Wall clock time and date at job start Tue Mar 31 2020 19:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.50702 * 109.47155 * 119.99741 * 2 1 3 5 5 N 1.34662 * 125.80294 * 300.16837 * 4 2 1 6 6 H 0.97001 * 124.85035 * 0.02562 * 5 4 2 7 7 C 1.36449 * 110.29824 * 180.30022 * 5 4 2 8 8 C 1.34484 * 108.85568 * 359.72959 * 7 5 4 9 9 C 1.36773 * 125.80120 * 120.00045 * 4 2 1 10 10 C 1.47253 * 126.94359 * 359.97438 * 9 4 2 11 11 O 1.21634 * 120.00210 * 320.36789 * 10 9 4 12 12 N 1.34778 * 120.00509 * 140.36712 * 10 9 4 13 13 C 1.46929 * 120.62751 * 354.64945 * 12 10 9 14 14 C 1.53185 * 108.77421 * 233.58028 * 13 12 10 15 15 C 1.53036 * 109.31574 * 305.36779 * 14 13 12 16 16 C 1.53043 * 109.54165 * 61.36306 * 15 14 13 17 17 C 1.52992 * 109.52240 * 178.67165 * 16 15 14 18 18 O 1.42908 * 109.46863 * 184.91816 * 17 16 15 19 19 N 1.46497 * 109.49423 * 58.58821 * 16 15 14 20 20 C 1.36937 * 119.99749 * 180.16524 * 19 16 15 21 21 H 1.08006 * 119.99789 * 0.27343 * 20 19 16 22 22 C 1.38805 * 120.00232 * 180.02562 * 20 19 16 23 23 N 1.31616 * 120.00564 * 180.02562 * 22 20 19 24 24 Si 1.86809 * 119.99901 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46843 * 89.99867 * 24 22 20 26 26 H 1.48501 * 109.47212 * 210.00273 * 24 22 20 27 27 H 1.48499 * 109.46965 * 330.00342 * 24 22 20 28 28 C 1.46920 * 120.63443 * 174.61769 * 12 10 9 29 29 H 1.09001 * 109.46776 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47083 * 300.00234 * 1 2 3 31 31 H 1.08999 * 109.46880 * 60.00197 * 1 2 3 32 32 H 1.08995 * 109.47508 * 239.99923 * 2 1 3 33 33 H 1.08996 * 109.47484 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46460 * 299.99781 * 3 2 1 35 35 H 1.08995 * 109.46868 * 59.99531 * 3 2 1 36 36 H 1.08003 * 125.56917 * 179.74694 * 7 5 4 37 37 H 1.08004 * 126.83329 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.58332 * 353.37079 * 13 12 10 39 39 H 1.09004 * 109.58821 * 113.65187 * 13 12 10 40 40 H 1.09004 * 109.49505 * 65.31853 * 14 13 12 41 41 H 1.09001 * 109.50027 * 185.37765 * 14 13 12 42 42 H 1.09006 * 109.45568 * 301.34189 * 15 14 13 43 43 H 1.09002 * 109.46325 * 181.38519 * 15 14 13 44 44 H 1.09002 * 109.47362 * 304.91678 * 17 16 15 45 45 H 1.09002 * 109.47451 * 64.91859 * 17 16 15 46 46 H 0.96699 * 113.99957 * 179.97438 * 18 17 16 47 47 H 0.96999 * 120.00369 * 0.16301 * 19 16 15 48 48 H 0.96995 * 120.00488 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.58852 * 6.63573 * 28 12 10 50 50 H 1.08997 * 109.59108 * 246.20662 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7775 -0.3554 2.5043 6 1 1.2364 0.4045 2.7703 7 6 2.3940 -1.2138 3.3673 8 6 3.0551 -2.1446 2.6564 9 6 2.8220 -1.8270 1.2434 10 6 3.3389 -2.5590 0.0749 11 8 2.6319 -2.7237 -0.9011 12 7 4.5954 -3.0464 0.0866 13 6 5.5003 -2.7564 1.2073 14 6 6.7993 -2.1645 0.6515 15 6 7.3813 -3.1159 -0.3964 16 6 6.3897 -3.2740 -1.5513 17 6 6.9859 -4.1990 -2.6141 18 8 6.1103 -4.2551 -3.7421 19 7 6.1152 -1.9622 -2.1430 20 6 5.2478 -1.8546 -3.1971 21 1 4.7627 -2.7363 -3.5894 22 6 4.9880 -0.6118 -3.7581 23 7 4.1539 -0.5083 -4.7710 24 14 5.8211 0.9141 -3.0746 25 1 7.1052 1.1376 -3.7862 26 1 4.9360 2.0905 -3.2691 27 1 6.0845 0.7270 -1.6252 28 6 5.0860 -3.8785 -1.0204 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 2.3570 -1.1555 4.4451 37 1 3.6407 -2.9633 3.0479 38 1 5.0303 -2.0390 1.8801 39 1 5.7181 -3.6769 1.7488 40 1 6.5911 -1.1989 0.1905 41 1 7.5157 -2.0335 1.4625 42 1 7.5662 -4.0887 0.0593 43 1 8.3186 -2.7088 -0.7758 44 1 7.9569 -3.8149 -2.9267 45 1 7.1075 -5.1993 -2.1985 46 1 6.4259 -4.8245 -4.4571 47 1 6.5477 -1.1699 -1.7881 48 1 3.9727 0.3601 -5.1632 49 1 4.3429 -3.9015 -1.8174 50 1 5.2720 -4.8909 -0.6620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273904370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:50 Heat of formation + Delta-G solvation = -47.237962 kcal Electronic energy + Delta-G solvation = -32067.666962 eV Core-core repulsion = 28094.997931 eV Total energy + Delta-G solvation = -3972.669031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.30551 -40.83812 -38.96468 -37.11094 -36.18939 -35.52069 -33.94104 -32.61481 -32.02305 -30.84297 -29.45350 -28.18507 -26.97343 -26.45394 -25.22216 -23.53052 -22.95588 -22.41152 -21.37513 -20.30859 -19.64387 -19.09551 -18.37129 -17.82828 -17.13132 -16.97186 -16.38925 -16.18403 -15.71104 -15.68533 -15.49044 -15.18546 -15.09535 -14.74287 -14.65855 -14.46877 -14.28459 -13.89631 -13.84389 -13.79119 -13.47372 -13.32679 -13.28660 -13.17964 -13.01312 -12.69263 -12.49712 -12.25589 -12.10948 -12.09059 -11.88736 -11.86845 -11.68000 -11.33696 -11.32777 -10.88085 -10.62579 -10.54660 -9.62301 -9.45930 -9.07941 -8.94339 -7.77782 -5.07512 0.99433 1.27118 1.33207 1.38549 1.66107 2.12461 2.46013 2.57788 2.67720 3.37009 3.59405 3.66886 3.73441 3.86412 3.94318 4.04047 4.10582 4.18863 4.22919 4.33174 4.38963 4.44652 4.57696 4.57949 4.60180 4.62537 4.73827 4.73938 4.77118 4.77838 4.82645 4.92854 5.00980 5.02143 5.03521 5.07702 5.16787 5.21097 5.23739 5.34789 5.45354 5.46587 5.84528 5.90819 6.09963 6.17295 6.49679 6.71452 6.81395 7.14747 7.36004 7.57952 8.03314 8.19347 9.45806 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.006049 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.698775 B = 4627.376417 C = 5913.451407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.046 4.046 3 C -0.137 4.137 4 C 0.092 3.908 5 N -0.535 5.535 6 H 0.429 0.571 7 C 0.010 3.990 8 C -0.184 4.184 9 C -0.252 4.252 10 C 0.573 3.427 11 O -0.595 6.595 12 N -0.593 5.593 13 C 0.102 3.898 14 C -0.131 4.131 15 C -0.111 4.111 16 C 0.180 3.820 17 C 0.073 3.927 18 O -0.570 6.570 19 N -0.729 5.729 20 C -0.151 4.151 21 H 0.076 0.924 22 C -0.087 4.087 23 N -0.997 5.997 24 Si 0.934 3.066 25 H -0.285 1.285 26 H -0.308 1.308 27 H -0.261 1.261 28 C 0.116 3.884 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.217 0.783 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.032 0.968 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.067 0.933 46 H 0.371 0.629 47 H 0.357 0.643 48 H 0.243 0.757 49 H 0.044 0.956 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.130 -2.824 24.241 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.195 4.195 4 C -0.026 4.026 5 N -0.131 5.131 6 H 0.269 0.731 7 C -0.118 4.118 8 C -0.208 4.208 9 C -0.263 4.263 10 C 0.364 3.636 11 O -0.476 6.476 12 N -0.324 5.324 13 C -0.019 4.019 14 C -0.169 4.169 15 C -0.149 4.149 16 C 0.089 3.911 17 C -0.007 4.007 18 O -0.376 6.376 19 N -0.371 5.371 20 C -0.282 4.282 21 H 0.094 0.906 22 C -0.274 4.274 23 N -0.652 5.652 24 Si 0.765 3.235 25 H -0.212 1.212 26 H -0.236 1.236 27 H -0.186 1.186 28 C -0.008 4.008 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.234 0.766 37 H 0.181 0.819 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.051 0.949 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.218 0.782 47 H 0.190 0.810 48 H 0.052 0.948 49 H 0.062 0.938 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.239 -2.472 24.070 24.300 hybrid contribution 0.284 1.046 -1.342 1.725 sum 2.524 -1.427 22.727 22.912 Atomic orbital electron populations 1.21710 0.92227 1.01752 1.03094 1.19813 0.97520 0.95839 0.93347 1.21785 1.00094 0.94445 1.03141 1.19897 0.99524 0.96690 0.86510 1.41391 1.41674 1.26381 1.03701 0.73135 1.22378 0.99640 0.92551 0.97216 1.22189 1.06567 1.03231 0.88823 1.20281 1.09945 1.01837 0.94202 1.18097 0.81701 0.77878 0.85916 1.90775 1.59476 1.60342 1.37008 1.47738 1.11638 1.51046 1.21979 1.22169 0.89631 1.02120 0.88010 1.21909 0.97611 0.98021 0.99352 1.21700 0.97053 1.02019 0.94138 1.20428 0.93477 0.85228 0.91975 1.22727 0.92303 0.98320 0.87378 1.86991 1.49214 1.71624 1.29764 1.42787 1.52846 1.04148 1.37350 1.19195 1.12865 0.93561 1.02618 0.90633 1.25293 1.02224 0.99697 1.00213 1.69899 1.43150 1.22681 1.29515 0.85665 0.77708 0.81302 0.78789 1.21211 1.23579 1.18649 1.21860 0.97384 0.92621 0.88978 0.93725 0.89703 0.92046 0.93242 0.94806 0.92462 0.89220 0.76618 0.81887 0.88265 0.88615 0.94898 0.87013 0.87546 0.90696 0.93807 0.91537 0.78225 0.80955 0.94782 0.93751 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.18 71.98 0.66 -3.05 16 2 C -0.05 -1.61 3.23 -11.54 -0.04 -1.65 16 3 C -0.14 -4.23 9.18 71.98 0.66 -3.57 16 4 C 0.09 2.86 5.68 41.78 0.24 3.10 16 5 N -0.54 -10.34 5.90 -182.71 -1.08 -11.41 16 6 H 0.43 5.16 8.96 -92.71 -0.83 4.33 16 7 C 0.01 0.16 11.89 83.12 0.99 1.15 16 8 C -0.18 -4.20 8.68 23.62 0.21 -3.99 16 9 C -0.25 -8.77 5.33 -19.04 -0.10 -8.87 16 10 C 0.57 25.54 7.34 86.61 0.64 26.18 16 11 O -0.59 -33.78 15.07 -4.14 -0.06 -33.84 16 12 N -0.59 -22.22 2.89 -822.98 -2.38 -24.59 16 13 C 0.10 2.60 5.55 86.36 0.48 3.08 16 14 C -0.13 -3.25 5.91 30.67 0.18 -3.07 16 15 C -0.11 -2.83 4.76 30.62 0.15 -2.68 16 16 C 0.18 6.66 0.68 3.68 0.00 6.66 16 17 C 0.07 2.47 6.09 71.98 0.44 2.90 16 18 O -0.57 -24.33 10.05 -148.98 -1.50 -25.82 16 19 N -0.73 -35.40 4.55 -303.00 -1.38 -36.78 16 20 C -0.15 -9.24 8.54 84.03 0.72 -8.52 16 21 H 0.08 5.27 5.50 -2.91 -0.02 5.25 16 22 C -0.09 -5.64 5.50 84.86 0.47 -5.18 16 23 N -1.00 -71.09 13.97 21.65 0.30 -70.78 16 24 Si 0.93 50.53 27.74 68.60 1.90 52.44 16 25 H -0.28 -14.91 7.11 99.48 0.71 -14.21 16 26 H -0.31 -17.11 7.11 99.48 0.71 -16.40 16 27 H -0.26 -12.90 6.52 99.48 0.65 -12.25 16 28 C 0.12 4.66 4.92 86.37 0.43 5.09 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 2.44 6.44 -2.39 -0.02 2.43 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.16 2.90 7.45 -2.91 -0.02 2.87 16 38 H 0.10 2.41 4.71 -2.39 -0.01 2.40 16 39 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.03 1.08 6.75 -2.38 -0.02 1.06 16 41 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.37 11.99 9.12 -74.06 -0.68 11.32 16 47 H 0.36 17.10 4.29 -92.71 -0.40 16.71 16 48 H 0.24 16.73 8.31 -92.71 -0.77 15.96 16 49 H 0.04 2.36 5.80 -2.39 -0.01 2.35 16 50 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -98.71 384.60 0.93 -97.78 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: -0.98 Total: 45.45 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 6.10 Total: 7.57 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -4.53 Total: -143.57 kcal Atomic # 8 Polarization: -58.10 SS G_CDS: -1.56 Total: -59.66 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 1.90 Total: 52.44 kcal Total: -98.71 0.93 -97.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273904370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.538 kcal (2) G-P(sol) polarization free energy of solvation -98.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds