Wall clock time and date at job start Tue Mar 31 2020 19:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.50702 * 109.47155 * 119.99741 * 2 1 3 5 5 N 1.34662 * 125.80294 * 300.16837 * 4 2 1 6 6 H 0.97001 * 124.85035 * 0.02562 * 5 4 2 7 7 C 1.36449 * 110.29824 * 180.30022 * 5 4 2 8 8 C 1.34484 * 108.85568 * 359.72959 * 7 5 4 9 9 C 1.36773 * 125.80120 * 120.00045 * 4 2 1 10 10 C 1.47253 * 126.94359 * 359.97438 * 9 4 2 11 11 O 1.21634 * 120.00210 * 320.36789 * 10 9 4 12 12 N 1.34778 * 120.00509 * 140.36712 * 10 9 4 13 13 C 1.46929 * 120.62751 * 354.64945 * 12 10 9 14 14 C 1.53185 * 108.77421 * 233.58028 * 13 12 10 15 15 C 1.53036 * 109.31574 * 305.36779 * 14 13 12 16 16 C 1.53043 * 109.54165 * 61.36306 * 15 14 13 17 17 C 1.52992 * 109.52240 * 178.67165 * 16 15 14 18 18 O 1.42908 * 109.46863 * 184.91816 * 17 16 15 19 19 N 1.46497 * 109.49423 * 58.58821 * 16 15 14 20 20 C 1.36937 * 119.99749 * 180.16524 * 19 16 15 21 21 H 1.08006 * 119.99789 * 0.27343 * 20 19 16 22 22 C 1.38805 * 120.00232 * 180.02562 * 20 19 16 23 23 N 1.31616 * 120.00564 * 180.02562 * 22 20 19 24 24 Si 1.86809 * 119.99901 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46843 * 89.99867 * 24 22 20 26 26 H 1.48501 * 109.47212 * 210.00273 * 24 22 20 27 27 H 1.48499 * 109.46965 * 330.00342 * 24 22 20 28 28 C 1.46920 * 120.63443 * 174.61769 * 12 10 9 29 29 H 1.09001 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47083 * 300.00234 * 1 2 3 31 31 H 1.08999 * 109.46880 * 60.00197 * 1 2 3 32 32 H 1.08995 * 109.47508 * 239.99923 * 2 1 3 33 33 H 1.08996 * 109.47484 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46460 * 299.99781 * 3 2 1 35 35 H 1.08995 * 109.46868 * 59.99531 * 3 2 1 36 36 H 1.08003 * 125.56917 * 179.74694 * 7 5 4 37 37 H 1.08004 * 126.83329 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.58332 * 353.37079 * 13 12 10 39 39 H 1.09004 * 109.58821 * 113.65187 * 13 12 10 40 40 H 1.09004 * 109.49505 * 65.31853 * 14 13 12 41 41 H 1.09001 * 109.50027 * 185.37765 * 14 13 12 42 42 H 1.09006 * 109.45568 * 301.34189 * 15 14 13 43 43 H 1.09002 * 109.46325 * 181.38519 * 15 14 13 44 44 H 1.09002 * 109.47362 * 304.91678 * 17 16 15 45 45 H 1.09002 * 109.47451 * 64.91859 * 17 16 15 46 46 H 0.96699 * 113.99957 * 179.97438 * 18 17 16 47 47 H 0.96999 * 120.00369 * 0.16301 * 19 16 15 48 48 H 0.96995 * 120.00488 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.58852 * 6.63573 * 28 12 10 50 50 H 1.08997 * 109.59108 * 246.20662 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7775 -0.3554 2.5043 6 1 1.2364 0.4045 2.7703 7 6 2.3940 -1.2138 3.3673 8 6 3.0551 -2.1446 2.6564 9 6 2.8220 -1.8270 1.2434 10 6 3.3389 -2.5590 0.0749 11 8 2.6319 -2.7237 -0.9011 12 7 4.5954 -3.0464 0.0866 13 6 5.5003 -2.7564 1.2073 14 6 6.7993 -2.1645 0.6515 15 6 7.3813 -3.1159 -0.3964 16 6 6.3897 -3.2740 -1.5513 17 6 6.9859 -4.1990 -2.6141 18 8 6.1103 -4.2551 -3.7421 19 7 6.1152 -1.9622 -2.1430 20 6 5.2478 -1.8546 -3.1971 21 1 4.7627 -2.7363 -3.5894 22 6 4.9880 -0.6118 -3.7581 23 7 4.1539 -0.5083 -4.7710 24 14 5.8211 0.9141 -3.0746 25 1 7.1052 1.1376 -3.7862 26 1 4.9360 2.0905 -3.2691 27 1 6.0845 0.7270 -1.6252 28 6 5.0860 -3.8785 -1.0204 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 2.3570 -1.1555 4.4451 37 1 3.6407 -2.9633 3.0479 38 1 5.0303 -2.0390 1.8801 39 1 5.7181 -3.6769 1.7488 40 1 6.5911 -1.1989 0.1905 41 1 7.5157 -2.0335 1.4625 42 1 7.5662 -4.0887 0.0593 43 1 8.3186 -2.7088 -0.7758 44 1 7.9569 -3.8149 -2.9267 45 1 7.1075 -5.1993 -2.1985 46 1 6.4259 -4.8245 -4.4571 47 1 6.5477 -1.1699 -1.7881 48 1 3.9727 0.3601 -5.1632 49 1 4.3429 -3.9015 -1.8174 50 1 5.2720 -4.8909 -0.6620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273904370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:50 Heat of formation + Delta-G solvation = -16.128593 kcal Electronic energy + Delta-G solvation = -32066.317959 eV Core-core repulsion = 28094.997931 eV Total energy + Delta-G solvation = -3971.320028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.21109 -39.40496 -37.37167 -35.61638 -34.94617 -33.70838 -32.12994 -31.13063 -30.68442 -29.06594 -28.38626 -26.99041 -25.51309 -25.15119 -23.09628 -22.25182 -21.71665 -21.17777 -20.32133 -18.71125 -17.82094 -17.58172 -17.22070 -16.18890 -15.71346 -15.47099 -14.90469 -14.49975 -14.34350 -14.12818 -14.00237 -13.93100 -13.87819 -13.24014 -13.23334 -13.15123 -12.73094 -12.67367 -12.53903 -12.33753 -12.10048 -12.05989 -11.92636 -11.65549 -11.14844 -10.99756 -10.90333 -10.84405 -10.77784 -10.61779 -10.54414 -10.37368 -10.07393 -9.81508 -9.30968 -9.07801 -8.83945 -8.71957 -8.52790 -8.01879 -7.81688 -6.97154 -5.40863 -2.74430 2.23421 2.62227 3.26591 3.48913 3.50984 3.57361 3.70147 4.05183 4.79334 4.83393 4.88843 5.01951 5.13056 5.18621 5.23484 5.31530 5.35361 5.38891 5.54914 5.58594 5.65066 5.68209 5.68806 5.84524 5.87755 5.91741 5.93420 5.95772 5.97217 6.02793 6.05246 6.14433 6.18651 6.20635 6.28540 6.32733 6.36394 6.45152 6.58361 6.66505 6.69517 6.91303 7.02248 7.17321 7.34400 7.58696 8.22469 8.40238 8.50957 8.79727 9.09260 9.57614 10.24432 10.39950 11.78236 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.006049 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.698775 B = 4627.376417 C = 5913.451407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C -0.144 4.144 4 C 0.107 3.893 5 N -0.554 5.554 6 H 0.411 0.589 7 C -0.023 4.023 8 C -0.172 4.172 9 C -0.216 4.216 10 C 0.589 3.411 11 O -0.523 6.523 12 N -0.592 5.592 13 C 0.107 3.893 14 C -0.133 4.133 15 C -0.118 4.118 16 C 0.194 3.806 17 C 0.076 3.924 18 O -0.529 6.529 19 N -0.728 5.728 20 C -0.193 4.193 21 H 0.117 0.883 22 C -0.003 4.003 23 N -0.938 5.938 24 Si 0.864 3.136 25 H -0.292 1.292 26 H -0.296 1.296 27 H -0.283 1.283 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.164 0.836 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.025 0.975 46 H 0.351 0.649 47 H 0.356 0.644 48 H 0.251 0.749 49 H 0.108 0.892 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -2.918 18.289 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 C -0.201 4.201 4 C -0.010 4.010 5 N -0.149 5.149 6 H 0.247 0.753 7 C -0.151 4.151 8 C -0.197 4.197 9 C -0.226 4.226 10 C 0.378 3.622 11 O -0.399 6.399 12 N -0.325 5.325 13 C -0.016 4.016 14 C -0.171 4.171 15 C -0.156 4.156 16 C 0.102 3.898 17 C -0.005 4.005 18 O -0.331 6.331 19 N -0.370 5.370 20 C -0.323 4.323 21 H 0.134 0.866 22 C -0.196 4.196 23 N -0.589 5.589 24 Si 0.697 3.303 25 H -0.220 1.220 26 H -0.223 1.223 27 H -0.210 1.210 28 C -0.012 4.012 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.182 0.818 37 H 0.160 0.840 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.054 0.946 45 H 0.043 0.957 46 H 0.196 0.804 47 H 0.190 0.810 48 H 0.061 0.939 49 H 0.126 0.874 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.111 -2.529 18.020 18.197 hybrid contribution 1.005 1.282 0.450 1.690 sum 0.894 -1.248 18.470 18.534 Atomic orbital electron populations 1.21772 0.94273 1.02299 1.01258 1.20031 0.95783 0.95598 0.94924 1.21831 1.01811 0.95099 1.01389 1.20203 0.99005 0.96470 0.85293 1.41446 1.42131 1.25875 1.05400 0.75320 1.21606 1.03008 0.95026 0.95445 1.21978 1.04932 1.01454 0.91328 1.20282 1.08106 1.00802 0.93378 1.17292 0.81293 0.78166 0.85489 1.90817 1.57463 1.57568 1.34086 1.47550 1.11614 1.52020 1.21302 1.21803 0.90580 0.99948 0.89292 1.21884 0.96706 1.00215 0.98326 1.21673 0.98443 0.99561 0.95971 1.19910 0.92478 0.87527 0.89932 1.22649 0.93022 0.96422 0.88445 1.87051 1.47460 1.70555 1.28042 1.42791 1.53957 1.01742 1.38481 1.19389 1.14710 0.95251 1.02966 0.86610 1.24567 1.00103 0.96098 0.98810 1.69676 1.39859 1.22561 1.26773 0.86843 0.79166 0.85974 0.78361 1.21984 1.22290 1.20984 1.22050 0.98946 0.90451 0.89753 0.92003 0.93832 0.91709 0.86352 0.92282 0.91597 0.93682 0.81841 0.83989 0.89062 0.92555 0.91058 0.91577 0.91613 0.91779 0.94613 0.95728 0.80391 0.81017 0.93861 0.87429 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.18 37.16 0.34 -1.57 16 2 C -0.04 -0.74 3.23 -91.77 -0.30 -1.03 16 3 C -0.14 -2.18 9.18 37.16 0.34 -1.84 16 4 C 0.11 1.68 5.68 -81.88 -0.47 1.22 16 5 N -0.55 -6.36 5.90 -9.10 -0.05 -6.41 16 6 H 0.41 3.46 8.96 -40.82 -0.37 3.10 16 7 C -0.02 -0.25 11.89 -16.82 -0.20 -0.45 16 8 C -0.17 -2.26 8.68 -37.50 -0.33 -2.58 16 9 C -0.22 -3.74 5.33 -103.35 -0.55 -4.29 16 10 C 0.59 12.39 7.34 -12.60 -0.09 12.30 16 11 O -0.52 -13.34 15.07 5.25 0.08 -13.26 16 12 N -0.59 -11.06 2.89 -174.10 -0.50 -11.56 16 13 C 0.11 1.55 5.55 -3.71 -0.02 1.53 16 14 C -0.13 -1.92 5.91 -26.62 -0.16 -2.08 16 15 C -0.12 -1.75 4.76 -26.69 -0.13 -1.88 16 16 C 0.19 3.69 0.68 -131.70 -0.09 3.60 16 17 C 0.08 1.33 6.09 37.15 0.23 1.56 16 18 O -0.53 -10.80 10.05 -35.23 -0.35 -11.15 16 19 N -0.73 -17.27 4.55 -47.12 -0.21 -17.49 16 20 C -0.19 -5.56 8.54 -15.06 -0.13 -5.69 16 21 H 0.12 3.69 5.50 -52.48 -0.29 3.40 16 22 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 23 N -0.94 -30.94 13.97 55.49 0.78 -30.16 16 24 Si 0.86 23.08 27.74 -169.99 -4.71 18.37 16 25 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 26 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 27 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 28 C 0.11 2.21 4.92 -3.71 -0.02 2.19 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.12 2.58 6.44 -51.93 -0.33 2.25 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 37 H 0.14 1.59 7.45 -52.48 -0.39 1.20 16 38 H 0.09 1.27 4.71 -51.93 -0.24 1.02 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.26 6.75 -51.93 -0.35 0.91 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.35 5.45 9.12 45.56 0.42 5.86 16 47 H 0.36 8.53 4.29 -40.82 -0.18 8.35 16 48 H 0.25 7.98 8.31 -40.82 -0.34 7.64 16 49 H 0.11 2.64 5.80 -51.93 -0.30 2.34 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -38.01 384.60 -7.97 -45.99 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -7.12 Total: 19.08 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.66 Total: 0.79 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: 0.00 Total: -65.62 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.28 Total: -24.41 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.71 Total: 18.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -38.01 -7.97 -45.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273904370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.858 kcal (2) G-P(sol) polarization free energy of solvation -38.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds