Wall clock time and date at job start Tue Mar 31 2020 19:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 119.99859 * 2 1 4 4 H 1.08004 * 119.99529 * 152.71448 * 3 2 1 5 5 C 1.38809 * 120.00311 * 332.71465 * 3 2 1 6 6 N 1.31621 * 119.99881 * 356.67927 * 5 3 2 7 7 Si 1.86796 * 119.99874 * 176.67908 * 5 3 2 8 8 H 1.48501 * 109.47368 * 90.00363 * 7 5 3 9 9 H 1.48507 * 109.47287 * 209.99997 * 7 5 3 10 10 H 1.48502 * 109.47428 * 329.99898 * 7 5 3 11 11 C 1.46505 * 119.99880 * 179.72770 * 2 1 3 12 12 H 1.08995 * 109.49499 * 180.33740 * 11 2 1 13 13 C 1.53039 * 109.49603 * 60.27405 * 11 2 1 14 14 C 1.53037 * 109.53752 * 178.68478 * 13 11 2 15 15 C 1.53194 * 109.31500 * 61.36541 * 14 13 11 16 16 N 1.46928 * 108.77307 * 305.36576 * 15 14 13 17 17 C 1.34778 * 120.63435 * 233.60853 * 16 15 14 18 18 O 1.21608 * 120.00437 * 172.74543 * 17 16 15 19 19 C 1.47427 * 119.99574 * 352.74377 * 17 16 15 20 20 C 1.36089 * 126.44742 * 172.06913 * 19 17 16 21 21 O 1.34255 * 106.95042 * 179.90127 * 20 19 17 22 22 C 1.34054 * 108.22357 * 0.36410 * 21 20 19 23 23 C 1.50698 * 125.37702 * 179.80777 * 22 21 20 24 24 C 1.52996 * 109.47338 * 239.95787 * 23 22 21 25 25 C 1.53002 * 109.47067 * 359.95745 * 23 22 21 26 26 C 1.53004 * 109.47329 * 119.95458 * 23 22 21 27 27 N 1.29932 * 109.24786 * 359.76747 * 22 21 20 28 28 C 1.46929 * 118.73910 * 53.60902 * 16 15 14 29 29 H 1.08996 * 109.47106 * 91.30527 * 1 2 3 30 30 H 1.08998 * 109.47288 * 211.30639 * 1 2 3 31 31 H 1.09003 * 109.46618 * 331.30523 * 1 2 3 32 32 H 0.96997 * 119.99338 * 179.97438 * 6 5 3 33 33 H 1.09004 * 109.46008 * 298.70432 * 13 11 2 34 34 H 1.09002 * 109.46236 * 58.66147 * 13 11 2 35 35 H 1.08997 * 109.50325 * 181.31616 * 14 13 11 36 36 H 1.09009 * 109.49868 * 301.41497 * 14 13 11 37 37 H 1.09000 * 109.58571 * 65.15297 * 15 14 13 38 38 H 1.09000 * 109.58748 * 185.58029 * 15 14 13 39 39 H 1.08003 * 126.52613 * 0.03324 * 20 19 17 40 40 H 1.09000 * 109.47020 * 59.99503 * 24 23 22 41 41 H 1.08994 * 109.47806 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.47280 * 300.00380 * 24 23 22 43 43 H 1.08999 * 109.47322 * 60.00070 * 25 23 22 44 44 H 1.09007 * 109.47090 * 180.02562 * 25 23 22 45 45 H 1.09007 * 109.47087 * 299.99894 * 25 23 22 46 46 H 1.09000 * 109.46828 * 60.00373 * 26 23 22 47 47 H 1.08999 * 109.46701 * 179.97438 * 26 23 22 48 48 H 1.08999 * 109.47210 * 300.00022 * 26 23 22 49 49 H 1.09000 * 109.58632 * 186.60295 * 28 16 15 50 50 H 1.08997 * 109.58630 * 66.17609 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1396 1.2379 0.4288 5 6 1.5715 2.3212 -0.5511 6 7 0.3929 2.2437 -1.1319 7 14 2.4661 3.9589 -0.4683 8 1 3.3244 4.1154 -1.6701 9 1 1.4741 5.0631 -0.4214 10 1 3.3110 4.0004 0.7522 11 6 2.1975 -1.2688 0.0060 12 1 3.2692 -1.0701 0.0111 13 6 1.8334 -2.0747 -1.2430 14 6 2.6227 -3.3858 -1.2542 15 6 2.2497 -4.2124 -0.0196 16 7 2.4604 -3.3914 1.1805 17 6 3.2270 -3.8406 2.1940 18 8 3.5022 -3.1036 3.1213 19 6 3.7320 -5.2257 2.1783 20 6 4.6304 -5.7685 3.0445 21 8 4.8078 -7.0468 2.6743 22 6 4.0417 -7.2822 1.5997 23 6 3.9484 -8.5949 0.8655 24 6 4.3808 -8.3978 -0.5888 25 6 4.8651 -9.6204 1.5356 26 6 2.5045 -9.0995 0.9044 27 7 3.3918 -6.2001 1.2916 28 6 1.8196 -2.0714 1.2549 29 1 -0.3633 -0.0234 -1.0274 30 1 -0.3634 -0.8780 0.5340 31 1 -0.3633 0.9015 0.4935 32 1 -0.0112 3.0371 -1.5166 33 1 0.7656 -2.2938 -1.2353 34 1 2.0786 -1.4955 -2.1332 35 1 2.3805 -3.9486 -2.1556 36 1 3.6906 -3.1677 -1.2369 37 1 1.2023 -4.5082 -0.0807 38 1 2.8800 -5.1003 0.0298 39 1 5.1080 -5.2671 3.8733 40 1 5.4094 -8.0383 -0.6164 41 1 4.3128 -9.3471 -1.1200 42 1 3.7277 -7.6672 -1.0662 43 1 4.5571 -9.7609 2.5717 44 1 4.7979 -10.5698 1.0043 45 1 5.8938 -9.2609 1.5079 46 1 1.8514 -8.3690 0.4270 47 1 2.4369 -10.0488 0.3729 48 1 2.1964 -9.2400 1.9405 49 1 2.1661 -1.5466 2.1453 50 1 0.7372 -2.1926 1.2977 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027411981.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:28 Heat of formation + Delta-G solvation = 13.447769 kcal Electronic energy + Delta-G solvation = -30177.795110 eV Core-core repulsion = 26207.757609 eV Total energy + Delta-G solvation = -3970.037501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.69567 -39.75011 -37.49534 -37.24961 -35.30622 -34.70408 -32.17829 -31.23176 -30.09451 -28.69821 -27.80419 -27.73101 -25.97615 -25.58257 -23.84216 -23.54795 -22.82689 -21.49280 -20.63821 -19.29880 -18.63568 -17.49182 -17.04873 -16.75490 -16.58586 -15.80537 -15.44973 -15.01705 -14.67470 -14.57806 -14.42284 -14.01735 -13.90020 -13.68654 -13.39454 -13.23563 -12.79058 -12.71035 -12.62761 -12.54313 -12.26580 -12.12221 -12.07404 -11.94510 -11.66301 -11.46744 -11.33653 -11.21560 -10.87816 -10.81483 -10.75751 -10.39321 -10.20916 -10.13813 -10.09738 -9.88496 -9.75901 -9.50573 -9.19574 -8.52493 -8.25636 -6.64771 -5.69933 -3.18495 0.99076 1.84790 2.31040 3.11340 3.34124 3.41234 3.47202 3.49707 3.56807 4.28833 4.38794 4.41812 4.52859 4.67701 4.74598 5.12502 5.17428 5.17994 5.23461 5.31365 5.37625 5.39056 5.42271 5.44779 5.47520 5.50218 5.55591 5.56723 5.69961 5.74436 5.83122 5.83974 5.86744 5.95121 6.12794 6.24105 6.31624 6.39155 6.51840 6.60088 6.78292 6.90525 7.03036 7.09094 7.28708 7.46903 7.69372 7.78327 7.86469 8.30779 8.48404 9.29394 9.90012 10.40864 11.35858 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.002637 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.516059 B =10613.804121 C =11129.092893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.593 5.593 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.909 5.909 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.132 4.132 14 C -0.131 4.131 15 C 0.084 3.916 16 N -0.584 5.584 17 C 0.593 3.407 18 O -0.542 6.542 19 C -0.059 4.059 20 C 0.004 3.996 21 O -0.194 6.194 22 C 0.202 3.798 23 C 0.032 3.968 24 C -0.141 4.141 25 C -0.148 4.148 26 C -0.140 4.140 27 N -0.450 5.450 28 C 0.095 3.905 29 H 0.021 0.979 30 H -0.007 1.007 31 H 0.055 0.945 32 H 0.252 0.748 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.129 0.871 39 H 0.230 0.770 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.089 0.911 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.830 -26.829 2.825 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.315 5.315 3 C -0.383 4.383 4 H 0.084 0.916 5 C -0.194 4.194 6 N -0.554 5.554 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.061 3.939 12 H 0.082 0.918 13 C -0.171 4.171 14 C -0.170 4.170 15 C -0.039 4.039 16 N -0.315 5.315 17 C 0.380 3.620 18 O -0.420 6.420 19 C -0.179 4.179 20 C -0.069 4.069 21 O -0.079 6.079 22 C -0.006 4.006 23 C 0.030 3.970 24 C -0.199 4.199 25 C -0.205 4.205 26 C -0.198 4.198 27 N -0.180 5.180 28 C -0.028 4.028 29 H 0.039 0.961 30 H 0.011 0.989 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.146 0.854 39 H 0.246 0.754 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.108 0.892 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.419 -26.199 2.744 27.113 hybrid contribution 0.746 1.113 0.473 1.421 sum 7.166 -25.086 3.217 26.287 Atomic orbital electron populations 1.20798 0.82656 0.96515 0.98152 1.43850 1.01802 0.99964 1.85892 1.19227 1.00597 0.86485 1.31989 0.91569 1.25138 0.97338 0.98819 0.98073 1.70046 1.16206 1.28104 1.41043 0.86239 0.78825 0.83533 0.77851 1.21426 1.21653 1.20475 1.20576 0.96390 0.86251 0.90668 0.91776 1.22106 0.99444 0.94854 1.00730 1.21936 1.00638 0.97313 0.97092 1.22553 1.02664 0.95327 0.83332 1.47971 1.47525 1.18773 1.17260 1.16829 0.78692 0.83735 0.82764 1.90817 1.58867 1.56259 1.36037 1.21917 1.02802 0.96237 0.96910 1.25268 0.99552 0.81021 1.01073 1.84377 1.54995 1.28580 1.39986 1.26441 0.90252 0.97497 0.86404 1.19180 0.98456 0.85103 0.94236 1.21926 1.02203 1.03213 0.92554 1.21928 0.99281 0.98248 1.01051 1.21919 0.93108 1.01910 1.02870 1.70614 1.23887 0.98777 1.24763 1.22480 0.96841 0.81237 1.02239 0.96082 0.98861 0.92662 0.93765 0.92552 0.91682 0.91496 0.92251 0.92143 0.85435 0.75377 0.92079 0.90818 0.90874 0.91777 0.90877 0.91744 0.90896 0.90853 0.92169 0.89228 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 8.07 59.85 0.48 4.57 16 2 N -0.59 -15.22 2.81 -173.34 -0.49 -15.71 16 3 C -0.25 -7.14 9.55 -15.06 -0.14 -7.29 16 4 H 0.07 1.86 7.82 -52.48 -0.41 1.45 16 5 C 0.00 0.13 5.24 -17.43 -0.09 0.03 16 6 N -0.91 -26.75 10.53 55.49 0.58 -26.16 16 7 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 C 0.17 3.67 2.75 -67.81 -0.19 3.48 16 12 H 0.06 1.47 7.89 -51.93 -0.41 1.06 16 13 C -0.13 -2.47 5.15 -26.69 -0.14 -2.61 16 14 C -0.13 -1.96 6.08 -26.61 -0.16 -2.12 16 15 C 0.08 1.22 6.09 -3.71 -0.02 1.20 16 16 N -0.58 -10.07 2.97 -174.03 -0.52 -10.59 16 17 C 0.59 10.28 7.67 -12.52 -0.10 10.19 16 18 O -0.54 -10.87 16.33 5.27 0.09 -10.79 16 19 C -0.06 -0.82 6.66 -83.02 -0.55 -1.37 16 20 C 0.00 0.05 11.95 29.96 0.36 0.41 16 21 O -0.19 -1.99 10.11 6.51 0.07 -1.92 16 22 C 0.20 2.04 6.44 -13.08 -0.08 1.95 16 23 C 0.03 0.21 0.99 -155.66 -0.15 0.06 16 24 C -0.14 -0.85 8.45 37.16 0.31 -0.53 16 25 C -0.15 -0.76 8.01 37.16 0.30 -0.46 16 26 C -0.14 -0.84 8.46 37.16 0.31 -0.53 16 27 N -0.45 -5.53 7.85 -7.65 -0.06 -5.59 16 28 C 0.10 1.88 5.79 -3.71 -0.02 1.86 16 29 H 0.02 0.56 7.67 -51.93 -0.40 0.16 16 30 H -0.01 -0.15 6.32 -51.93 -0.33 -0.48 16 31 H 0.05 1.51 6.92 -51.93 -0.36 1.15 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.06 1.06 7.72 -51.93 -0.40 0.66 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.13 1.73 4.15 -58.67 -0.24 1.49 16 39 H 0.23 1.95 8.06 -52.48 -0.42 1.53 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.09 1.95 7.00 -51.93 -0.36 1.59 16 50 H 0.07 1.29 6.46 -51.93 -0.34 0.95 16 LS Contribution 392.99 15.07 5.92 5.92 Total: -1.00 -32.69 392.99 -7.62 -40.31 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.30 Total: -1.61 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 0.11 Total: 8.83 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.48 Total: -58.05 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.15 Total: -12.71 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.69 -7.62 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027411981.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.754 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds