Wall clock time and date at job start Tue Mar 31 2020 20:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 119.99836 * 2 1 4 4 C 1.50702 * 120.00120 * 180.02562 * 2 1 3 5 5 C 1.52994 * 109.47247 * 94.99862 * 4 2 1 6 6 H 1.09001 * 109.46890 * 54.52818 * 5 4 2 7 7 N 1.46502 * 109.47105 * 294.52756 * 5 4 2 8 8 C 1.34778 * 120.00133 * 85.00071 * 7 5 4 9 9 C 1.50700 * 119.99884 * 179.97438 * 8 7 5 10 10 O 1.21279 * 120.00017 * 359.97438 * 8 7 5 11 11 C 1.50697 * 109.47246 * 174.52510 * 5 4 2 12 12 O 1.21274 * 120.00144 * 93.36931 * 11 5 4 13 13 N 1.34783 * 119.99798 * 273.37499 * 11 5 4 14 14 C 1.47618 * 120.90207 * 4.55192 * 13 11 5 15 15 C 1.53888 * 107.50017 * 132.49352 * 14 13 11 16 16 H 1.08996 * 112.09401 * 182.65776 * 15 14 13 17 17 C 1.54548 * 108.36989 * 307.00659 * 15 14 13 18 18 C 1.54279 * 104.84933 * 89.29874 * 17 15 14 19 19 C 1.54961 * 104.80781 * 359.81329 * 18 17 15 20 20 H 1.08999 * 112.25348 * 146.61158 * 19 18 17 21 21 C 1.47168 * 120.70544 * 185.24015 * 13 11 5 22 22 N 1.48309 * 104.15558 * 24.99193 * 19 18 17 23 23 C 1.36935 * 128.07619 * 139.03734 * 22 19 18 24 24 H 1.08004 * 119.99632 * 197.66482 * 23 22 19 25 25 C 1.38810 * 120.00049 * 17.67473 * 23 22 19 26 26 N 1.31618 * 120.00043 * 358.11278 * 25 23 22 27 27 Si 1.86801 * 120.00072 * 178.12133 * 25 23 22 28 28 H 1.48502 * 109.46781 * 269.99721 * 27 25 23 29 29 H 1.48500 * 109.47170 * 29.99160 * 27 25 23 30 30 H 1.48500 * 109.47256 * 149.99811 * 27 25 23 31 31 H 1.07998 * 120.00151 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99767 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47779 * 270.00075 * 3 2 1 34 34 H 1.09007 * 109.47177 * 30.00321 * 3 2 1 35 35 H 1.09005 * 109.47066 * 149.99663 * 3 2 1 36 36 H 1.08998 * 109.46808 * 334.99947 * 4 2 1 37 37 H 1.09001 * 109.46901 * 215.00332 * 4 2 1 38 38 H 0.97000 * 119.99566 * 264.99588 * 7 5 4 39 39 H 1.08997 * 109.47107 * 0.02562 * 9 8 7 40 40 H 1.09004 * 109.46975 * 119.99876 * 9 8 7 41 41 H 1.08994 * 109.47085 * 239.99729 * 9 8 7 42 42 H 1.08996 * 109.38292 * 13.37691 * 14 13 11 43 43 H 1.09001 * 110.63613 * 252.31526 * 14 13 11 44 44 H 1.09004 * 110.36012 * 208.14456 * 17 15 14 45 45 H 1.08999 * 110.35798 * 330.45546 * 17 15 14 46 46 H 1.08998 * 110.36188 * 118.84574 * 18 17 15 47 47 H 1.08998 * 110.35924 * 241.05345 * 18 17 15 48 48 H 1.09001 * 109.74916 * 107.60888 * 21 13 11 49 49 H 1.08995 * 109.75272 * 346.87099 * 21 13 11 50 50 H 0.97004 * 120.00339 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 2.9698 -0.8606 -1.9037 7 7 1.2036 -1.9533 -2.1964 8 6 0.5293 -0.9378 -2.7714 9 6 -0.7293 -1.2157 -3.5523 10 8 0.9354 0.1995 -2.6604 11 6 3.2950 -2.9154 -1.4286 12 8 2.7914 -4.0126 -1.5445 13 7 4.6307 -2.7981 -1.2915 14 6 5.2553 -1.4827 -1.0491 15 6 6.2487 -1.6495 0.1143 16 1 6.7217 -0.7064 0.3879 17 6 5.5020 -2.2946 1.3037 18 6 5.6604 -3.8146 1.0925 19 6 6.4866 -3.9493 -0.2116 20 1 7.1467 -4.8165 -0.1943 21 6 5.5033 -3.9787 -1.3950 22 7 7.2388 -2.6740 -0.2977 23 6 8.5417 -2.4859 -0.6750 24 1 9.0479 -1.5646 -0.4273 25 6 9.2116 -3.4792 -1.3761 26 7 8.6066 -4.6165 -1.6457 27 14 10.9718 -3.2017 -1.9365 28 1 10.9697 -2.5930 -3.2911 29 1 11.6563 -2.2899 -0.9852 30 1 11.6885 -4.5016 -1.9791 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 2.2452 1.6198 -1.0276 34 1 1.4744 2.0647 0.5139 35 1 3.0159 1.1747 0.5139 36 1 1.4386 -2.0856 0.4334 37 1 2.9743 -1.1991 0.5890 38 1 0.8787 -2.8630 -2.2849 39 1 -0.9348 -2.2861 -3.5413 40 1 -1.5639 -0.6812 -3.0985 41 1 -0.5998 -0.8807 -4.5813 42 1 4.4852 -0.7616 -0.7754 43 1 5.7838 -1.1388 -1.9382 44 1 5.9584 -1.9930 2.2466 45 1 4.4482 -2.0169 1.2854 46 1 6.1946 -4.2605 1.9315 47 1 4.6843 -4.2845 0.9723 48 1 6.0560 -3.9469 -2.3340 49 1 4.9016 -4.8865 -1.3515 50 1 9.0748 -5.3108 -2.1353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317744607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:22 Heat of formation + Delta-G solvation = -15.212047 kcal Electronic energy + Delta-G solvation = -31643.723361 eV Core-core repulsion = 27672.443078 eV Total energy + Delta-G solvation = -3971.280283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.67138 -39.44047 -37.88622 -36.29244 -34.10107 -33.86367 -32.43483 -31.21246 -30.41172 -29.36206 -28.59705 -27.19732 -26.36101 -24.66467 -23.89302 -23.14757 -20.56914 -19.96109 -19.71457 -18.80313 -18.45357 -17.51979 -16.55154 -16.44790 -15.90077 -15.54213 -15.29252 -14.75594 -14.70806 -14.52797 -14.31870 -13.83523 -13.72004 -13.35529 -13.22932 -13.07342 -12.86795 -12.77098 -12.59581 -12.45528 -12.10392 -11.81929 -11.78056 -11.68579 -11.63146 -11.32928 -11.04179 -10.99924 -10.95574 -10.84220 -10.37094 -10.10585 -9.90221 -9.85663 -9.79435 -9.60207 -9.46868 -9.32654 -8.83898 -8.61842 -8.17299 -6.88092 -5.87770 -3.27928 2.29274 2.62727 2.82051 3.12913 3.32575 3.38615 3.39991 3.62297 4.36420 4.53825 4.79711 4.88139 5.01378 5.04730 5.10136 5.14654 5.25257 5.28139 5.29168 5.46102 5.55918 5.62301 5.64023 5.67021 5.73310 5.76891 5.82088 5.87430 5.92041 5.96850 6.10586 6.15822 6.29069 6.33556 6.38074 6.49961 6.57576 6.64068 6.70668 6.74133 6.81884 6.88695 6.96797 7.21540 7.48370 7.52006 7.65741 7.91734 8.12041 8.23861 8.48075 9.01348 9.62489 10.38976 11.22916 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.003535 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.223026 B = 7919.940977 C = 8181.921176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.095 4.095 5 C 0.134 3.866 6 H 0.108 0.892 7 N -0.712 5.712 8 C 0.513 3.487 9 C -0.170 4.170 10 O -0.538 6.538 11 C 0.505 3.495 12 O -0.556 6.556 13 N -0.583 5.583 14 C 0.089 3.911 15 C 0.135 3.865 16 H 0.079 0.921 17 C -0.125 4.125 18 C -0.137 4.137 19 C 0.165 3.835 20 H 0.128 0.872 21 C 0.111 3.889 22 N -0.584 5.584 23 C -0.228 4.228 24 H 0.077 0.923 25 C 0.000 4.000 26 N -0.914 5.914 27 Si 0.912 3.088 28 H -0.288 1.288 29 H -0.281 1.281 30 H -0.290 1.290 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.408 0.592 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.646 6.415 1.721 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.095 4.095 3 C -0.173 4.173 4 C -0.133 4.133 5 C 0.025 3.975 6 H 0.125 0.875 7 N -0.367 5.367 8 C 0.300 3.700 9 C -0.229 4.229 10 O -0.415 6.415 11 C 0.291 3.709 12 O -0.436 6.436 13 N -0.314 5.314 14 C -0.036 4.036 15 C 0.026 3.974 16 H 0.097 0.903 17 C -0.164 4.164 18 C -0.176 4.176 19 C 0.057 3.943 20 H 0.146 0.854 21 C -0.012 4.012 22 N -0.305 5.305 23 C -0.356 4.356 24 H 0.095 0.905 25 C -0.197 4.197 26 N -0.560 5.560 27 Si 0.743 3.257 28 H -0.215 1.215 29 H -0.206 1.206 30 H -0.217 1.217 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.244 0.756 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.323 6.531 1.613 16.735 hybrid contribution 0.689 -0.317 -0.518 0.918 sum -14.634 6.214 1.095 15.937 Atomic orbital electron populations 1.23451 0.95243 1.00930 1.04107 1.21415 0.95232 0.94880 0.98005 1.20847 0.99502 0.94238 1.02761 1.21126 1.01482 0.95750 0.94981 1.20764 0.86370 0.96959 0.93369 0.87464 1.45912 1.25851 1.11191 1.53718 1.20664 0.85549 0.84886 0.78865 1.21825 0.95929 1.03658 1.01517 1.90702 1.68763 1.21401 1.60623 1.20349 0.83048 0.90026 0.77514 1.90632 1.73238 1.27763 1.51947 1.48318 1.04886 1.10300 1.67895 1.22758 0.96540 0.83268 1.01000 1.21943 0.89667 0.94294 0.91527 0.90321 1.22541 0.98561 0.96850 0.98448 1.22725 0.99488 0.95287 1.00146 1.22133 0.90477 0.93172 0.88492 0.85424 1.22496 0.91076 0.85495 1.02118 1.45165 1.07311 1.00491 1.77540 1.19000 0.85485 1.02586 1.28530 0.90547 1.24904 0.98854 0.96940 0.99021 1.69750 1.36545 1.05652 1.44021 0.86124 0.83863 0.77031 0.78731 1.21506 1.20627 1.21660 0.88902 0.89360 0.90464 0.92403 0.92201 0.90488 0.89391 0.75553 0.90697 0.88885 0.88906 0.91432 0.91163 0.92541 0.92923 0.92789 0.92938 0.90516 0.91079 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.29 11.62 29.01 0.34 -1.96 16 2 C -0.10 -1.15 3.42 -101.07 -0.35 -1.49 16 3 C -0.12 -1.33 9.96 36.00 0.36 -0.97 16 4 C -0.09 -1.19 4.75 -27.89 -0.13 -1.32 16 5 C 0.13 1.87 1.78 -69.09 -0.12 1.75 16 6 H 0.11 1.60 6.22 -51.93 -0.32 1.27 16 7 N -0.71 -8.83 4.98 -54.94 -0.27 -9.10 16 8 C 0.51 6.15 6.21 -10.99 -0.07 6.08 16 9 C -0.17 -1.34 10.39 36.01 0.37 -0.97 16 10 O -0.54 -8.00 13.58 5.56 0.08 -7.93 16 11 C 0.50 8.56 6.90 -10.98 -0.08 8.49 16 12 O -0.56 -10.69 15.50 5.56 0.09 -10.60 16 13 N -0.58 -10.54 2.24 -171.16 -0.38 -10.92 16 14 C 0.09 1.50 5.56 -2.97 -0.02 1.49 16 15 C 0.13 2.46 4.27 -65.66 -0.28 2.18 16 16 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 17 C -0.13 -2.08 6.18 -25.25 -0.16 -2.24 16 18 C -0.14 -2.57 6.21 -25.03 -0.16 -2.72 16 19 C 0.16 3.61 3.17 -65.43 -0.21 3.40 16 20 H 0.13 3.22 6.14 -51.93 -0.32 2.90 16 21 C 0.11 2.34 5.88 -3.21 -0.02 2.32 16 22 N -0.58 -13.34 2.81 -152.34 -0.43 -13.76 16 23 C -0.23 -5.79 10.38 -15.06 -0.16 -5.94 16 24 H 0.08 1.89 7.83 -52.48 -0.41 1.48 16 25 C 0.00 0.00 5.49 -17.43 -0.10 -0.09 16 26 N -0.91 -24.49 10.43 55.49 0.58 -23.91 16 27 Si 0.91 20.83 29.55 -169.99 -5.02 15.80 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 31 H 0.09 1.02 8.04 -52.49 -0.42 0.60 16 32 H 0.09 0.96 7.99 -52.49 -0.42 0.54 16 33 H 0.08 0.98 7.44 -51.93 -0.39 0.59 16 34 H 0.06 0.59 8.06 -51.92 -0.42 0.17 16 35 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.08 0.98 7.99 -51.93 -0.41 0.56 16 37 H 0.09 1.10 5.04 -51.93 -0.26 0.84 16 38 H 0.41 4.77 7.64 -40.82 -0.31 4.45 16 39 H 0.07 0.46 7.91 -51.93 -0.41 0.05 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.94 5.02 -51.93 -0.26 0.68 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.78 5.68 -51.93 -0.30 0.49 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.05 0.96 7.85 -51.93 -0.41 0.56 16 48 H 0.08 1.85 8.04 -51.93 -0.42 1.43 16 49 H 0.07 1.51 7.08 -51.93 -0.37 1.14 16 50 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -29.13 381.80 -8.31 -37.45 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.94 Total: 9.23 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.76 Total: 7.99 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.51 Total: -57.70 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.16 Total: -18.53 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.13 -8.31 -37.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317744607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.237 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds