Wall clock time and date at job start Tue Mar 31 2020 21:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47165 * 2 1 4 4 C 1.53002 * 109.46783 * 175.52399 * 3 2 1 5 5 C 1.52999 * 109.47039 * 294.24060 * 4 3 2 6 6 N 1.46495 * 109.47586 * 295.52449 * 3 2 1 7 7 N 1.28444 * 125.18890 * 305.64247 * 6 3 2 8 8 C 1.30868 * 110.92554 * 179.97438 * 7 6 3 9 9 C 1.50706 * 126.06724 * 180.02562 * 8 7 6 10 10 C 1.39667 * 107.86181 * 359.77230 * 8 7 6 11 11 C 1.36604 * 125.19421 * 125.61163 * 6 3 2 12 12 C 1.47169 * 126.87788 * 359.97438 * 11 6 3 13 13 O 1.21626 * 120.00303 * 6.35535 * 12 11 6 14 14 N 1.34776 * 119.99577 * 186.36416 * 12 11 6 15 15 C 1.47027 * 125.64906 * 354.88456 * 14 12 11 16 16 C 1.54318 * 107.26994 * 180.79805 * 15 14 12 17 17 C 1.55157 * 102.94350 * 22.19639 * 16 15 14 18 18 O 1.42900 * 111.00295 * 82.57188 * 17 16 15 19 19 C 1.50706 * 111.00139 * 206.38435 * 17 16 15 20 20 H 1.07995 * 120.00048 * 0.02562 * 19 17 16 21 21 C 1.37878 * 119.99589 * 179.97438 * 19 17 16 22 22 N 1.31513 * 120.00212 * 0.02562 * 21 19 17 23 23 Si 1.86795 * 119.99775 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47237 * 90.00035 * 23 21 19 25 25 H 1.48506 * 109.47400 * 210.00167 * 23 21 19 26 26 H 1.48499 * 109.47180 * 330.00292 * 23 21 19 27 27 C 1.47419 * 125.64851 * 174.58327 * 14 12 11 28 28 H 1.09004 * 109.47415 * 65.02373 * 1 2 3 29 29 H 1.08991 * 109.47427 * 185.02602 * 1 2 3 30 30 H 1.09003 * 109.46812 * 305.02694 * 1 2 3 31 31 H 1.09004 * 109.46378 * 240.00683 * 2 1 3 32 32 H 1.08992 * 109.46991 * 120.00661 * 2 1 3 33 33 H 1.09003 * 109.47198 * 55.52591 * 3 2 1 34 34 H 1.08995 * 109.47368 * 54.24396 * 4 3 2 35 35 H 1.09004 * 109.46726 * 174.24468 * 4 3 2 36 36 H 1.08997 * 109.47181 * 305.52645 * 5 4 3 37 37 H 1.09001 * 109.47228 * 65.53176 * 5 4 3 38 38 H 1.08999 * 109.47198 * 185.52843 * 5 4 3 39 39 H 1.09000 * 109.47231 * 89.97344 * 9 8 7 40 40 H 1.08998 * 109.47046 * 209.97282 * 9 8 7 41 41 H 1.09001 * 109.46994 * 329.97263 * 9 8 7 42 42 H 1.08005 * 127.32265 * 180.23835 * 10 8 7 43 43 H 1.08992 * 109.88554 * 300.21798 * 15 14 12 44 44 H 1.09002 * 109.87749 * 61.22745 * 15 14 12 45 45 H 1.09001 * 110.72058 * 140.56199 * 16 15 14 46 46 H 1.09005 * 110.72119 * 263.82950 * 16 15 14 47 47 H 0.96704 * 113.99263 * 179.97438 * 18 17 16 48 48 H 0.96999 * 120.00059 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.36683 * 274.96975 * 27 14 12 50 50 H 1.09004 * 110.36501 * 37.29576 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5659 1.4438 0.1126 5 6 3.9771 0.8865 1.4768 6 7 1.6418 2.1013 -1.2463 7 7 1.8912 1.6632 -2.4277 8 6 1.4075 2.4702 -3.3373 9 6 1.5045 2.2849 -4.8298 10 6 0.7803 3.5306 -2.6793 11 6 0.9479 3.2751 -1.3295 12 6 0.4688 4.0992 -0.2083 13 8 0.7802 3.8143 0.9324 14 7 -0.3153 5.1694 -0.4455 15 6 -0.6795 5.6875 -1.7724 16 6 -1.5695 6.9286 -1.5511 17 6 -1.1933 7.3742 -0.1133 18 8 -0.0017 8.1629 -0.1167 19 6 -2.3302 8.1210 0.5356 20 1 -3.2514 8.2785 -0.0056 21 6 -2.1945 8.6022 1.8205 22 7 -1.0728 8.4100 2.4797 23 14 -3.6038 9.5273 2.6251 24 1 -4.4803 8.5672 3.3428 25 1 -3.0598 10.5171 3.5893 26 1 -4.3917 10.2330 1.5828 27 6 -0.9548 6.0107 0.5823 28 1 -0.3634 0.4339 -0.9316 29 1 -0.3634 -1.0236 0.0900 30 1 -0.3633 0.5899 0.8416 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6127 1.9789 0.8472 34 1 3.9890 0.8222 -0.6764 35 1 3.9368 2.4637 0.0100 36 1 3.4754 1.4479 2.2649 37 1 3.6924 -0.1637 1.5411 38 1 5.0567 0.9781 1.5963 39 1 0.6432 1.7176 -5.1823 40 1 1.5212 3.2600 -5.3166 41 1 2.4194 1.7432 -5.0699 42 1 0.2739 4.3722 -3.1284 43 1 0.2198 5.9691 -2.3201 44 1 -1.2296 4.9284 -2.3285 45 1 -1.3285 7.7096 -2.2723 46 1 -2.6248 6.6617 -1.6085 47 1 0.2725 8.4648 0.7601 48 1 -0.9772 8.7489 3.3835 49 1 -1.9030 5.5732 0.8946 50 1 -0.2919 6.1328 1.4389 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592848310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:25 Heat of formation + Delta-G solvation = -34.814701 kcal Electronic energy + Delta-G solvation = -30745.566346 eV Core-core repulsion = 26773.436028 eV Total energy + Delta-G solvation = -3972.130318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.66624 -40.88816 -38.95755 -38.00779 -36.19225 -34.16397 -33.56886 -32.84757 -32.59639 -31.47140 -29.56799 -29.38276 -27.23169 -26.59926 -25.10666 -23.89429 -22.95303 -22.39628 -21.75202 -21.31247 -19.55571 -19.18380 -18.29249 -17.55474 -17.30278 -17.14845 -16.52289 -16.32688 -16.03267 -15.91388 -15.35750 -15.15716 -14.95126 -14.82774 -14.70378 -14.46040 -14.17779 -13.77229 -13.61136 -13.48096 -13.39154 -13.30429 -13.19922 -13.12890 -12.92063 -12.83389 -12.62184 -12.44065 -12.33401 -12.22631 -12.13016 -12.07982 -12.05951 -11.68483 -11.53260 -11.23471 -11.01609 -10.65827 -10.35328 -10.16713 -9.80856 -9.52948 -8.26882 -6.43905 0.20795 1.28516 1.42593 1.45061 1.54576 1.58985 2.07283 2.10048 2.38342 2.99445 3.30528 3.32995 3.68970 3.75193 3.76776 3.98802 4.03463 4.09809 4.13480 4.21183 4.26129 4.31566 4.33292 4.39165 4.50259 4.58842 4.63205 4.69315 4.72011 4.74675 4.85194 4.93651 4.94890 4.97171 4.99378 5.03780 5.05877 5.08915 5.12253 5.23169 5.24953 5.27991 5.37598 5.43960 5.60996 5.75367 5.84613 6.02335 6.46429 6.64944 6.93360 7.12807 7.29060 7.37891 8.78799 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.003412 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.405230 B = 8203.428003 C = 9201.375210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.127 3.873 4 C -0.121 4.121 5 C -0.145 4.145 6 N -0.250 5.250 7 N -0.281 5.281 8 C 0.011 3.989 9 C -0.060 4.060 10 C -0.191 4.191 11 C -0.053 4.053 12 C 0.587 3.413 13 O -0.587 6.587 14 N -0.594 5.594 15 C 0.100 3.900 16 C -0.113 4.113 17 C 0.233 3.767 18 O -0.590 6.590 19 C -0.555 4.555 20 H 0.073 0.927 21 C 0.026 3.974 22 N -0.919 5.919 23 Si 0.965 3.035 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.264 1.264 27 C 0.109 3.891 28 H 0.031 0.969 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.187 0.813 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.377 0.623 48 H 0.271 0.729 49 H 0.052 0.948 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 -14.923 -10.719 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.027 3.973 4 C -0.159 4.159 5 C -0.203 4.203 6 N -0.038 5.038 7 N -0.116 5.116 8 C -0.145 4.145 9 C -0.119 4.119 10 C -0.220 4.220 11 C -0.181 4.181 12 C 0.376 3.624 13 O -0.470 6.470 14 N -0.325 5.325 15 C -0.022 4.022 16 C -0.150 4.150 17 C 0.192 3.808 18 O -0.399 6.399 19 C -0.593 4.593 20 H 0.091 0.909 21 C -0.174 4.174 22 N -0.559 5.559 23 Si 0.790 3.210 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.188 1.188 27 C -0.014 4.014 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.204 0.796 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.228 0.772 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.515 -16.260 -10.320 20.033 hybrid contribution -0.989 1.727 1.745 2.647 sum 4.526 -14.533 -8.575 17.471 Atomic orbital electron populations 1.21721 0.95818 1.02663 1.00385 1.21887 0.96126 0.92912 1.04887 1.22349 0.97509 0.95665 0.81780 1.21766 0.92004 1.01409 1.00720 1.21765 1.02338 1.01926 0.94224 1.45933 1.37145 1.14665 1.06050 1.72977 1.22488 1.26193 0.89893 1.22667 1.00738 0.93052 0.98035 1.20197 1.03538 1.04201 0.83923 1.22942 1.05966 1.03028 0.90047 1.21266 1.07610 0.93646 0.95569 1.16996 0.78268 0.80135 0.86981 1.90664 1.59991 1.72014 1.24347 1.48385 1.46718 1.26925 1.10464 1.22571 0.99577 0.96500 0.83525 1.22689 0.99782 0.96080 0.96481 1.19857 0.83463 0.85342 0.92109 1.86063 1.45597 1.72342 1.35929 1.21846 1.01075 1.36580 0.99802 0.90882 1.25832 0.98316 0.95829 0.97448 1.69682 1.26833 1.46473 1.12925 0.85441 0.79056 0.78256 0.78205 1.20249 1.21067 1.18791 1.22962 0.94937 0.92365 0.91120 0.95003 0.89930 0.94032 0.89963 0.87335 0.87478 0.89955 0.93812 0.93265 0.90073 0.90710 0.89572 0.88764 0.90646 0.79557 0.90172 0.88389 0.89194 0.88831 0.77216 0.91997 0.92965 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.73 71.98 0.70 -2.89 16 2 C -0.12 -2.66 5.30 30.59 0.16 -2.50 16 3 C 0.13 3.62 2.38 44.99 0.11 3.73 16 4 C -0.12 -2.96 5.65 30.59 0.17 -2.79 16 5 C -0.14 -2.77 9.55 71.98 0.69 -2.08 16 6 N -0.25 -7.91 2.61 -314.29 -0.82 -8.74 16 7 N -0.28 -8.13 11.43 -47.49 -0.54 -8.68 16 8 C 0.01 0.29 7.22 43.05 0.31 0.60 16 9 C -0.06 -0.96 10.45 71.24 0.74 -0.21 16 10 C -0.19 -5.39 9.37 22.65 0.21 -5.17 16 11 C -0.05 -1.85 6.92 40.79 0.28 -1.57 16 12 C 0.59 24.71 7.82 86.59 0.68 25.39 16 13 O -0.59 -28.15 14.65 -4.11 -0.06 -28.21 16 14 N -0.59 -24.60 3.33 -815.98 -2.71 -27.31 16 15 C 0.10 3.25 5.01 86.73 0.43 3.68 16 16 C -0.11 -4.10 6.13 31.78 0.19 -3.91 16 17 C 0.23 11.06 0.89 -10.15 -0.01 11.05 16 18 O -0.59 -30.40 13.18 -148.98 -1.96 -32.37 16 19 C -0.55 -28.17 8.25 25.60 0.21 -27.96 16 20 H 0.07 3.55 7.76 -2.91 -0.02 3.53 16 21 C 0.03 1.35 5.29 84.66 0.45 1.80 16 22 N -0.92 -49.63 10.72 21.45 0.23 -49.40 16 23 Si 0.97 41.02 29.54 68.60 2.03 43.05 16 24 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 27 C 0.11 5.27 5.65 86.86 0.49 5.76 16 28 H 0.03 0.88 7.88 -2.39 -0.02 0.86 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.75 7.97 -2.39 -0.02 1.73 16 32 H 0.11 1.85 6.51 -2.39 -0.02 1.83 16 33 H 0.11 3.74 5.40 -2.39 -0.01 3.72 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.19 6.76 -2.39 -0.02 1.17 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.19 4.33 4.66 -2.91 -0.01 4.32 16 43 H 0.08 2.42 7.01 -2.39 -0.02 2.41 16 44 H 0.10 2.54 6.89 -2.39 -0.02 2.52 16 45 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.09 3.11 8.01 -2.38 -0.02 3.09 16 47 H 0.38 20.64 6.93 -74.05 -0.51 20.13 16 48 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 49 H 0.05 2.58 8.03 -2.39 -0.02 2.57 16 50 H 0.04 2.48 7.60 -2.38 -0.02 2.46 16 Total: -1.00 -65.56 393.56 2.41 -63.15 By element: Atomic # 1 Polarization: 45.15 SS G_CDS: 0.43 Total: 45.59 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.83 Total: 2.92 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -3.85 Total: -94.12 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -2.02 Total: -60.58 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -65.56 2.41 -63.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.332 kcal (2) G-P(sol) polarization free energy of solvation -65.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds