Wall clock time and date at job start Tue Mar 31 2020 21:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47165 * 2 1 4 4 C 1.53002 * 109.46783 * 175.52399 * 3 2 1 5 5 C 1.52999 * 109.47039 * 294.24060 * 4 3 2 6 6 N 1.46495 * 109.47586 * 295.52449 * 3 2 1 7 7 N 1.28444 * 125.18890 * 305.64247 * 6 3 2 8 8 C 1.30868 * 110.92554 * 179.97438 * 7 6 3 9 9 C 1.50706 * 126.06724 * 180.02562 * 8 7 6 10 10 C 1.39667 * 107.86181 * 359.77230 * 8 7 6 11 11 C 1.36604 * 125.19421 * 125.61163 * 6 3 2 12 12 C 1.47169 * 126.87788 * 359.97438 * 11 6 3 13 13 O 1.21626 * 120.00303 * 6.35535 * 12 11 6 14 14 N 1.34776 * 119.99577 * 186.36416 * 12 11 6 15 15 C 1.47027 * 125.64906 * 354.88456 * 14 12 11 16 16 C 1.54318 * 107.26994 * 180.79805 * 15 14 12 17 17 C 1.55157 * 102.94350 * 22.19639 * 16 15 14 18 18 O 1.42900 * 111.00295 * 82.57188 * 17 16 15 19 19 C 1.50706 * 111.00139 * 206.38435 * 17 16 15 20 20 H 1.07995 * 120.00048 * 0.02562 * 19 17 16 21 21 C 1.37878 * 119.99589 * 179.97438 * 19 17 16 22 22 N 1.31513 * 120.00212 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99775 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47237 * 90.00035 * 23 21 19 25 25 H 1.48506 * 109.47400 * 210.00167 * 23 21 19 26 26 H 1.48499 * 109.47180 * 330.00292 * 23 21 19 27 27 C 1.47419 * 125.64851 * 174.58327 * 14 12 11 28 28 H 1.09004 * 109.47415 * 65.02373 * 1 2 3 29 29 H 1.08991 * 109.47427 * 185.02602 * 1 2 3 30 30 H 1.09003 * 109.46812 * 305.02694 * 1 2 3 31 31 H 1.09004 * 109.46378 * 240.00683 * 2 1 3 32 32 H 1.08992 * 109.46991 * 120.00661 * 2 1 3 33 33 H 1.09003 * 109.47198 * 55.52591 * 3 2 1 34 34 H 1.08995 * 109.47368 * 54.24396 * 4 3 2 35 35 H 1.09004 * 109.46726 * 174.24468 * 4 3 2 36 36 H 1.08997 * 109.47181 * 305.52645 * 5 4 3 37 37 H 1.09001 * 109.47228 * 65.53176 * 5 4 3 38 38 H 1.08999 * 109.47198 * 185.52843 * 5 4 3 39 39 H 1.09000 * 109.47231 * 89.97344 * 9 8 7 40 40 H 1.08998 * 109.47046 * 209.97282 * 9 8 7 41 41 H 1.09001 * 109.46994 * 329.97263 * 9 8 7 42 42 H 1.08005 * 127.32265 * 180.23835 * 10 8 7 43 43 H 1.08992 * 109.88554 * 300.21798 * 15 14 12 44 44 H 1.09002 * 109.87749 * 61.22745 * 15 14 12 45 45 H 1.09001 * 110.72058 * 140.56199 * 16 15 14 46 46 H 1.09005 * 110.72119 * 263.82950 * 16 15 14 47 47 H 0.96704 * 113.99263 * 179.97438 * 18 17 16 48 48 H 0.96999 * 120.00059 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.36683 * 274.96975 * 27 14 12 50 50 H 1.09004 * 110.36501 * 37.29576 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5659 1.4438 0.1126 5 6 3.9771 0.8865 1.4768 6 7 1.6418 2.1013 -1.2463 7 7 1.8912 1.6632 -2.4277 8 6 1.4075 2.4702 -3.3373 9 6 1.5045 2.2849 -4.8298 10 6 0.7803 3.5306 -2.6793 11 6 0.9479 3.2751 -1.3295 12 6 0.4688 4.0992 -0.2083 13 8 0.7802 3.8143 0.9324 14 7 -0.3153 5.1694 -0.4455 15 6 -0.6795 5.6875 -1.7724 16 6 -1.5695 6.9286 -1.5511 17 6 -1.1933 7.3742 -0.1133 18 8 -0.0017 8.1629 -0.1167 19 6 -2.3302 8.1210 0.5356 20 1 -3.2514 8.2785 -0.0056 21 6 -2.1945 8.6022 1.8205 22 7 -1.0728 8.4100 2.4797 23 14 -3.6038 9.5273 2.6251 24 1 -4.4803 8.5672 3.3428 25 1 -3.0598 10.5171 3.5893 26 1 -4.3917 10.2330 1.5828 27 6 -0.9548 6.0107 0.5823 28 1 -0.3634 0.4339 -0.9316 29 1 -0.3634 -1.0236 0.0900 30 1 -0.3633 0.5899 0.8416 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6127 1.9789 0.8472 34 1 3.9890 0.8222 -0.6764 35 1 3.9368 2.4637 0.0100 36 1 3.4754 1.4479 2.2649 37 1 3.6924 -0.1637 1.5411 38 1 5.0567 0.9781 1.5963 39 1 0.6432 1.7176 -5.1823 40 1 1.5212 3.2600 -5.3166 41 1 2.4194 1.7432 -5.0699 42 1 0.2739 4.3722 -3.1284 43 1 0.2198 5.9691 -2.3201 44 1 -1.2296 4.9284 -2.3285 45 1 -1.3285 7.7096 -2.2723 46 1 -2.6248 6.6617 -1.6085 47 1 0.2725 8.4648 0.7601 48 1 -0.9772 8.7489 3.3835 49 1 -1.9030 5.5732 0.8946 50 1 -0.2919 6.1328 1.4389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:26 Heat of formation + Delta-G solvation = -16.930601 kcal Electronic energy + Delta-G solvation = -30744.790833 eV Core-core repulsion = 26773.436028 eV Total energy + Delta-G solvation = -3971.354805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.47746 -39.26575 -37.35501 -36.85702 -34.42336 -32.56844 -32.19582 -31.89320 -31.13345 -29.95592 -28.48800 -27.83732 -25.63058 -25.38231 -23.57511 -22.94045 -21.56753 -21.28491 -20.38360 -19.61031 -18.30215 -17.29735 -16.87618 -16.19691 -16.04963 -15.30992 -15.05149 -14.84091 -14.71105 -14.40449 -14.27429 -14.16210 -13.55945 -13.25163 -13.17322 -13.11795 -12.89526 -12.68743 -12.48051 -12.46912 -12.27153 -12.02053 -11.96093 -11.66473 -11.59453 -11.46618 -11.11177 -11.09211 -11.03565 -10.84467 -10.71853 -10.65381 -10.53720 -10.34697 -10.21375 -9.54084 -9.40237 -8.88983 -8.73606 -8.69350 -8.44731 -7.87725 -6.33992 -4.43802 1.54513 2.50064 2.70607 3.17229 3.25425 3.27891 3.55338 3.57851 4.22041 4.35502 4.68855 4.71180 4.76013 4.93695 5.00992 5.06826 5.11325 5.21718 5.25896 5.34305 5.46908 5.52530 5.56104 5.60670 5.62525 5.66111 5.75458 5.76671 5.78097 5.85010 5.87853 5.93820 5.97194 5.99237 6.05429 6.12224 6.14321 6.25787 6.44124 6.66320 6.67786 6.76562 6.87685 6.97268 7.17965 7.27670 7.69416 7.93293 8.04609 8.26526 8.54604 8.60662 9.26357 9.41556 10.73243 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.003412 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.405230 B = 8203.428003 C = 9201.375210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.135 3.865 4 C -0.128 4.128 5 C -0.149 4.149 6 N -0.248 5.248 7 N -0.279 5.279 8 C 0.012 3.988 9 C -0.062 4.062 10 C -0.201 4.201 11 C -0.021 4.021 12 C 0.593 3.407 13 O -0.553 6.553 14 N -0.589 5.589 15 C 0.098 3.902 16 C -0.120 4.120 17 C 0.250 3.750 18 O -0.583 6.583 19 C -0.538 4.538 20 H 0.068 0.932 21 C 0.071 3.929 22 N -0.895 5.895 23 Si 0.905 3.095 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.094 3.906 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.168 0.832 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.386 0.614 48 H 0.272 0.728 49 H 0.064 0.936 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 -13.571 -8.298 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.035 3.965 4 C -0.166 4.166 5 C -0.207 4.207 6 N -0.035 5.035 7 N -0.112 5.112 8 C -0.144 4.144 9 C -0.121 4.121 10 C -0.230 4.230 11 C -0.150 4.150 12 C 0.380 3.620 13 O -0.433 6.433 14 N -0.320 5.320 15 C -0.025 4.025 16 C -0.158 4.158 17 C 0.209 3.791 18 O -0.394 6.394 19 C -0.577 4.577 20 H 0.086 0.914 21 C -0.132 4.132 22 N -0.534 5.534 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.196 1.196 27 C -0.027 4.027 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.185 0.815 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.097 0.903 47 H 0.239 0.761 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.858 -14.903 -7.858 17.837 hybrid contribution -1.122 1.335 1.014 2.017 sum 4.735 -13.568 -6.844 15.917 Atomic orbital electron populations 1.21760 0.95199 1.01763 1.02300 1.21895 0.96798 0.94533 1.03498 1.22254 0.96532 0.94735 0.83027 1.21806 0.93289 1.02532 0.98978 1.21770 1.01622 1.01059 0.96249 1.45754 1.37367 1.15042 1.05381 1.72960 1.22413 1.25873 0.89974 1.21959 1.02096 0.94101 0.96273 1.20022 1.02446 1.02583 0.87015 1.22647 1.06735 1.02439 0.91152 1.21517 1.05219 0.92554 0.95694 1.16544 0.78814 0.80156 0.86470 1.90686 1.58844 1.71165 1.22640 1.48380 1.46621 1.27026 1.09928 1.22380 0.98904 0.96384 0.84844 1.22680 0.98526 0.95134 0.99421 1.19586 0.84440 0.85960 0.89101 1.86073 1.44675 1.71978 1.36630 1.21501 1.00394 1.36379 0.99383 0.91359 1.25083 0.96282 0.95000 0.96822 1.69562 1.25276 1.45735 1.12840 0.86381 0.81750 0.79540 0.79128 1.20392 1.20955 1.19624 1.23404 0.96374 0.91398 0.91485 0.93008 0.92337 0.92234 0.90558 0.89772 0.84565 0.90932 0.91345 0.91854 0.92252 0.92075 0.91194 0.90731 0.91377 0.81484 0.91446 0.91881 0.90426 0.90308 0.76131 0.91817 0.91786 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.73 37.16 0.36 -1.52 16 2 C -0.13 -1.50 5.30 -26.73 -0.14 -1.65 16 3 C 0.13 1.90 2.38 -67.93 -0.16 1.74 16 4 C -0.13 -1.57 5.65 -26.73 -0.15 -1.73 16 5 C -0.15 -1.48 9.55 37.16 0.35 -1.13 16 6 N -0.25 -3.95 2.61 -50.69 -0.13 -4.08 16 7 N -0.28 -4.24 11.43 33.64 0.38 -3.86 16 8 C 0.01 0.17 7.22 -82.47 -0.60 -0.42 16 9 C -0.06 -0.61 10.45 36.01 0.38 -0.23 16 10 C -0.20 -3.04 9.37 -38.99 -0.37 -3.41 16 11 C -0.02 -0.38 6.92 -82.06 -0.57 -0.94 16 12 C 0.59 12.06 7.82 -12.63 -0.10 11.96 16 13 O -0.55 -12.42 14.65 5.25 0.08 -12.34 16 14 N -0.59 -11.98 3.33 -171.89 -0.57 -12.56 16 15 C 0.10 1.68 5.01 -3.06 -0.02 1.66 16 16 C -0.12 -2.27 6.13 -24.90 -0.15 -2.42 16 17 C 0.25 5.86 0.89 -89.62 -0.08 5.78 16 18 O -0.58 -14.68 13.18 -35.23 -0.46 -15.14 16 19 C -0.54 -13.56 8.25 -34.44 -0.28 -13.85 16 20 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16 21 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 22 N -0.89 -23.33 10.72 55.43 0.59 -22.73 16 23 Si 0.90 19.86 29.54 -169.99 -5.02 14.83 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 27 C 0.09 2.20 5.65 -2.53 -0.01 2.18 16 28 H 0.05 0.73 7.88 -51.93 -0.41 0.32 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.89 7.97 -51.93 -0.41 0.48 16 32 H 0.08 0.80 6.51 -51.93 -0.34 0.46 16 33 H 0.14 2.24 5.40 -51.93 -0.28 1.96 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.50 6.76 -51.93 -0.35 0.15 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.17 2.22 4.66 -52.48 -0.24 1.98 16 43 H 0.07 1.10 7.01 -51.93 -0.36 0.74 16 44 H 0.06 0.92 6.89 -51.93 -0.36 0.56 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.08 1.39 8.01 -51.93 -0.42 0.98 16 47 H 0.39 10.12 6.93 45.56 0.32 10.43 16 48 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 49 H 0.06 1.51 8.03 -51.93 -0.42 1.09 16 50 H 0.09 2.24 7.60 -51.93 -0.39 1.85 16 LS Contribution 393.56 15.07 5.93 5.93 Total: -1.00 -28.82 393.56 -8.27 -37.09 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -7.44 Total: 15.11 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.63 Total: -2.27 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.27 Total: -43.23 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.39 Total: -27.48 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.82 -8.27 -37.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.164 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds