Wall clock time and date at job start Tue Mar 31 2020 18:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47061 * 2 1 4 4 C 1.50701 * 109.47237 * 179.97438 * 3 2 1 5 5 N 1.30618 * 125.42188 * 89.97131 * 4 3 2 6 6 C 1.33691 * 108.99639 * 180.02562 * 5 4 3 7 7 C 1.50697 * 126.27655 * 180.02562 * 6 5 4 8 8 C 1.36340 * 107.45270 * 0.02562 * 6 5 4 9 9 C 1.46718 * 126.64684 * 180.02562 * 8 6 5 10 10 O 1.21684 * 119.99803 * 359.97438 * 9 8 6 11 11 N 1.34776 * 120.00428 * 179.97438 * 9 8 6 12 12 C 1.46494 * 120.00407 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47391 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.69856 * 60.23086 * 13 12 11 15 15 C 1.53626 * 109.66362 * 180.82095 * 13 12 11 16 16 C 1.53043 * 109.23897 * 174.55046 * 15 13 12 17 17 C 1.53040 * 109.53703 * 298.51033 * 16 15 13 18 18 C 1.53192 * 109.31441 * 61.36637 * 17 16 15 19 19 N 1.46923 * 109.58478 * 299.87402 * 13 12 11 20 20 C 1.36938 * 120.63320 * 6.62239 * 19 13 12 21 21 H 1.08000 * 119.99836 * 328.53993 * 20 19 13 22 22 C 1.38807 * 119.99871 * 148.80906 * 20 19 13 23 23 N 1.31625 * 120.00229 * 345.62895 * 22 20 19 24 24 Si 1.86797 * 120.00108 * 165.62915 * 22 20 19 25 25 H 1.48501 * 109.46855 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47187 * 119.99873 * 24 22 20 27 27 H 1.48501 * 109.47542 * 240.00275 * 24 22 20 28 28 O 1.33662 * 125.42399 * 270.28855 * 4 3 2 29 29 H 1.09002 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47052 * 300.00160 * 1 2 3 31 31 H 1.09004 * 109.46981 * 60.00737 * 1 2 3 32 32 H 1.08999 * 109.47316 * 239.99416 * 2 1 3 33 33 H 1.09001 * 109.46674 * 119.99688 * 2 1 3 34 34 H 1.08999 * 109.47533 * 59.99548 * 3 2 1 35 35 H 1.09004 * 109.46622 * 299.99484 * 3 2 1 36 36 H 1.09002 * 109.47150 * 269.96038 * 7 6 5 37 37 H 1.09001 * 109.47298 * 29.95763 * 7 6 5 38 38 H 1.09004 * 109.47319 * 149.96037 * 7 6 5 39 39 H 0.96998 * 119.99965 * 0.02562 * 11 9 8 40 40 H 1.09004 * 109.46828 * 60.00161 * 12 11 9 41 41 H 1.09000 * 109.47503 * 300.00781 * 12 11 9 42 42 H 1.08993 * 109.63455 * 54.55810 * 15 13 12 43 43 H 1.08999 * 109.45901 * 294.43353 * 15 13 12 44 44 H 1.09004 * 109.45828 * 178.49046 * 16 15 13 45 45 H 1.08999 * 109.44690 * 58.52534 * 16 15 13 46 46 H 1.09002 * 109.49813 * 301.41074 * 17 16 15 47 47 H 1.09004 * 109.52058 * 181.33463 * 17 16 15 48 48 H 1.08998 * 109.58586 * 185.58023 * 18 17 16 49 49 H 1.08998 * 109.70151 * 65.22297 * 18 17 16 50 50 H 0.97000 * 119.99996 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3045 1.4419 -1.0635 6 6 5.5867 1.4416 -0.6849 7 6 6.7859 1.4414 -1.5975 8 6 5.6106 1.4415 0.6783 9 6 6.8029 1.4418 1.5333 10 8 7.9114 1.4416 1.0314 11 7 6.6704 1.4422 2.8745 12 6 7.8609 1.4419 3.7282 13 6 7.4348 1.4418 5.1977 14 1 6.8430 0.5511 5.4086 15 6 8.6802 1.4622 6.0971 16 6 8.2451 1.5993 7.5579 17 6 7.4935 2.9190 7.7464 18 6 6.2395 2.9182 6.8665 19 7 6.6357 2.6423 5.4788 20 6 6.2625 3.4850 4.4660 21 1 6.9005 3.6082 3.6034 22 6 5.0669 4.1850 4.5508 23 7 4.1643 3.8402 5.4446 24 14 4.7388 5.6164 3.3963 25 1 5.9022 5.7994 2.4917 26 1 3.5248 5.3333 2.5894 27 1 4.5285 6.8541 4.1895 28 8 4.3213 1.4372 1.0901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 7.0752 0.4136 -1.8171 37 1 6.5359 1.9546 -2.5261 38 1 7.6139 1.9556 -1.1097 39 1 5.7868 1.4420 3.2746 40 1 8.4560 2.3316 3.5221 41 1 8.4553 0.5517 3.5226 42 1 9.3142 2.3062 5.8256 43 1 9.2361 0.5335 5.9686 44 1 9.1248 1.5871 8.2015 45 1 7.5910 0.7680 7.8213 46 1 8.1388 3.7493 7.4595 47 1 7.2044 3.0274 8.7918 48 1 5.7542 3.8926 6.9211 49 1 5.5502 2.1469 7.2100 50 1 3.3289 4.3297 5.5040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024760010.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:35 Heat of formation + Delta-G solvation = -14.492301 kcal Electronic energy + Delta-G solvation = -30521.308138 eV Core-core repulsion = 26550.059065 eV Total energy + Delta-G solvation = -3971.249073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -43.20713 -39.20627 -37.72294 -35.47951 -35.15397 -34.16057 -33.10563 -31.52922 -30.77894 -29.95019 -28.40346 -27.37603 -25.81860 -24.64616 -22.66662 -22.19322 -21.58722 -21.16061 -20.66607 -20.07271 -19.17938 -17.80932 -16.71497 -16.39778 -15.77308 -15.60994 -15.57320 -15.12599 -14.38036 -14.33561 -14.05109 -13.80143 -13.60639 -13.41696 -13.41034 -13.08824 -12.89306 -12.84348 -12.47154 -12.39516 -12.17495 -12.08609 -11.82611 -11.77161 -11.51955 -11.25727 -11.00621 -10.93577 -10.82081 -10.76186 -10.64689 -10.59472 -10.33396 -10.18180 -10.03790 -9.78282 -9.54296 -9.37510 -8.76536 -8.57123 -8.25520 -6.70776 -5.89393 -3.35572 1.10062 2.57738 2.65683 3.27814 3.37320 3.41461 3.48883 3.68268 4.01617 4.39189 4.77326 4.78578 4.87739 4.99887 5.16549 5.22353 5.27726 5.34977 5.45498 5.47440 5.58325 5.59741 5.63251 5.68068 5.74439 5.80724 5.84456 5.91670 5.94916 5.99365 6.06118 6.08171 6.08731 6.12148 6.23249 6.32455 6.35808 6.48609 6.55119 6.66758 6.69519 6.80929 6.90344 7.01416 7.33887 7.60704 7.73393 7.74335 8.09573 8.35506 8.59637 9.11262 9.72656 10.30670 11.17218 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.004171 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.690054 B = 6710.956693 C = 7595.410622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.028 4.028 4 C 0.213 3.787 5 N -0.490 5.490 6 C 0.064 3.936 7 C -0.075 4.075 8 C -0.099 4.099 9 C 0.598 3.402 10 O -0.538 6.538 11 N -0.677 5.677 12 C 0.133 3.867 13 C 0.160 3.840 14 H 0.033 0.967 15 C -0.126 4.126 16 C -0.107 4.107 17 C -0.144 4.144 18 C 0.174 3.826 19 N -0.589 5.589 20 C -0.253 4.253 21 H 0.069 0.931 22 C 0.012 3.988 23 N -0.896 5.896 24 Si 0.888 3.112 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.287 1.287 28 O -0.175 6.175 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.420 0.580 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.046 0.954 48 H 0.084 0.916 49 H 0.018 0.982 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 -7.369 -5.821 9.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.066 4.066 4 C 0.008 3.992 5 N -0.221 5.221 6 C -0.061 4.061 7 C -0.132 4.132 8 C -0.155 4.155 9 C 0.383 3.617 10 O -0.419 6.419 11 N -0.326 5.326 12 C 0.010 3.990 13 C 0.053 3.947 14 H 0.050 0.950 15 C -0.166 4.166 16 C -0.145 4.145 17 C -0.183 4.183 18 C 0.048 3.952 19 N -0.313 5.313 20 C -0.383 4.383 21 H 0.087 0.913 22 C -0.187 4.187 23 N -0.539 5.539 24 Si 0.717 3.283 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.213 1.213 28 O -0.061 6.061 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.259 0.741 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.037 0.963 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.288 -7.289 -6.636 9.941 hybrid contribution -0.522 0.967 0.435 1.182 sum -1.810 -6.322 -6.201 9.038 Atomic orbital electron populations 1.21750 0.94590 1.02171 1.02286 1.21529 0.96531 0.94611 1.03225 1.20265 0.81011 0.99669 1.05631 1.26402 0.96330 0.97665 0.78820 1.70266 1.01570 1.20207 1.30013 1.21964 0.93342 0.99425 0.91335 1.20312 0.92449 1.03251 0.97192 1.23102 0.82620 1.14643 0.95133 1.16322 0.85127 0.78106 0.82166 1.90783 1.23611 1.53246 1.74302 1.45977 1.12156 1.70182 1.04312 1.21394 0.86846 1.01139 0.89657 1.20830 0.92019 0.91204 0.90695 0.94951 1.22007 0.98137 1.00584 0.95903 1.21361 0.98901 0.98445 0.95796 1.22190 1.00327 0.96574 0.99228 1.20749 0.91033 1.01322 0.82063 1.44096 1.61207 1.22610 1.03389 1.19197 1.00383 1.18475 1.00220 0.91349 1.25035 0.95249 1.00174 0.98272 1.70014 1.06950 1.40241 1.36726 0.86438 0.78026 0.83103 0.80685 1.20224 1.21630 1.21346 1.84540 1.16136 1.68534 1.36854 0.92226 0.92163 0.92382 0.91118 0.91185 0.88312 0.87546 0.90456 0.90941 0.88667 0.74115 0.91086 0.92135 0.91991 0.92992 0.93663 0.92874 0.92804 0.93513 0.89794 0.96347 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 3 C -0.03 -0.33 5.84 -27.88 -0.16 -0.49 16 4 C 0.21 3.47 7.57 -12.79 -0.10 3.37 16 5 N -0.49 -8.38 11.26 -7.07 -0.08 -8.46 16 6 C 0.06 1.12 7.16 -82.47 -0.59 0.53 16 7 C -0.07 -1.10 9.87 36.00 0.36 -0.74 16 8 C -0.10 -1.91 7.18 -36.84 -0.26 -2.17 16 9 C 0.60 11.95 7.79 -12.84 -0.10 11.85 16 10 O -0.54 -11.18 14.79 5.20 0.08 -11.10 16 11 N -0.68 -13.43 3.84 -61.61 -0.24 -13.67 16 12 C 0.13 2.48 4.44 -4.04 -0.02 2.46 16 13 C 0.16 3.04 3.03 -67.37 -0.20 2.83 16 14 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 15 C -0.13 -2.07 5.40 -26.38 -0.14 -2.21 16 16 C -0.11 -1.72 5.88 -26.69 -0.16 -1.88 16 17 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 18 C 0.17 3.87 5.27 -3.71 -0.02 3.85 16 19 N -0.59 -13.34 2.97 -164.52 -0.49 -13.83 16 20 C -0.25 -6.33 6.95 -15.06 -0.10 -6.43 16 21 H 0.07 1.77 5.88 -52.49 -0.31 1.46 16 22 C 0.01 0.32 4.96 -17.43 -0.09 0.24 16 23 N -0.90 -24.16 11.24 55.49 0.62 -23.54 16 24 Si 0.89 21.43 29.58 -169.99 -5.03 16.40 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 O -0.18 -3.29 10.57 4.42 0.05 -3.25 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 1.49 6.47 -51.93 -0.34 1.16 16 39 H 0.42 8.94 7.18 -40.82 -0.29 8.65 16 40 H 0.07 1.43 7.43 -51.93 -0.39 1.04 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 2.12 6.20 -51.93 -0.32 1.80 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -28.86 396.82 -9.04 -37.90 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.39 Total: 7.34 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.54 Total: 6.22 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.18 Total: -59.49 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.12 Total: -14.35 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.86 -9.04 -37.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024760010.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.405 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds