Wall clock time and date at job start Tue Mar 31 2020 19:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47341 * 2 1 4 4 C 1.50699 * 109.47173 * 179.97438 * 3 2 1 5 5 C 1.35315 * 126.66566 * 89.99854 * 4 3 2 6 6 C 1.42273 * 103.92128 * 180.02562 * 5 4 3 7 7 C 1.48334 * 126.94091 * 180.02562 * 6 5 4 8 8 O 1.21500 * 119.99448 * 359.97438 * 7 6 5 9 9 N 1.34762 * 120.00354 * 179.97438 * 7 6 5 10 10 C 1.46506 * 120.00400 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47327 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47271 * 179.97438 * 11 10 9 13 13 C 1.52990 * 109.47352 * 185.08507 * 12 11 10 14 14 H 1.09002 * 109.87509 * 55.66274 * 13 12 11 15 15 C 1.54320 * 109.88375 * 294.65150 * 13 12 11 16 16 C 1.55160 * 102.94224 * 218.39200 * 15 13 12 17 17 C 1.54910 * 101.58205 * 35.49608 * 16 15 13 18 18 N 1.47026 * 109.88473 * 176.67923 * 13 12 11 19 19 C 1.36937 * 125.64814 * 298.32132 * 18 13 12 20 20 H 1.08002 * 119.99797 * 346.80416 * 19 18 13 21 21 C 1.38807 * 120.00197 * 166.80985 * 19 18 13 22 22 N 1.31624 * 119.99767 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00128 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47265 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47070 * 119.99966 * 23 21 19 26 26 H 1.48498 * 109.47410 * 239.99713 * 23 21 19 27 27 N 1.30986 * 106.12251 * 359.97438 * 6 5 4 28 28 O 1.20907 * 111.44026 * 359.70784 * 27 6 5 29 29 H 1.08997 * 109.46888 * 300.00186 * 1 2 3 30 30 H 1.09001 * 109.46997 * 60.00585 * 1 2 3 31 31 H 1.08997 * 109.46917 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46961 * 239.99262 * 2 1 3 33 33 H 1.09004 * 109.46912 * 120.00173 * 2 1 3 34 34 H 1.09002 * 109.46990 * 59.99684 * 3 2 1 35 35 H 1.09004 * 109.47259 * 299.99961 * 3 2 1 36 36 H 1.07997 * 128.03875 * 359.97438 * 5 4 3 37 37 H 0.97010 * 120.00330 * 0.02562 * 9 7 6 38 38 H 1.08996 * 109.46783 * 300.00511 * 10 9 7 39 39 H 1.08996 * 109.46743 * 60.00123 * 10 9 7 40 40 H 1.08998 * 109.47266 * 300.00417 * 11 10 9 41 41 H 1.09006 * 109.47150 * 60.00463 * 11 10 9 42 42 H 1.09000 * 109.47049 * 305.08824 * 12 11 10 43 43 H 1.09001 * 109.46768 * 65.08198 * 12 11 10 44 44 H 1.09007 * 110.71827 * 336.74872 * 15 13 12 45 45 H 1.08997 * 110.72638 * 100.02536 * 15 13 12 46 46 H 1.08999 * 111.00891 * 153.57484 * 16 15 13 47 47 H 1.09002 * 111.00379 * 277.38665 * 16 15 13 48 48 H 1.09002 * 110.36274 * 81.83659 * 17 16 15 49 49 H 1.09004 * 110.36723 * 204.15341 * 17 16 15 50 50 H 0.97001 * 119.99822 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3556 1.4422 -1.0844 6 6 5.6674 1.4416 -0.5338 7 6 6.9482 1.4417 -1.2820 8 8 6.9420 1.4419 -2.4970 9 7 8.1188 1.4416 -0.6142 10 6 9.3838 1.4412 -1.3531 11 6 10.5518 1.4418 -0.3648 12 6 11.8729 1.4407 -1.1366 13 6 13.0379 1.3135 -0.1531 14 1 12.9082 0.4230 0.4619 15 6 13.1056 2.5664 0.7453 16 6 14.6313 2.8104 0.8872 17 6 15.1451 2.3886 -0.5120 18 7 14.3076 1.2317 -0.8899 19 6 14.6536 0.2475 -1.7770 20 1 14.0724 -0.6613 -1.8289 21 6 15.7513 0.4179 -2.6093 22 7 16.4593 1.5256 -2.5462 23 14 16.2236 -0.9249 -3.8189 24 1 15.2751 -2.0605 -3.6930 25 1 16.1710 -0.3863 -5.2018 26 1 17.6006 -1.3957 -3.5232 27 7 5.5158 1.4421 0.7672 28 8 4.3469 1.4486 1.0760 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 4.0711 1.4416 -2.1263 37 1 8.1238 1.4412 0.3559 38 1 9.4381 0.5511 -1.9798 39 1 9.4385 2.3310 -1.9802 40 1 10.4972 2.3322 0.2616 41 1 10.4973 0.5522 0.2627 42 1 11.8884 0.5991 -1.8291 43 1 11.9685 2.3722 -1.6946 44 1 12.6228 3.4151 0.2606 45 1 12.6546 2.3686 1.7177 46 1 14.8426 3.8621 1.0804 47 1 15.0570 2.1789 1.6670 48 1 15.0142 3.2024 -1.2253 49 1 16.1935 2.0950 -0.4585 50 1 17.2266 1.6445 -3.1276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663114769.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:04 Heat of formation + Delta-G solvation = 22.293146 kcal Electronic energy + Delta-G solvation = -27789.274012 eV Core-core repulsion = 23819.620076 eV Total energy + Delta-G solvation = -3969.653936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.44442 -39.76398 -37.82545 -36.25898 -35.61765 -34.30467 -32.97937 -32.26602 -31.90421 -29.39911 -28.24329 -27.55238 -25.56583 -24.55388 -23.59425 -23.08973 -22.17121 -21.56014 -20.27205 -20.03568 -19.10759 -18.16102 -17.95919 -17.06348 -16.71739 -16.03465 -15.73962 -15.69058 -15.06191 -14.92687 -14.44016 -14.30008 -14.10149 -13.93871 -13.83033 -13.69546 -12.98490 -12.90340 -12.36511 -12.19812 -12.04874 -11.93841 -11.91917 -11.86126 -11.71912 -11.45910 -11.28067 -11.02961 -10.82327 -10.80035 -10.76390 -10.55689 -10.42863 -10.03183 -9.96948 -9.84550 -9.75039 -9.59282 -9.58470 -9.24798 -8.55631 -6.74784 -5.70677 -3.05425 0.77414 1.30187 2.50390 2.77311 2.93709 3.41017 3.47250 3.49211 3.64546 4.03973 4.36431 4.38009 4.51597 4.58608 4.64375 4.82610 4.96675 5.03434 5.08493 5.13850 5.16118 5.18592 5.37548 5.44764 5.47106 5.54949 5.56660 5.61425 5.62624 5.69880 5.73510 5.86404 5.93757 6.00689 6.10988 6.24337 6.32676 6.37192 6.44379 6.59368 6.72088 6.75158 6.97253 7.17133 7.21072 7.59007 7.64636 7.65885 7.84160 7.88867 8.32703 9.23828 9.85672 10.55043 11.41552 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020765 B = 0.001737 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.119760 B =16115.554379 C =17043.303679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.039 4.039 4 C -0.031 4.031 5 C -0.181 4.181 6 C -0.022 4.022 7 C 0.594 3.406 8 O -0.522 6.522 9 N -0.711 5.711 10 C 0.117 3.883 11 C -0.128 4.128 12 C -0.121 4.121 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.125 4.125 16 C -0.150 4.150 17 C 0.171 3.829 18 N -0.597 5.597 19 C -0.224 4.224 20 H 0.075 0.925 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.291 1.291 27 N -0.332 5.332 28 O 0.122 5.878 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.181 0.819 37 H 0.406 0.594 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.023 0.977 49 H 0.072 0.928 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.969 1.350 8.600 31.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.077 4.077 4 C -0.094 4.094 5 C -0.203 4.203 6 C -0.181 4.181 7 C 0.377 3.623 8 O -0.396 6.396 9 N -0.362 5.362 10 C -0.005 4.005 11 C -0.166 4.166 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.163 4.163 16 C -0.189 4.189 17 C 0.046 3.954 18 N -0.321 5.321 19 C -0.353 4.353 20 H 0.093 0.907 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.739 3.261 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 N -0.033 5.033 28 O 0.047 5.953 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.198 0.802 37 H 0.241 0.759 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.041 0.959 49 H 0.090 0.910 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -28.820 1.300 8.527 30.083 hybrid contribution -0.011 -0.622 -1.051 1.221 sum -28.831 0.678 7.476 29.792 Atomic orbital electron populations 1.21767 0.94712 1.02336 1.02198 1.21578 0.96494 0.94863 1.03282 1.20284 0.83091 0.99194 1.05163 1.24513 0.96249 1.03247 0.85410 1.22449 0.89659 1.06625 1.01585 1.23569 0.96914 1.07514 0.90150 1.16892 0.81651 0.77324 0.86411 1.90823 1.86730 1.49615 1.12455 1.45991 1.05662 1.73599 1.10973 1.21638 0.80838 1.02956 0.95105 1.21852 0.94326 1.02298 0.98163 1.22031 0.92337 1.02563 0.99249 1.20916 0.86934 0.94929 0.91771 0.95151 1.22594 0.97083 0.98129 0.98451 1.23008 0.95504 0.99545 1.00817 1.21486 0.96268 0.88989 0.88608 1.44629 1.11648 1.26564 1.49259 1.19020 1.10470 0.94880 1.10893 0.90714 1.24873 0.99114 0.97303 0.99048 1.69949 1.20148 1.25363 1.41116 0.86098 0.77996 0.80888 0.81135 1.20473 1.21745 1.21819 1.74179 0.97301 1.16232 1.15602 1.84776 1.11081 1.65986 1.33483 0.92325 0.92354 0.92180 0.91188 0.91205 0.88983 0.88149 0.80199 0.75912 0.90880 0.90957 0.91549 0.91607 0.91619 0.92120 0.92052 0.92626 0.92565 0.92488 0.95928 0.90997 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.91 37.16 0.37 -0.04 16 2 C -0.12 -0.45 5.92 -26.73 -0.16 -0.61 16 3 C -0.04 -0.14 5.78 -27.89 -0.16 -0.30 16 4 C -0.03 -0.22 6.73 -35.35 -0.24 -0.46 16 5 C -0.18 -1.65 10.92 -39.07 -0.43 -2.08 16 6 C -0.02 -0.26 7.19 -82.52 -0.59 -0.85 16 7 C 0.59 8.22 7.85 -12.11 -0.10 8.13 16 8 O -0.52 -8.78 16.95 5.37 0.09 -8.68 16 9 N -0.71 -8.84 5.55 -61.10 -0.34 -9.18 16 10 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 11 C -0.13 -1.72 5.07 -26.73 -0.14 -1.86 16 12 C -0.12 -2.17 4.69 -26.73 -0.13 -2.30 16 13 C 0.16 3.26 3.18 -66.96 -0.21 3.05 16 14 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 15 C -0.12 -2.15 5.61 -24.90 -0.14 -2.29 16 16 C -0.15 -2.86 7.09 -24.58 -0.17 -3.03 16 17 C 0.17 4.19 5.46 -2.35 -0.01 4.17 16 18 N -0.60 -15.09 3.14 -162.32 -0.51 -15.60 16 19 C -0.22 -6.21 9.75 -15.06 -0.15 -6.36 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 22 N -0.92 -27.13 10.54 55.49 0.59 -26.55 16 23 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 N -0.33 -3.68 11.84 33.30 0.39 -3.29 16 28 O 0.12 1.12 11.18 17.24 0.19 1.32 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.41 4.34 8.23 -40.82 -0.34 4.00 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.82 7.57 -51.93 -0.39 0.43 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.29 7.89 -51.93 -0.41 0.88 16 43 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 44 H 0.06 1.01 7.79 -51.93 -0.40 0.61 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.02 0.60 8.10 -51.93 -0.42 0.18 16 49 H 0.07 1.96 6.83 -51.93 -0.35 1.61 16 50 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 409.04 15.07 6.16 6.16 Total: -1.00 -32.72 409.04 -9.44 -42.16 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.63 Total: -0.06 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.37 Total: -3.56 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.13 Total: -54.62 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.28 Total: -7.37 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.72 -9.44 -42.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663114769.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.456 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds