Wall clock time and date at job start Tue Mar 31 2020 20:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46958 * 2 1 4 4 N 1.30014 * 127.33317 * 269.95496 * 3 2 1 5 5 O 1.20655 * 112.30168 * 180.02562 * 4 3 2 6 6 C 1.33488 * 113.15756 * 359.71791 * 5 4 3 7 7 C 1.50699 * 126.82985 * 180.33511 * 6 5 4 8 8 C 1.37356 * 106.34093 * 0.44975 * 6 5 4 9 9 C 1.47402 * 128.56808 * 179.85724 * 8 6 5 10 10 O 1.21610 * 119.99786 * 269.67906 * 9 8 6 11 11 N 1.34771 * 120.00220 * 89.95189 * 9 8 6 12 12 C 1.46499 * 120.00373 * 179.72668 * 11 9 8 13 13 C 1.53002 * 109.47375 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.49194 * 60.00381 * 13 12 11 15 15 C 1.53037 * 109.49544 * 180.02562 * 13 12 11 16 16 C 1.53042 * 109.53820 * 181.28731 * 15 13 12 17 17 C 1.53194 * 109.33717 * 298.68381 * 16 15 13 18 18 N 1.46933 * 108.77523 * 54.62037 * 17 16 15 19 19 C 1.36936 * 120.62936 * 126.41052 * 18 17 16 20 20 H 1.07997 * 120.00317 * 331.80055 * 19 18 17 21 21 C 1.38811 * 119.99473 * 151.80619 * 19 18 17 22 22 N 1.31616 * 120.00307 * 343.08204 * 21 19 18 23 23 Si 1.86801 * 119.99891 * 163.08745 * 21 19 18 24 24 H 1.48499 * 109.47201 * 59.99655 * 23 21 19 25 25 H 1.48495 * 109.47333 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47092 * 299.99748 * 23 21 19 27 27 C 1.46927 * 118.73557 * 306.38728 * 18 17 16 28 28 H 1.09001 * 109.47343 * 59.99896 * 1 2 3 29 29 H 1.08999 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47006 * 300.00235 * 1 2 3 31 31 H 1.09000 * 109.47006 * 239.99765 * 2 1 3 32 32 H 1.09001 * 109.46997 * 119.99406 * 2 1 3 33 33 H 1.08997 * 109.47150 * 270.13838 * 7 6 5 34 34 H 1.08999 * 109.47327 * 30.14025 * 7 6 5 35 35 H 1.09002 * 109.47011 * 150.14640 * 7 6 5 36 36 H 0.97006 * 119.99980 * 359.72507 * 11 9 8 37 37 H 1.08997 * 109.47399 * 300.00554 * 12 11 9 38 38 H 1.08999 * 109.46930 * 59.99926 * 12 11 9 39 39 H 1.08997 * 109.47399 * 60.00101 * 14 13 12 40 40 H 1.09004 * 109.46658 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47017 * 299.99683 * 14 13 12 42 42 H 1.08995 * 109.46535 * 301.33793 * 15 13 12 43 43 H 1.09004 * 109.45990 * 61.29733 * 15 13 12 44 44 H 1.08996 * 109.49653 * 178.72028 * 16 15 13 45 45 H 1.08994 * 109.47077 * 58.63677 * 16 15 13 46 46 H 1.08997 * 109.58590 * 294.83484 * 17 16 15 47 47 H 1.08993 * 109.69997 * 174.47396 * 17 16 15 48 48 H 0.97000 * 119.99779 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.59013 * 293.82373 * 27 18 17 50 50 H 1.09002 * 109.58340 * 173.39269 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2959 2.1640 -1.0338 5 8 2.6845 3.2625 -0.7208 6 6 2.7411 3.4427 0.6006 7 6 3.1735 4.6918 1.3244 8 6 2.3294 2.2622 1.1695 9 6 2.2089 1.9239 2.5991 10 8 3.1521 1.4330 3.1894 11 7 1.0518 2.1536 3.2508 12 6 0.9300 1.8118 4.6701 13 6 -0.4731 2.1716 5.1629 14 6 -1.5129 1.3882 4.3591 15 6 -0.6006 1.8154 6.6457 16 6 -2.0139 2.1451 7.1316 17 6 -2.2681 3.6472 6.9708 18 7 -2.0065 4.0244 5.5750 19 6 -2.9532 4.6902 4.8431 20 1 -4.0012 4.5580 5.0680 21 6 -2.5657 5.5349 3.8121 22 7 -1.3221 5.9601 3.7417 23 14 -3.8094 6.0685 2.5244 24 1 -4.9240 6.7951 3.1839 25 1 -3.1497 6.9633 1.5399 26 1 -4.3433 4.8716 1.8261 27 6 -0.7098 3.6740 4.9798 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 4.2484 4.6556 1.5012 34 1 2.9344 5.5648 0.7171 35 1 2.6504 4.7584 2.2784 36 1 0.2995 2.5452 2.7800 37 1 1.0992 0.7432 4.8024 38 1 1.6702 2.3704 5.2431 39 1 -1.3445 0.3194 4.4912 40 1 -2.5123 1.6451 4.7101 41 1 -1.4226 1.6424 3.3030 42 1 -0.4086 0.7511 6.7814 43 1 0.1243 2.3912 7.2212 44 1 -2.1109 1.8701 8.1818 45 1 -2.7405 1.5878 6.5405 46 1 -1.6019 4.2032 7.6305 47 1 -3.3041 3.8735 7.2225 48 1 -1.0513 6.5501 3.0210 49 1 0.0835 4.2321 5.4771 50 1 -0.7184 3.9156 3.9169 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754734720.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:27 Heat of formation + Delta-G solvation = 24.662826 kcal Electronic energy + Delta-G solvation = -31066.597059 eV Core-core repulsion = 27097.045879 eV Total energy + Delta-G solvation = -3969.551179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.83414 -39.68410 -38.30591 -35.34651 -34.82212 -33.63565 -33.19266 -31.51256 -31.24372 -29.93994 -28.10905 -26.68428 -25.99861 -25.36686 -24.60506 -23.53421 -22.21418 -20.74937 -20.35902 -19.78655 -18.28916 -17.73700 -17.55504 -16.73404 -16.30083 -15.76124 -15.23181 -14.83449 -14.60897 -14.34678 -14.08496 -13.97255 -13.66111 -13.57538 -13.31199 -13.22144 -13.20655 -12.82632 -12.76777 -12.57275 -12.31870 -12.24433 -11.71421 -11.69915 -11.54049 -11.37084 -11.01097 -10.93682 -10.89845 -10.71400 -10.47379 -10.25459 -10.18452 -10.10222 -9.90477 -9.86817 -9.61353 -9.44181 -9.32760 -8.82620 -8.54495 -6.72579 -5.87239 -3.29017 1.34939 1.92390 2.54949 2.87354 3.31411 3.38009 3.39425 3.47952 4.05306 4.24980 4.41965 4.85609 4.94095 5.03815 5.07590 5.12294 5.21751 5.23285 5.35857 5.37918 5.39652 5.45536 5.53268 5.56939 5.70212 5.72048 5.80307 5.88655 5.92340 5.94793 5.97901 6.03057 6.09393 6.11970 6.19042 6.36497 6.38438 6.48592 6.55031 6.66672 6.77780 6.82346 6.91278 6.99053 7.22297 7.49421 7.68105 7.71771 8.23109 8.31063 8.36505 9.13538 9.76595 10.34106 11.20764 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.004602 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.852048 B = 6083.069275 C = 7257.534922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.058 3.942 4 N -0.358 5.358 5 O 0.093 5.907 6 C 0.025 3.975 7 C -0.081 4.081 8 C -0.251 4.251 9 C 0.598 3.402 10 O -0.537 6.537 11 N -0.703 5.703 12 C 0.135 3.865 13 C -0.103 4.103 14 C -0.126 4.126 15 C -0.095 4.095 16 C -0.135 4.135 17 C 0.143 3.857 18 N -0.588 5.588 19 C -0.249 4.249 20 H 0.064 0.936 21 C 0.005 3.995 22 N -0.902 5.902 23 Si 0.896 3.104 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.185 3.815 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.408 0.592 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.018 0.982 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.546 -8.573 -2.939 10.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.105 4.105 4 N -0.064 5.064 5 O 0.032 5.968 6 C -0.038 4.038 7 C -0.138 4.138 8 C -0.258 4.258 9 C 0.382 3.618 10 O -0.415 6.415 11 N -0.354 5.354 12 C 0.011 3.989 13 C -0.105 4.105 14 C -0.183 4.183 15 C -0.133 4.133 16 C -0.174 4.174 17 C 0.017 3.983 18 N -0.310 5.310 19 C -0.379 4.379 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.546 5.546 23 Si 0.726 3.274 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.059 3.941 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.245 0.755 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.036 0.964 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.204 -8.937 -3.934 11.568 hybrid contribution -0.949 0.505 -0.165 1.087 sum 5.255 -8.432 -4.099 10.748 Atomic orbital electron populations 1.21745 0.93350 1.02594 1.02885 1.19990 0.96792 0.87581 1.04047 1.24708 1.00492 0.98672 0.86614 1.73570 1.16773 0.92624 1.23442 1.84511 1.62876 1.26644 1.22756 1.24672 0.98251 0.97386 0.83527 1.20515 1.02903 0.90509 0.99869 1.21930 1.13223 0.95197 0.95444 1.16829 0.82954 0.78208 0.83781 1.90791 1.38546 1.44122 1.68002 1.46076 1.14452 1.62829 1.12054 1.21460 0.97891 0.99740 0.79771 1.21550 0.92259 1.01405 0.95287 1.21726 1.00392 0.97274 0.98950 1.21342 0.97657 0.99465 0.94826 1.22043 0.96611 0.99686 0.99079 1.20929 0.98500 0.91577 0.87290 1.43968 1.15034 1.65189 1.06832 1.19118 0.87933 1.19096 1.11741 0.91815 1.24988 0.96382 0.96894 1.01128 1.70016 1.16604 1.35208 1.32796 0.86465 0.80969 0.78205 0.81746 1.20880 1.21619 1.21067 1.20793 0.86772 0.86272 1.00255 0.92219 0.91387 0.91906 0.89692 0.89399 0.88831 0.88990 0.88129 0.75513 0.92005 0.91555 0.94448 0.90910 0.93772 0.93347 0.92527 0.93184 0.91961 0.96568 0.92944 0.93647 0.96387 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 37.16 0.37 -1.23 16 2 C -0.05 -0.53 6.55 -27.88 -0.18 -0.72 16 3 C 0.06 0.83 6.84 -79.77 -0.55 0.29 16 4 N -0.36 -5.41 12.01 34.78 0.42 -5.00 16 5 O 0.09 1.35 11.06 18.66 0.21 1.55 16 6 C 0.03 0.35 7.55 -34.63 -0.26 0.09 16 7 C -0.08 -0.89 10.33 36.01 0.37 -0.52 16 8 C -0.25 -3.81 6.24 -102.89 -0.64 -4.45 16 9 C 0.60 9.76 7.60 -12.53 -0.10 9.67 16 10 O -0.54 -10.20 17.11 5.27 0.09 -10.11 16 11 N -0.70 -10.97 4.99 -61.39 -0.31 -11.28 16 12 C 0.14 2.10 4.57 -4.04 -0.02 2.09 16 13 C -0.10 -1.70 0.53 -154.39 -0.08 -1.78 16 14 C -0.13 -2.04 7.81 37.16 0.29 -1.74 16 15 C -0.09 -1.45 4.71 -26.69 -0.13 -1.58 16 16 C -0.14 -2.15 5.74 -26.61 -0.15 -2.30 16 17 C 0.14 2.80 6.52 -3.71 -0.02 2.77 16 18 N -0.59 -13.41 2.43 -172.32 -0.42 -13.82 16 19 C -0.25 -6.33 9.58 -15.06 -0.14 -6.48 16 20 H 0.06 1.62 7.88 -52.49 -0.41 1.20 16 21 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -24.01 11.20 55.49 0.62 -23.39 16 23 Si 0.90 20.59 29.59 -169.99 -5.03 15.56 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 C 0.19 3.90 3.72 -3.71 -0.01 3.89 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 1.24 8.11 -51.93 -0.42 0.81 16 36 H 0.41 6.54 6.21 -40.82 -0.25 6.29 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 1.31 5.97 -51.93 -0.31 1.00 16 41 H 0.04 0.72 6.86 -51.93 -0.36 0.36 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 48 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.02 4.97 -51.93 -0.26 1.76 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -29.30 397.52 -8.00 -37.31 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.23 Total: 5.16 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.34 Total: -1.98 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.31 Total: -53.48 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.30 Total: -8.56 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.30 -8.00 -37.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754734720.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.969 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds