Wall clock time and date at job start Tue Mar 31 2020 19:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46777 * 2 1 4 4 C 1.50695 * 109.46752 * 180.02562 * 3 2 1 5 5 C 1.35317 * 126.66935 * 90.28631 * 4 3 2 6 6 C 1.42267 * 103.92235 * 180.08972 * 5 4 3 7 7 C 1.48332 * 126.93988 * 179.91367 * 6 5 4 8 8 O 1.21501 * 119.99817 * 359.70443 * 7 6 5 9 9 N 1.34770 * 120.00423 * 179.70491 * 7 6 5 10 10 C 1.46504 * 119.99978 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46979 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47040 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46895 * 174.93436 * 12 11 10 14 14 H 1.09007 * 109.87324 * 306.13617 * 13 12 11 15 15 C 1.54321 * 110.01252 * 67.23881 * 13 12 11 16 16 C 1.55149 * 102.94179 * 141.68277 * 15 13 12 17 17 C 1.54908 * 101.58153 * 324.49640 * 16 15 13 18 18 N 1.47023 * 109.87930 * 185.12435 * 13 12 11 19 19 C 1.36931 * 125.65028 * 61.45423 * 18 13 12 20 20 H 1.08002 * 120.00168 * 14.67814 * 19 18 13 21 21 C 1.38815 * 119.99820 * 194.68515 * 19 18 13 22 22 N 1.31619 * 120.00482 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99755 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47616 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47307 * 119.99874 * 23 21 19 26 26 H 1.48497 * 109.47292 * 239.99480 * 23 21 19 27 27 N 1.30981 * 106.12514 * 359.64271 * 6 5 4 28 28 O 1.20903 * 111.44262 * 0.23472 * 27 6 5 29 29 H 1.08997 * 109.47254 * 59.99956 * 1 2 3 30 30 H 1.09004 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47410 * 299.99895 * 1 2 3 32 32 H 1.08996 * 109.46853 * 240.00260 * 2 1 3 33 33 H 1.08997 * 109.47040 * 119.99535 * 2 1 3 34 34 H 1.08996 * 109.46937 * 60.00011 * 3 2 1 35 35 H 1.08997 * 109.46955 * 299.99587 * 3 2 1 36 36 H 1.07999 * 128.03350 * 359.96289 * 5 4 3 37 37 H 0.96998 * 120.00251 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.46704 * 60.00456 * 10 9 7 39 39 H 1.08991 * 109.47259 * 300.00065 * 10 9 7 40 40 H 1.08996 * 109.47046 * 60.00171 * 11 10 9 41 41 H 1.09001 * 109.47140 * 300.00302 * 11 10 9 42 42 H 1.09003 * 109.46886 * 54.93221 * 12 11 10 43 43 H 1.08996 * 109.46795 * 294.93480 * 12 11 10 44 44 H 1.08995 * 110.72025 * 23.31644 * 15 13 12 45 45 H 1.09007 * 110.71831 * 260.04719 * 15 13 12 46 46 H 1.09007 * 111.00405 * 206.42347 * 16 15 13 47 47 H 1.08997 * 111.01050 * 82.57372 * 16 15 13 48 48 H 1.09003 * 110.36843 * 155.85490 * 17 16 15 49 49 H 1.09001 * 110.36413 * 278.06156 * 17 16 15 50 50 H 0.96995 * 120.00670 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3545 1.4482 -1.0863 6 6 5.6668 1.4432 -0.5368 7 6 6.9470 1.4443 -1.2860 8 8 6.9398 1.4446 -2.5010 9 7 8.1181 1.4450 -0.6191 10 6 9.3825 1.4456 -1.3592 11 6 10.5513 1.4470 -0.3719 12 6 11.8718 1.4483 -1.1448 13 6 13.0376 1.5770 -0.1623 14 1 12.8916 2.4503 0.4735 15 6 13.1386 0.3059 0.7069 16 6 14.6702 0.0956 0.8382 17 6 15.1685 0.5613 -0.5526 18 7 14.3025 1.7023 -0.9012 19 6 14.6229 2.7113 -1.7697 20 1 14.0354 3.6174 -1.7852 21 6 15.7028 2.5695 -2.6303 22 7 16.4191 1.4655 -2.6112 23 14 16.1394 3.9457 -3.8156 24 1 15.1861 5.0707 -3.6408 25 1 17.5197 4.4183 -3.5386 26 1 16.0594 3.4418 -5.2102 27 7 5.5163 1.4433 0.7643 28 8 4.3477 1.4429 1.0741 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 4.0692 1.4530 -2.1279 37 1 8.1240 1.4452 0.3508 38 1 9.4360 2.3356 -1.9862 39 1 9.4370 0.5557 -1.9861 40 1 10.4980 0.5573 0.2555 41 1 10.4966 2.3373 0.2547 42 1 11.8862 2.2893 -1.8380 43 1 11.9674 0.5164 -1.7020 44 1 12.6745 -0.5427 0.2044 45 1 12.6866 0.4707 1.6850 46 1 14.9073 -0.9549 1.0066 47 1 15.0838 0.7196 1.6305 48 1 16.2097 0.8787 -0.4959 49 1 15.0561 -0.2395 -1.2835 50 1 17.1739 1.3665 -3.2123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663114770.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:09 Heat of formation + Delta-G solvation = 21.921251 kcal Electronic energy + Delta-G solvation = -27790.968058 eV Core-core repulsion = 23821.297996 eV Total energy + Delta-G solvation = -3969.670063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.44352 -39.76104 -37.83127 -36.25871 -35.62052 -34.30403 -32.97799 -32.27038 -31.90710 -29.39519 -28.25404 -27.55203 -25.57065 -24.54741 -23.59483 -23.08838 -22.17247 -21.54646 -20.26766 -20.04045 -19.11991 -18.16176 -17.95637 -17.06276 -16.71692 -16.02758 -15.74743 -15.68165 -15.05289 -14.92601 -14.44842 -14.29540 -14.10649 -13.94297 -13.81998 -13.70626 -12.98735 -12.88879 -12.36635 -12.20092 -12.04184 -11.94179 -11.92239 -11.86457 -11.72185 -11.46335 -11.28253 -11.02047 -10.82101 -10.79793 -10.75845 -10.55772 -10.42541 -10.03160 -9.96793 -9.84427 -9.74645 -9.60974 -9.59293 -9.24523 -8.54705 -6.73614 -5.71423 -3.06335 0.77579 1.30317 2.50550 2.77535 2.93902 3.40836 3.47199 3.49092 3.64710 4.03999 4.36475 4.37942 4.51527 4.58691 4.64447 4.82724 4.96867 5.03491 5.08629 5.13910 5.16513 5.18558 5.37823 5.44730 5.46953 5.54921 5.56615 5.61282 5.63105 5.69759 5.73745 5.86467 5.94214 6.01312 6.11551 6.24434 6.33041 6.37462 6.44718 6.59336 6.72545 6.75303 6.97928 7.17340 7.21326 7.58236 7.64824 7.67206 7.84055 7.89094 8.33010 9.24139 9.85699 10.55234 11.41082 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.001729 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.771336 B =16188.320922 C =17059.905806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.039 4.039 4 C -0.031 4.031 5 C -0.181 4.181 6 C -0.022 4.022 7 C 0.594 3.406 8 O -0.522 6.522 9 N -0.711 5.711 10 C 0.117 3.883 11 C -0.128 4.128 12 C -0.121 4.121 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.124 4.124 16 C -0.150 4.150 17 C 0.173 3.827 18 N -0.596 5.596 19 C -0.226 4.226 20 H 0.075 0.925 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 N -0.332 5.332 28 O 0.122 5.878 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.181 0.819 37 H 0.406 0.594 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.024 0.976 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.822 -3.085 8.673 31.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.077 4.077 4 C -0.094 4.094 5 C -0.203 4.203 6 C -0.181 4.181 7 C 0.377 3.623 8 O -0.396 6.396 9 N -0.362 5.362 10 C -0.005 4.005 11 C -0.166 4.166 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.162 4.162 16 C -0.189 4.189 17 C 0.048 3.952 18 N -0.320 5.320 19 C -0.354 4.354 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.565 5.565 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 N -0.033 5.033 28 O 0.047 5.953 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.198 0.802 37 H 0.241 0.759 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.042 0.958 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -28.676 -3.030 8.598 30.091 hybrid contribution -0.023 0.666 -1.042 1.237 sum -28.700 -2.365 7.556 29.772 Atomic orbital electron populations 1.21768 0.94716 1.02330 1.02204 1.21577 0.96493 0.94866 1.03269 1.20285 0.83092 0.99191 1.05170 1.24515 0.96236 1.03253 0.85419 1.22448 0.89666 1.06621 1.01579 1.23565 0.96911 1.07517 0.90151 1.16894 0.81651 0.77324 0.86413 1.90824 1.86730 1.49611 1.12455 1.45990 1.05660 1.73602 1.10973 1.21639 0.80848 1.02959 0.95090 1.21851 0.94332 1.02281 0.98165 1.22028 0.92314 1.02579 0.99251 1.20927 0.87004 0.94742 0.91864 0.95156 1.22589 0.97044 0.98071 0.98545 1.23011 0.95463 0.99576 1.00846 1.21397 0.95745 0.89190 0.88876 1.44550 1.11005 1.26034 1.50459 1.19012 1.11602 0.93964 1.10837 0.90767 1.24897 0.99235 0.97265 0.98834 1.69947 1.20625 1.25664 1.40233 0.86109 0.77902 0.81119 0.81045 1.20456 1.21803 1.21732 1.74175 0.97329 1.16227 1.15580 1.84777 1.11070 1.65992 1.33488 0.92354 0.92184 0.92324 0.91193 0.91207 0.88974 0.88150 0.80198 0.75916 0.90871 0.90959 0.91585 0.91598 0.91520 0.92162 0.92052 0.92638 0.92566 0.92500 0.91328 0.95832 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.40 9.91 37.16 0.37 -0.04 16 2 C -0.12 -0.44 5.92 -26.73 -0.16 -0.60 16 3 C -0.04 -0.14 5.78 -27.88 -0.16 -0.30 16 4 C -0.03 -0.23 6.73 -35.35 -0.24 -0.46 16 5 C -0.18 -1.65 10.92 -39.08 -0.43 -2.08 16 6 C -0.02 -0.26 7.19 -82.53 -0.59 -0.85 16 7 C 0.59 8.24 7.85 -12.11 -0.10 8.14 16 8 O -0.52 -8.79 16.95 5.36 0.09 -8.70 16 9 N -0.71 -8.86 5.55 -61.09 -0.34 -9.20 16 10 C 0.12 1.59 5.67 -4.04 -0.02 1.56 16 11 C -0.13 -1.73 5.10 -26.73 -0.14 -1.86 16 12 C -0.12 -2.17 4.72 -26.73 -0.13 -2.30 16 13 C 0.16 3.27 3.16 -66.95 -0.21 3.05 16 14 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 15 C -0.12 -2.15 5.71 -24.90 -0.14 -2.30 16 16 C -0.15 -2.87 7.08 -24.59 -0.17 -3.04 16 17 C 0.17 4.23 5.41 -2.53 -0.01 4.21 16 18 N -0.60 -15.08 3.13 -162.58 -0.51 -15.59 16 19 C -0.23 -6.25 9.70 -15.06 -0.15 -6.40 16 20 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 22 N -0.92 -27.11 10.58 55.49 0.59 -26.52 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 27 N -0.33 -3.69 11.84 33.29 0.39 -3.30 16 28 O 0.12 1.13 11.18 17.22 0.19 1.32 16 29 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.41 4.35 8.23 -40.82 -0.34 4.01 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.82 7.65 -51.93 -0.40 0.42 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.31 7.84 -51.93 -0.41 0.91 16 43 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 44 H 0.06 1.02 7.78 -51.93 -0.40 0.61 16 45 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.07 1.87 6.93 -51.93 -0.36 1.51 16 49 H 0.02 0.62 8.06 -51.93 -0.42 0.21 16 50 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 409.12 15.07 6.17 6.17 Total: -1.00 -32.72 409.12 -9.44 -42.16 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.63 Total: -0.09 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.37 Total: -3.52 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.13 Total: -54.61 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.28 Total: -7.38 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.72 -9.44 -42.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663114770.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.084 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds