Wall clock time and date at job start Tue Mar 31 2020 19:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47160 * 2 1 4 4 C 1.50704 * 115.54754 * 294.74407 * 3 2 1 5 5 O 1.21280 * 120.00314 * 123.29915 * 4 3 2 6 6 N 1.34780 * 119.99750 * 303.30301 * 4 3 2 7 7 C 1.46500 * 119.99489 * 175.01348 * 6 4 3 8 8 C 1.50703 * 109.47158 * 179.97438 * 7 6 4 9 9 C 1.29826 * 118.55575 * 94.99776 * 8 7 6 10 10 C 1.50140 * 123.28497 * 180.39959 * 9 8 7 11 11 N 1.46846 * 110.27634 * 342.92546 * 10 9 8 12 12 C 1.46902 * 110.99798 * 174.31482 * 11 10 9 13 13 C 1.50699 * 109.46879 * 66.05112 * 12 11 10 14 14 O 1.21288 * 120.00033 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99447 * 179.97438 * 13 12 11 16 16 C 1.37105 * 119.99789 * 179.72044 * 15 13 12 17 17 H 1.08000 * 119.99411 * 0.27453 * 16 15 13 18 18 C 1.38947 * 119.99927 * 180.27845 * 16 15 13 19 19 N 1.31408 * 120.00178 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99725 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47176 * 59.99670 * 20 18 16 22 22 H 1.48499 * 109.46783 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46970 * 299.99657 * 20 18 16 24 24 C 1.47240 * 110.20244 * 50.92687 * 11 10 9 25 25 C 1.50309 * 118.55446 * 275.02533 * 8 7 6 26 26 C 1.52996 * 117.50503 * 80.41622 * 3 2 1 27 27 C 1.52996 * 117.50268 * 149.07955 * 3 2 1 28 28 H 1.08995 * 109.47491 * 55.86696 * 1 2 3 29 29 H 1.09003 * 109.46893 * 175.87024 * 1 2 3 30 30 H 1.09007 * 109.47158 * 295.86261 * 1 2 3 31 31 H 1.08994 * 109.47331 * 239.99745 * 2 1 3 32 32 H 1.09008 * 109.47277 * 119.99881 * 2 1 3 33 33 H 0.96996 * 120.00461 * 355.01730 * 6 4 3 34 34 H 1.08997 * 109.47407 * 60.00122 * 7 6 4 35 35 H 1.09004 * 109.47382 * 299.99845 * 7 6 4 36 36 H 1.08002 * 118.35925 * 0.37420 * 9 8 7 37 37 H 1.09004 * 109.33317 * 222.67663 * 10 9 8 38 38 H 1.08997 * 109.33753 * 103.17251 * 10 9 8 39 39 H 1.08997 * 109.46928 * 306.04381 * 12 11 10 40 40 H 1.08999 * 109.46923 * 186.04677 * 12 11 10 41 41 H 0.96998 * 120.00409 * 359.97438 * 15 13 12 42 42 H 0.96995 * 120.00050 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.63763 * 50.88921 * 24 11 10 44 44 H 1.09000 * 109.63709 * 171.50025 * 24 11 10 45 45 H 1.09001 * 109.42547 * 283.57650 * 25 8 7 46 46 H 1.09000 * 109.43068 * 43.46884 * 25 8 7 47 47 H 1.08997 * 117.50006 * 215.00774 * 26 3 2 48 48 H 1.09006 * 117.49276 * 0.02562 * 26 3 2 49 49 H 1.08998 * 117.49688 * 359.97266 * 27 3 2 50 50 H 1.09002 * 117.50424 * 144.97348 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7200 2.2450 -1.2349 5 8 1.1112 3.2894 -1.1385 6 7 2.1105 1.8018 -2.4464 7 6 1.7062 2.5236 -3.6554 8 6 2.2697 1.8280 -4.8678 9 6 1.5230 0.9703 -5.4942 10 6 1.9793 0.2113 -6.7066 11 7 3.1625 0.8532 -7.2933 12 6 3.7029 0.0507 -8.3988 13 6 2.7103 0.0242 -9.5323 14 8 1.6562 0.6153 -9.4293 15 7 2.9940 -0.6562 -10.6606 16 6 2.0885 -0.6851 -11.6897 17 1 1.1498 -0.1589 -11.5979 18 6 2.3784 -1.3914 -12.8506 19 7 3.5208 -2.0313 -12.9624 20 14 1.1450 -1.4301 -14.2530 21 1 0.8926 -0.0461 -14.7285 22 1 1.6895 -2.2448 -15.3687 23 1 -0.1274 -2.0296 -13.7766 24 6 4.1840 1.0803 -6.2575 25 6 3.6717 2.1572 -5.2981 26 6 2.0625 2.1840 1.3381 27 6 3.3731 1.7205 0.6973 28 1 -0.3634 0.5766 -0.8506 29 1 -0.3633 -1.0250 -0.0740 30 1 -0.3634 0.4483 0.9248 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.6591 1.0051 -2.5178 34 1 2.0861 3.5443 -3.6134 35 1 0.6183 2.5431 -3.7203 36 1 0.5237 0.7937 -5.1245 37 1 1.1764 0.1919 -7.4435 38 1 2.2278 -0.8106 -6.4202 39 1 3.8871 -0.9665 -8.0531 40 1 4.6378 0.4917 -8.7447 41 1 3.8371 -1.1286 -10.7432 42 1 3.7230 -2.5246 -13.7727 43 1 4.3608 0.1555 -5.7083 44 1 5.1104 1.4156 -6.7239 45 1 3.6788 3.1240 -5.8015 46 1 4.3193 2.1997 -4.4224 47 1 1.8458 3.2521 1.3253 48 1 1.7143 1.6439 2.2186 49 1 3.8866 0.8758 1.1565 50 1 4.0189 2.4836 0.2628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755892754.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:28 Heat of formation + Delta-G solvation = -34.131492 kcal Electronic energy + Delta-G solvation = -28482.870841 eV Core-core repulsion = 24510.770149 eV Total energy + Delta-G solvation = -3972.100692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.51984 -39.34496 -37.89376 -37.19743 -35.47136 -33.94505 -33.02096 -32.24552 -31.24324 -30.77874 -28.63535 -26.35089 -24.86750 -24.07273 -23.61003 -23.01388 -22.58091 -21.76794 -19.83705 -19.24283 -17.90361 -17.67552 -17.12743 -16.34617 -16.16032 -15.82932 -15.63901 -15.23116 -14.81797 -14.55283 -14.50807 -14.25415 -14.01038 -13.86561 -13.77684 -13.52384 -13.36943 -12.92135 -12.78048 -12.65872 -12.27982 -12.20494 -12.05789 -11.88804 -11.87364 -11.59626 -11.50793 -11.35919 -11.09732 -10.88063 -10.81727 -10.52426 -10.44746 -10.40101 -10.22141 -10.04111 -9.49415 -9.27667 -8.89990 -8.48824 -7.99545 -7.85835 -6.42761 -3.83597 1.97285 2.31606 3.08943 3.19303 3.25159 3.29489 3.33947 3.88196 3.96681 4.14905 4.23317 4.37053 4.40057 4.51782 4.58677 4.71002 4.91964 5.00763 5.04840 5.12597 5.19777 5.21105 5.23992 5.30247 5.37587 5.45844 5.50784 5.51537 5.52602 5.56957 5.62720 5.67012 5.68939 5.72801 5.77162 5.89304 5.89952 5.93776 6.09188 6.20090 6.22829 6.31828 6.43161 6.89728 7.27493 7.30089 7.32709 7.54100 7.99337 8.05124 8.60660 9.17024 9.53155 10.04991 10.74860 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.001845 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.387407 B =15171.008448 C =15414.061643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 C -0.162 4.162 4 C 0.550 3.450 5 O -0.539 6.539 6 N -0.719 5.719 7 C 0.158 3.842 8 C -0.156 4.156 9 C -0.106 4.106 10 C 0.073 3.927 11 N -0.509 5.509 12 C 0.045 3.955 13 C 0.443 3.557 14 O -0.578 6.578 15 N -0.564 5.564 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.050 3.950 25 C -0.070 4.070 26 C -0.144 4.144 27 C -0.158 4.158 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.401 0.599 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.033 0.967 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.104 0.896 48 H 0.102 0.898 49 H 0.104 0.896 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 2.039 26.066 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.165 4.165 4 C 0.336 3.664 5 O -0.416 6.416 6 N -0.370 5.370 7 C 0.036 3.964 8 C -0.156 4.156 9 C -0.126 4.126 10 C -0.054 4.054 11 N -0.233 5.233 12 C -0.087 4.087 13 C 0.228 3.772 14 O -0.462 6.462 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.078 4.078 25 C -0.108 4.108 26 C -0.181 4.181 27 C -0.195 4.195 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.236 0.764 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.901 3.547 25.815 26.127 hybrid contribution 0.480 -1.549 -0.652 1.748 sum 2.381 1.998 25.163 25.354 Atomic orbital electron populations 1.21735 0.94943 1.01818 1.02394 1.21033 0.96504 0.91444 1.02768 1.21561 1.04200 0.97535 0.93206 1.19501 0.78464 0.84855 0.83598 1.90704 1.40857 1.23525 1.86522 1.46050 1.54394 1.31145 1.05427 1.20338 0.99292 0.95507 0.81287 1.20833 0.97383 1.00189 0.97234 1.22343 0.98852 0.96116 0.95255 1.21250 0.95339 0.93783 0.95031 1.62036 1.05512 1.47754 1.08004 1.21907 0.98354 0.96137 0.92258 1.19734 0.88787 0.84393 0.84257 1.90480 1.26494 1.47812 1.81395 1.41863 1.19350 1.45314 1.13510 1.19648 1.00157 1.29919 0.93135 0.87956 1.25258 0.97245 0.96482 0.98950 1.69599 1.22618 1.33082 1.29043 0.85920 0.80028 0.78413 0.79871 1.19886 1.20995 1.19927 1.22216 0.95136 0.97479 0.92986 1.20390 0.92654 0.99800 0.97940 1.22993 0.99737 1.01449 0.93910 1.23101 0.90025 1.03726 1.02658 0.92667 0.92246 0.92394 0.91157 0.90865 0.76426 0.90942 0.91129 0.87195 0.86464 0.94202 0.93447 0.89192 0.77498 0.91829 0.94900 0.90421 0.90067 0.91244 0.87714 0.87961 0.87767 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.83 37.16 0.37 -0.72 16 2 C -0.08 -0.50 5.79 -26.73 -0.15 -0.66 16 3 C -0.16 -1.26 1.91 -155.66 -0.30 -1.56 16 4 C 0.55 5.93 6.46 -10.98 -0.07 5.86 16 5 O -0.54 -7.98 16.50 5.56 0.09 -7.88 16 6 N -0.72 -6.69 5.53 -61.47 -0.34 -7.03 16 7 C 0.16 1.71 5.73 -5.19 -0.03 1.68 16 8 C -0.16 -1.77 5.26 -100.92 -0.53 -2.30 16 9 C -0.11 -1.36 9.50 -35.97 -0.34 -1.70 16 10 C 0.07 1.14 5.22 -5.28 -0.03 1.11 16 11 N -0.51 -8.22 4.46 -237.58 -1.06 -9.28 16 12 C 0.04 0.77 5.44 -4.98 -0.03 0.75 16 13 C 0.44 10.23 7.54 -10.98 -0.08 10.14 16 14 O -0.58 -15.25 13.88 5.55 0.08 -15.18 16 15 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 16 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 17 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 20 Si 0.93 20.92 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.05 0.61 5.59 -3.61 -0.02 0.59 16 25 C -0.07 -0.76 6.04 -28.04 -0.17 -0.93 16 26 C -0.14 -1.04 9.76 -26.70 -0.26 -1.30 16 27 C -0.16 -0.97 9.93 -26.70 -0.26 -1.24 16 28 H 0.05 0.50 7.59 -51.93 -0.39 0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.07 0.40 7.97 -51.93 -0.41 -0.01 16 32 H 0.07 0.36 8.09 -51.92 -0.42 -0.06 16 33 H 0.40 2.99 8.30 -40.82 -0.34 2.65 16 34 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 35 H 0.07 0.82 7.85 -51.93 -0.41 0.42 16 36 H 0.11 1.28 7.81 -52.49 -0.41 0.87 16 37 H 0.12 2.26 5.98 -51.93 -0.31 1.95 16 38 H 0.04 0.58 8.06 -51.93 -0.42 0.16 16 39 H 0.05 0.74 8.06 -51.93 -0.42 0.33 16 40 H 0.09 1.41 7.94 -51.93 -0.41 0.99 16 41 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 42 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.91 7.85 -51.93 -0.41 0.50 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 408.73 15.07 6.16 6.16 Total: -1.00 -32.51 408.73 -9.98 -42.49 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -8.40 Total: 10.66 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.15 Total: 1.83 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.73 Total: -53.98 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.17 Total: -23.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.51 -9.98 -42.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755892754.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.361 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds