16
22 C -0.01 -0.11 6.70 -7.55 -0.05 -0.16 16
23 C -0.05 -0.42 6.10 -100.23 -0.61 -1.03 16
24 C -0.10 -0.95 5.14 -26.85 -0.14 -1.09 16
25 C -0.13 -0.89 6.88 -25.02 -0.17 -1.06 16
26 C -0.12 -0.74 6.94 -24.70 -0.17 -0.91 16
27 C -0.10 -0.63 5.74 -26.33 -0.15 -0.78 16
28 H 0.08 0.44 6.66 -51.93 -0.35 0.09 16
29 H 0.07 0.40 7.56 -51.93 -0.39 0.00 16
30 H 0.08 0.58 5.48 -51.93 -0.28 0.29 16
31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
32 H 0.06 0.92 7.64 -51.93 -0.40 0.52 16
33 H 0.10 1.57 5.47 -51.93 -0.28 1.29 16
34 H 0.13 1.08 3.55 -51.93 -0.18 0.90 16
35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16
36 H 0.08 0.69 7.91 -51.93 -0.41 0.28 16
37 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16
38 H 0.06 0.87 7.30 -51.93 -0.38 0.50 16
39 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16
40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
41 H 0.08 0.91 7.42 -51.93 -0.39 0.52 16
42 H 0.09 1.39 6.98 -51.93 -0.36 1.03 16
43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
44 H 0.09 1.04 7.34 -51.93 -0.38 0.66 16
45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16
47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
48 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16
49 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
50 H 0.08 0.42 7.79 -51.93 -0.40 0.01 16
LS Contribution 390.43 15.07 5.88 5.88
Total: -1.00 -33.46 390.43 -9.57 -43.03
By element:
Atomic # 1 Polarization: 17.10 SS G_CDS: -7.85 Total: 9.26 kcal
Atomic # 6 Polarization: 5.93 SS G_CDS: -1.75 Total: 4.18 kcal
Atomic # 7 Polarization: -53.04 SS G_CDS: -1.00 Total: -54.04 kcal
Atomic # 8 Polarization: -24.53 SS G_CDS: 0.17 Total: -24.37 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -33.46 -9.57 -43.03 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754573764.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.836 kcal
(2) G-P(sol) polarization free energy of solvation -33.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.378 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds