Wall clock time and date at job start Tue Mar 31 2020 19:14:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 C 1.47099 * 119.99918 * 2 1
4 4 O 1.21607 * 120.00028 * 149.73678 * 3 2 1
5 5 N 1.34774 * 120.00190 * 329.74234 * 3 2 1
6 6 C 1.46498 * 120.00239 * 184.25008 * 5 3 2
7 7 C 1.46500 * 120.00140 * 4.24705 * 5 3 2
8 8 C 1.53518 * 114.17193 * 114.18709 * 7 5 3
9 9 N 1.47483 * 87.92931 * 87.81472 * 8 7 5
10 10 C 1.46901 * 110.99850 * 138.70667 * 9 8 7
11 11 C 1.50698 * 109.47279 * 169.99926 * 10 9 8
12 12 O 1.21295 * 119.99760 * 359.97438 * 11 10 9
13 13 N 1.34771 * 120.00036 * 180.02562 * 11 10 9
14 14 C 1.37097 * 120.00252 * 180.02562 * 13 11 10
15 15 H 1.08000 * 119.99435 * 359.97438 * 14 13 11
16 16 C 1.38947 * 120.00399 * 180.02562 * 14 13 11
17 17 N 1.31408 * 119.99972 * 359.97438 * 16 14 13
18 18 Si 1.86799 * 120.00167 * 180.02562 * 16 14 13
19 19 H 1.48495 * 109.47349 * 89.99527 * 18 16 14
20 20 H 1.48503 * 109.47196 * 209.99794 * 18 16 14
21 21 H 1.48500 * 109.46978 * 329.99779 * 18 16 14
22 22 C 1.47474 * 87.83687 * 27.01066 * 9 8 7
23 23 C 1.32991 * 119.99798 * 180.02562 * 2 1 3
24 24 C 1.51453 * 126.33889 * 179.68434 * 23 2 1
25 25 C 1.54271 * 106.84911 * 180.24345 * 24 23 2
26 26 C 1.54983 * 103.66499 * 23.48505 * 25 24 23
27 27 C 1.51842 * 126.34418 * 0.02562 * 23 2 1
28 28 H 1.09005 * 109.47225 * 96.72046 * 1 2 3
29 29 H 1.08998 * 109.47272 * 216.71916 * 1 2 3
30 30 H 1.08999 * 109.47115 * 336.72097 * 1 2 3
31 31 H 1.09002 * 109.47398 * 274.90697 * 6 5 3
32 32 H 1.09001 * 109.46867 * 34.90522 * 6 5 3
33 33 H 1.09004 * 109.47272 * 154.90184 * 6 5 3
34 34 H 1.09002 * 113.25764 * 341.23739 * 7 5 3
35 35 H 1.08997 * 113.47277 * 333.05191 * 8 7 5
36 36 H 1.08997 * 113.47366 * 202.58248 * 8 7 5
37 37 H 1.08999 * 109.47035 * 49.99298 * 10 9 8
38 38 H 1.08999 * 109.46905 * 290.00155 * 10 9 8
39 39 H 0.97008 * 119.99997 * 359.97438 * 13 11 10
40 40 H 0.96994 * 120.00317 * 180.02562 * 17 16 14
41 41 H 1.09006 * 113.47711 * 87.75863 * 22 9 8
42 42 H 1.09003 * 113.48102 * 218.21859 * 22 9 8
43 43 H 1.08996 * 109.98630 * 299.73451 * 24 23 2
44 44 H 1.09006 * 109.98070 * 61.03383 * 24 23 2
45 45 H 1.08999 * 110.79668 * 264.86214 * 25 24 23
46 46 H 1.09005 * 110.42793 * 141.93522 * 25 24 23
47 47 H 1.08996 * 110.83543 * 204.48921 * 26 25 24
48 48 H 1.09002 * 110.82837 * 80.90740 * 26 25 24
49 49 H 1.08998 * 110.44458 * 274.92706 * 27 23 2
50 50 H 1.09004 * 110.43931 * 37.32679 * 27 23 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2425 1.2739 0.0000
4 8 3.3343 1.3457 0.5308
5 7 1.7064 2.3616 -0.5881
6 6 2.4770 3.6048 -0.6702
7 6 0.3529 2.3008 -1.1454
8 6 -0.6650 3.1947 -0.4233
9 7 -0.2635 4.2897 -1.3260
10 6 -1.4327 5.0571 -1.7754
11 6 -0.9725 6.3024 -2.4883
12 8 0.2129 6.5287 -2.6097
13 7 -1.8781 7.1652 -2.9902
14 6 -1.4595 8.2979 -3.6392
15 1 -0.4040 8.4990 -3.7480
16 6 -2.3932 9.1877 -4.1562
17 7 -3.6775 8.9433 -4.0234
18 14 -1.8228 10.7307 -5.0412
19 1 -1.6652 10.4412 -6.4891
20 1 -2.8294 11.8071 -4.8582
21 1 -0.5202 11.1704 -4.4797
22 6 0.1070 3.2621 -2.3167
23 6 2.1720 -1.1518 -0.0005
24 6 3.6772 -1.3190 -0.0073
25 6 3.9585 -2.8359 -0.0114
26 6 2.6647 -3.4466 -0.6072
27 6 1.5627 -2.5426 -0.0017
28 1 -0.3634 -0.1203 -1.0206
29 1 -0.3634 -0.8237 0.6144
30 1 -0.3633 0.9440 0.4061
31 1 2.3510 4.1721 0.2520
32 1 3.5321 3.3696 -0.8107
33 1 2.1216 4.1977 -1.5130
34 1 0.0059 1.2829 -1.3231
35 1 -0.4159 3.3799 0.6216
36 1 -1.6980 2.8753 -0.5608
37 1 -2.0384 5.3349 -0.9128
38 1 -2.0276 4.4477 -2.4557
39 1 -2.8262 6.9844 -2.8928
40 1 -4.3293 9.5642 -4.3845
41 1 -0.7200 2.9606 -2.9597
42 1 1.0103 3.5043 -2.8767
43 1 4.0993 -0.8573 -0.8999
44 1 4.1065 -0.8650 0.8859
45 1 4.1232 -3.2017 1.0021
46 1 4.8160 -3.0621 -0.6454
47 1 2.5394 -4.4800 -0.2842
48 1 2.6684 -3.3770 -1.6950
49 1 1.3291 -2.8568 1.0156
50 1 0.6662 -2.5649 -0.6214
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001754573764.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:14:45
Heat of formation + Delta-G solvation = -22.552047 kcal
Electronic energy + Delta-G solvation = -29274.683297 eV
Core-core repulsion = 25303.084727 eV
Total energy + Delta-G solvation = -3971.598570 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.13944 -40.57975 -39.57820 -38.72179 -36.07200 -35.72289 -34.47828 -33.26638
-31.26956 -29.86583 -29.27014 -27.83538 -27.38625 -26.86455 -25.60437 -24.26671
-22.18252 -21.59875 -21.06604 -20.44037 -19.90731 -18.76060 -17.84016 -17.58220
-17.22433 -16.89725 -16.70842 -16.42391 -16.32749 -16.08337 -15.68991 -15.50623
-14.93991 -14.81126 -14.55621 -14.28523 -14.19150 -13.94701 -13.72827 -13.56204
-13.44264 -13.36281 -13.06483 -12.97243 -12.76570 -12.66890 -12.51575 -12.41840
-12.23096 -12.13857 -11.96753 -11.91138 -11.87517 -11.54679 -11.48846 -11.47683
-10.71087 -10.35776 -9.99359 -9.89486 -9.66888 -9.48180 -8.46262 -5.94287
0.45297 1.36927 1.40529 1.52927 1.91942 2.08892 2.10052 2.28622
2.83968 3.20483 3.31658 3.41070 3.44780 3.71354 3.81180 3.84720
4.13195 4.16579 4.23432 4.28684 4.30361 4.37619 4.44194 4.49345
4.50211 4.56070 4.59433 4.63982 4.71600 4.75332 4.78951 4.81411
4.91924 4.93182 5.01822 5.03458 5.06435 5.13187 5.21881 5.23815
5.40149 5.41740 5.42289 5.44054 5.52938 5.70007 5.90912 6.10245
6.45947 6.62659 7.12507 7.14884 7.59347 8.16436 8.71109
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.030810 B = 0.002037 C = 0.001981
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 908.576355 B =13743.561882 C =14131.783861
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.198 4.198
3 C 0.549 3.451
4 O -0.584 6.584
5 N -0.583 5.583
6 C 0.100 3.900
7 C 0.094 3.906
8 C -0.011 4.011
9 N -0.476 5.476
10 C 0.022 3.978
11 C 0.441 3.559
12 O -0.620 6.620
13 N -0.577 5.577
14 C -0.331 4.331
15 H 0.075 0.925
16 C -0.013 4.013
17 N -0.920 5.920
18 Si 0.990 3.010
19 H -0.270 1.270
20 H -0.270 1.270
21 H -0.276 1.276
22 C -0.012 4.012
23 C -0.044 4.044
24 C -0.104 4.104
25 C -0.124 4.124
26 C -0.120 4.120
27 C -0.092 4.092
28 H 0.100 0.900
29 H 0.087 0.913
30 H 0.073 0.927
31 H 0.041 0.959
32 H 0.053 0.947
33 H 0.080 0.920
34 H 0.169 0.831
35 H 0.079 0.921
36 H 0.118 0.882
37 H 0.106 0.894
38 H 0.092 0.908
39 H 0.396 0.604
40 H 0.277 0.723
41 H 0.107 0.893
42 H 0.063 0.937
43 H 0.056 0.944
44 H 0.063 0.937
45 H 0.074 0.926
46 H 0.071 0.929
47 H 0.091 0.909
48 H 0.071 0.929
49 H 0.099 0.901
50 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.967 -27.810 7.183 28.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.201 4.201
3 C 0.341 3.659
4 O -0.466 6.466
5 N -0.313 5.313
6 C -0.043 4.043
7 C -0.009 4.009
8 C -0.140 4.140
9 N -0.198 5.198
10 C -0.109 4.109
11 C 0.229 3.771
12 O -0.506 6.506
13 N -0.215 5.215
14 C -0.461 4.461
15 H 0.093 0.907
16 C -0.213 4.213
17 N -0.561 5.561
18 Si 0.814 3.186
19 H -0.196 1.196
20 H -0.195 1.195
21 H -0.201 1.201
22 C -0.142 4.142
23 C -0.045 4.045
24 C -0.141 4.141
25 C -0.161 4.161
26 C -0.158 4.158
27 C -0.128 4.128
28 H 0.118 0.882
29 H 0.106 0.894
30 H 0.092 0.908
31 H 0.060 0.940
32 H 0.072 0.928
33 H 0.099 0.901
34 H 0.185 0.815
35 H 0.098 0.902
36 H 0.136 0.864
37 H 0.124 0.876
38 H 0.110 0.890
39 H 0.230 0.770
40 H 0.086 0.914
41 H 0.125 0.875
42 H 0.082 0.918
43 H 0.075 0.925
44 H 0.082 0.918
45 H 0.093 0.907
46 H 0.090 0.910
47 H 0.109 0.891
48 H 0.089 0.911
49 H 0.117 0.883
50 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 3.626 -26.928 7.525 28.193
hybrid contribution -0.424 1.326 -0.666 1.543
sum 3.202 -25.601 6.859 26.697
Atomic orbital electron populations
1.21211 0.88055 1.04203 1.03473 1.20794 0.97829 0.90048 1.11460
1.19035 0.84982 0.84659 0.77184 1.90735 1.23388 1.85791 1.46703
1.47434 1.15803 1.11287 1.56763 1.21435 0.94966 0.85599 1.02256
1.23285 0.81672 1.02426 0.93563 1.24497 1.00164 0.90458 0.98914
1.68845 1.27221 1.14061 1.09711 1.22396 0.93914 0.94020 1.00591
1.20903 0.86163 0.86801 0.83248 1.90491 1.18665 1.78105 1.63305
1.41945 1.08754 1.20219 1.50570 1.19603 0.93789 0.99585 1.33122
0.90733 1.25980 0.94949 1.02011 0.98333 1.69656 1.00772 1.39031
1.46615 0.84974 0.77865 0.77337 0.78438 1.19583 1.19482 1.20141
1.24397 1.02482 0.91347 0.95927 1.22938 0.95935 0.94994 0.90658
1.21298 0.93291 0.97930 1.01536 1.22424 0.98961 0.92840 1.01902
1.22542 0.93228 0.99537 1.00461 1.21615 0.99133 0.89000 1.03065
0.88178 0.89393 0.90832 0.94000 0.92828 0.90140 0.81478 0.90230
0.86408 0.87583 0.88992 0.76981 0.91351 0.87540 0.91813 0.92528
0.91802 0.90687 0.90993 0.89059 0.91051 0.88320 0.88376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.16 7.39 71.24 0.53 -0.63 16
2 C -0.20 -3.73 5.65 -18.70 -0.11 -3.84 16
3 C 0.55 15.16 7.27 86.57 0.63 15.79 16
4 O -0.58 -20.62 14.59 -4.05 -0.06 -20.68 16
5 N -0.58 -15.48 3.10 -825.87 -2.56 -18.04 16
6 C 0.10 3.20 9.53 127.77 1.22 4.42 16
7 C 0.09 1.85 3.25 45.45 0.15 2.00 16
8 C -0.01 -0.21 6.36 83.58 0.53 0.32 16
9 N -0.48 -14.15 4.56 -932.54 -4.25 -18.40 16
10 C 0.02 0.71 5.30 85.56 0.45 1.16 16
11 C 0.44 20.80 7.85 87.66 0.69 21.49 16
12 O -0.62 -34.79 16.01 -3.08 -0.05 -34.84 16
13 N -0.58 -29.37 5.29 -306.99 -1.62 -30.99 16
14 C -0.33 -18.92 9.68 84.04 0.81 -18.11 16
15 H 0.07 4.59 7.16 -2.91 -0.02 4.57 16
16 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16
17 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16
18 Si 0.99 43.30 29.55 68.60 2.03 45.33 16
19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16
22 C -0.01 -0.30 6.70 83.57 0.56 0.26 16
23 C -0.04 -0.74 6.10 -17.01 -0.10 -0.85 16
24 C -0.10 -2.06 5.14 30.52 0.16 -1.90 16
25 C -0.12 -1.58 6.88 31.70 0.22 -1.36 16
26 C -0.12 -1.06 6.94 31.91 0.22 -0.83 16
27 C -0.09 -0.84 5.74 30.85 0.18 -0.66 16
28 H 0.10 0.57 6.66 -2.38 -0.02 0.55 16
29 H 0.09 0.59 7.56 -2.39 -0.02 0.57 16
30 H 0.07 0.81 5.48 -2.39 -0.01 0.80 16
31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16
32 H 0.05 1.74 7.64 -2.39 -0.02 1.73 16
33 H 0.08 2.83 5.47 -2.39 -0.01 2.82 16
34 H 0.17 2.08 3.55 -2.39 -0.01 2.07 16
35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
36 H 0.12 1.45 7.91 -2.39 -0.02 1.43 16
37 H 0.11 2.99 8.08 -2.39 -0.02 2.97 16
38 H 0.09 2.35 7.30 -2.39 -0.02 2.33 16
39 H 0.40 18.93 7.90 -92.70 -0.73 18.20 16
40 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16
41 H 0.11 2.07 7.42 -2.38 -0.02 2.05 16
42 H 0.06 1.96 6.98 -2.39 -0.02 1.94 16
43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
44 H 0.06 1.59 7.34 -2.38 -0.02 1.57 16
45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
46 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16
47 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16
48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
49 H 0.10 0.72 8.14 -2.39 -0.02 0.71 16
50 H 0.10 0.56 7.79 -2.38 -0.02 0.54 16
Total: -1.00 -77.90 390.43 0.59 -77.30
By element:
Atomic # 1 Polarization: 32.16 SS G_CDS: 0.23 Total: 32.38 kcal
Atomic # 6 Polarization: 10.41 SS G_CDS: 6.60 Total: 17.01 kcal
Atomic # 7 Polarization: -108.35 SS G_CDS: -8.15 Total: -116.51 kcal
Atomic # 8 Polarization: -55.42 SS G_CDS: -0.11 Total: -55.53 kcal
Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal
Total: -77.90 0.59 -77.30 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754573764.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.751 kcal
(2) G-P(sol) polarization free energy of solvation -77.896 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.145 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.303 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.552 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds