Wall clock time and date at job start Tue Mar 31 2020 20:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.47128 * 2 1 4 4 C 1.32993 * 120.00088 * 125.54229 * 3 2 1 5 5 C 1.50705 * 120.00071 * 185.36081 * 4 3 2 6 6 C 1.47101 * 120.00231 * 5.36647 * 4 3 2 7 7 O 1.21611 * 120.00159 * 255.35127 * 6 4 3 8 8 N 1.34777 * 119.99878 * 75.34486 * 6 4 3 9 9 C 1.47743 * 134.86488 * 5.00939 * 8 6 4 10 10 C 1.54482 * 85.89814 * 154.39412 * 9 8 6 11 11 H 1.08992 * 114.50002 * 139.49940 * 10 9 8 12 12 C 1.53115 * 111.18148 * 270.38776 * 10 9 8 13 13 C 1.53054 * 109.00446 * 140.41609 * 12 10 9 14 14 N 1.46483 * 108.74073 * 297.16867 * 13 12 10 15 15 C 1.46898 * 111.00219 * 191.09878 * 14 13 12 16 16 C 1.50695 * 109.47182 * 297.83992 * 15 14 13 17 17 O 1.21297 * 119.99879 * 4.60740 * 16 15 14 18 18 N 1.34781 * 120.00462 * 184.60539 * 16 15 14 19 19 C 1.37089 * 120.00205 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00589 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99721 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99680 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00068 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46968 * 90.00444 * 23 21 19 25 25 H 1.48500 * 109.46977 * 210.00005 * 23 21 19 26 26 H 1.48495 * 109.47378 * 330.00401 * 23 21 19 27 27 C 1.45464 * 112.85427 * 65.76537 * 14 13 12 28 28 C 1.46981 * 134.86466 * 185.00079 * 8 6 4 29 29 H 1.09007 * 111.33862 * 93.57899 * 28 8 6 30 30 H 1.09007 * 109.47347 * 60.00449 * 1 2 3 31 31 H 1.09001 * 109.47512 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47688 * 299.99854 * 1 2 3 33 33 H 1.09002 * 109.47354 * 239.99768 * 2 1 3 34 34 H 1.09000 * 109.46801 * 119.99905 * 2 1 3 35 35 H 1.08003 * 119.99792 * 305.54575 * 3 2 1 36 36 H 1.08997 * 109.47341 * 275.01589 * 5 4 3 37 37 H 1.09003 * 109.46931 * 35.02163 * 5 4 3 38 38 H 1.09003 * 109.46574 * 155.01189 * 5 4 3 39 39 H 1.08997 * 113.80795 * 40.14671 * 9 8 6 40 40 H 1.09003 * 113.80310 * 268.63587 * 9 8 6 41 41 H 1.09003 * 109.54827 * 260.27439 * 12 10 9 42 42 H 1.09002 * 109.54961 * 20.55427 * 12 10 9 43 43 H 1.09003 * 109.59400 * 177.39588 * 13 12 10 44 44 H 1.08996 * 109.71523 * 57.01586 * 13 12 10 45 45 H 1.08995 * 109.47146 * 57.84063 * 15 14 13 46 46 H 1.08999 * 109.47443 * 177.84084 * 15 14 13 47 47 H 0.97002 * 119.99425 * 359.97438 * 18 16 15 48 48 H 0.97004 * 120.00096 * 179.97438 * 22 21 19 49 49 H 1.08995 * 108.50109 * 189.96502 * 27 14 13 50 50 H 1.09000 * 108.50350 * 72.50738 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8852 1.8246 0.9372 5 6 3.2939 3.2733 1.0104 6 6 3.4297 0.8571 1.9022 7 8 3.0155 0.8398 3.0455 8 7 4.3877 -0.0102 1.5194 9 6 5.1749 -0.2160 0.2862 10 6 6.2400 -0.8544 1.2051 11 1 6.7156 -1.7452 0.7948 12 6 7.2282 0.1960 1.7196 13 6 7.5547 -0.1025 3.1848 14 7 6.3267 0.0165 3.9744 15 6 6.6223 0.0009 5.4132 16 6 7.2557 -1.3158 5.7817 17 8 7.5191 -2.1250 4.9173 18 7 7.5296 -1.5945 7.0716 19 6 8.1063 -2.7922 7.4067 20 1 8.3409 -3.5127 6.6372 21 6 8.3881 -3.0795 8.7367 22 7 8.9405 -4.2279 9.0579 23 14 7.9818 -1.8336 10.0678 24 1 6.6039 -2.0738 10.5666 25 1 8.9456 -1.9749 11.1887 26 1 8.0730 -0.4619 9.5065 27 6 5.3366 -0.9936 3.6347 28 6 5.0785 -1.1399 2.1572 29 1 4.5874 -2.0857 1.9280 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 1.6996 2.1111 -0.7611 36 1 4.1233 3.4519 0.3260 37 1 2.4497 3.9035 0.7306 38 1 3.6042 3.5122 2.0276 39 1 5.5006 0.7101 -0.1875 40 1 4.7206 -0.9171 -0.4139 41 1 8.1423 0.1579 1.1271 42 1 6.7814 1.1870 1.6400 43 1 8.2932 0.6125 3.5477 44 1 7.9504 -1.1141 3.2747 45 1 7.3083 0.8135 5.6520 46 1 5.6974 0.1291 5.9756 47 1 7.3193 -0.9472 7.7628 48 1 9.1377 -4.4284 9.9863 49 1 4.3980 -0.7368 4.1259 50 1 5.6748 -1.9540 4.0235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221361821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:03 Heat of formation + Delta-G solvation = -9.359163 kcal Electronic energy + Delta-G solvation = -30296.803422 eV Core-core repulsion = 26325.776939 eV Total energy + Delta-G solvation = -3971.026483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11851 -39.09788 -38.20618 -35.85157 -35.76170 -33.85102 -32.45505 -31.92030 -31.66138 -29.66242 -28.49648 -27.17001 -25.92186 -24.15880 -23.84314 -22.83514 -21.94303 -21.48614 -19.45088 -19.20359 -18.38644 -17.49541 -16.73642 -16.22543 -15.96589 -15.76238 -15.48191 -15.12514 -14.74690 -14.28515 -14.20342 -14.04154 -13.81317 -13.60778 -13.46596 -13.18021 -13.04942 -12.96459 -12.83738 -12.59133 -12.38867 -12.23708 -12.17539 -12.07210 -11.72902 -11.46174 -11.33896 -11.26275 -11.23936 -11.11219 -10.76851 -10.60210 -10.51612 -10.18542 -10.02284 -9.56772 -9.49345 -9.18026 -9.09513 -8.58361 -8.19670 -7.37635 -6.34907 -3.85749 1.54514 2.75268 2.92443 3.02573 3.07272 3.14920 3.68097 4.08363 4.14034 4.28955 4.42205 4.52742 4.69811 4.77658 4.79028 4.96142 5.02393 5.16649 5.16839 5.19880 5.23154 5.28407 5.35025 5.38256 5.44779 5.47407 5.57048 5.63383 5.69217 5.72615 5.75159 5.83542 5.84591 5.89464 5.91196 5.98262 6.01228 6.15641 6.17582 6.24689 6.35381 6.39435 6.43739 6.71854 7.37315 7.54583 7.58361 7.80870 8.11748 8.26947 8.55011 8.91042 9.39469 9.78044 10.77936 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.002750 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.959857 B =10180.653754 C =10510.927585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.122 4.122 4 C -0.153 4.153 5 C -0.104 4.104 6 C 0.582 3.418 7 O -0.531 6.531 8 N -0.627 5.627 9 C 0.102 3.898 10 C -0.114 4.114 11 H 0.096 0.904 12 C -0.092 4.092 13 C 0.041 3.959 14 N -0.510 5.510 15 C 0.044 3.956 16 C 0.417 3.583 17 O -0.577 6.577 18 N -0.584 5.584 19 C -0.306 4.306 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.268 1.268 27 C 0.043 3.957 28 C 0.152 3.848 29 H 0.087 0.913 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.371 0.629 48 H 0.274 0.726 49 H 0.083 0.917 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.719 12.964 -20.238 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.141 4.141 4 C -0.156 4.156 5 C -0.161 4.161 6 C 0.372 3.628 7 O -0.408 6.408 8 N -0.363 5.363 9 C -0.021 4.021 10 C -0.133 4.133 11 H 0.114 0.886 12 C -0.130 4.130 13 C -0.087 4.087 14 N -0.233 5.233 15 C -0.087 4.087 16 C 0.203 3.797 17 O -0.463 6.463 18 N -0.223 5.223 19 C -0.435 4.435 20 H 0.136 0.864 21 C -0.161 4.161 22 N -0.519 5.519 23 Si 0.706 3.294 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.085 4.085 28 C 0.049 3.951 29 H 0.105 0.895 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.140 0.860 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.106 0.894 47 H 0.204 0.796 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.062 12.848 -20.065 26.269 hybrid contribution 0.022 0.081 1.384 1.387 sum -11.040 12.929 -18.681 25.259 Atomic orbital electron populations 1.21674 0.94587 1.01926 1.02026 1.20717 0.96605 0.94028 1.02633 1.23277 0.96848 0.97669 0.96290 1.21589 1.00764 0.96490 0.96757 1.20654 1.01578 0.90642 1.03210 1.17928 0.77384 0.80117 0.87371 1.90812 1.59161 1.71295 1.19486 1.49959 1.37878 1.31843 1.16592 1.23455 0.89583 1.00187 0.88846 1.22983 0.95013 0.99592 0.95692 0.88581 1.21395 0.97593 0.97702 0.96276 1.22172 0.91454 1.03149 0.91880 1.61208 1.11053 1.48272 1.02771 1.22045 1.01093 0.95864 0.89742 1.21106 0.85124 0.90292 0.83194 1.90445 1.57694 1.50443 1.47673 1.42422 1.55427 1.17614 1.06799 1.19440 1.36078 0.93417 0.94605 0.86367 1.25073 0.97103 0.96626 0.97328 1.69627 1.41444 1.21845 1.19000 0.86668 0.79289 0.81128 0.82343 1.19544 1.20146 1.19361 1.21402 0.96688 0.96529 0.93880 1.22039 0.89852 0.88828 0.94363 0.89511 0.92573 0.92372 0.92434 0.90831 0.91384 0.86018 0.91207 0.91264 0.91102 0.90139 0.90099 0.91385 0.91507 0.91663 0.90260 0.89146 0.89382 0.79578 0.91575 0.89922 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.89 37.16 0.37 -0.77 16 2 C -0.10 -0.91 6.18 -27.89 -0.17 -1.08 16 3 C -0.12 -1.07 9.22 -36.13 -0.33 -1.41 16 4 C -0.15 -1.67 5.51 -102.84 -0.57 -2.24 16 5 C -0.10 -0.93 10.02 36.01 0.36 -0.57 16 6 C 0.58 8.33 5.42 -12.66 -0.07 8.26 16 7 O -0.53 -9.90 16.27 5.27 0.09 -9.81 16 8 N -0.63 -7.83 3.31 -174.60 -0.58 -8.41 16 9 C 0.10 0.92 7.95 -2.88 -0.02 0.89 16 10 C -0.11 -1.25 4.44 -89.90 -0.40 -1.65 16 11 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 12 C -0.09 -1.10 5.72 -26.64 -0.15 -1.25 16 13 C 0.04 0.64 4.92 -4.02 -0.02 0.62 16 14 N -0.51 -8.64 4.75 -239.07 -1.14 -9.77 16 15 C 0.04 0.79 5.79 -4.98 -0.03 0.76 16 16 C 0.42 9.30 7.06 -10.99 -0.08 9.23 16 17 O -0.58 -14.46 11.47 5.54 0.06 -14.40 16 18 N -0.58 -13.96 5.09 -10.96 -0.06 -14.01 16 19 C -0.31 -8.62 10.16 -14.94 -0.15 -8.78 16 20 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 21 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 22 N -0.88 -25.69 13.96 55.50 0.77 -24.91 16 23 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 27 C 0.04 0.75 4.77 -5.75 -0.03 0.72 16 28 C 0.15 2.08 4.30 -69.18 -0.30 1.78 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 35 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 38 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 39 H 0.08 0.63 7.95 -51.93 -0.41 0.21 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 43 H 0.06 0.99 8.02 -51.93 -0.42 0.57 16 44 H 0.08 1.50 5.71 -51.93 -0.30 1.20 16 45 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 46 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 47 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 48 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.08 1.57 6.81 -51.93 -0.35 1.21 16 50 H 0.07 1.45 5.65 -51.93 -0.29 1.15 16 LS Contribution 393.52 15.07 5.93 5.93 Total: -1.00 -33.71 393.52 -9.52 -43.23 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -8.20 Total: 11.70 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -1.69 Total: 5.58 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -1.00 Total: -57.11 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.15 Total: -24.21 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.71 -9.52 -43.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221361821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.872 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds