Wall clock time and date at job start Tue Mar 31 2020 20:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50693 * 119.99836 * 2 1 4 4 C 1.50702 * 120.00120 * 180.02562 * 2 1 3 5 5 C 1.52994 * 109.47247 * 94.99862 * 4 2 1 6 6 H 1.09001 * 109.46890 * 54.52818 * 5 4 2 7 7 N 1.46502 * 109.47105 * 294.52756 * 5 4 2 8 8 C 1.34778 * 120.00133 * 85.00071 * 7 5 4 9 9 C 1.50700 * 119.99884 * 179.97438 * 8 7 5 10 10 O 1.21279 * 120.00017 * 359.97438 * 8 7 5 11 11 C 1.50697 * 109.47246 * 174.52510 * 5 4 2 12 12 O 1.21274 * 120.00144 * 93.36931 * 11 5 4 13 13 N 1.34783 * 119.99798 * 273.37499 * 11 5 4 14 14 C 1.47618 * 120.90207 * 4.55192 * 13 11 5 15 15 C 1.53888 * 107.50017 * 132.49352 * 14 13 11 16 16 H 1.08996 * 112.09401 * 182.65776 * 15 14 13 17 17 C 1.54548 * 108.36989 * 307.00659 * 15 14 13 18 18 C 1.54279 * 104.84933 * 89.29874 * 17 15 14 19 19 C 1.54961 * 104.80781 * 359.81329 * 18 17 15 20 20 H 1.08999 * 112.25348 * 146.61158 * 19 18 17 21 21 C 1.47168 * 120.70544 * 185.24015 * 13 11 5 22 22 N 1.48309 * 104.15558 * 24.99193 * 19 18 17 23 23 C 1.36935 * 128.07619 * 139.03734 * 22 19 18 24 24 H 1.08004 * 119.99632 * 197.66482 * 23 22 19 25 25 C 1.38810 * 120.00049 * 17.67473 * 23 22 19 26 26 N 1.31618 * 120.00043 * 358.11278 * 25 23 22 27 27 Si 1.86801 * 120.00072 * 178.12133 * 25 23 22 28 28 H 1.48502 * 109.46781 * 269.99721 * 27 25 23 29 29 H 1.48500 * 109.47170 * 29.99160 * 27 25 23 30 30 H 1.48500 * 109.47256 * 149.99811 * 27 25 23 31 31 H 1.07998 * 120.00151 * 359.97438 * 1 2 3 32 32 H 1.08001 * 119.99767 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47779 * 270.00075 * 3 2 1 34 34 H 1.09007 * 109.47177 * 30.00321 * 3 2 1 35 35 H 1.09005 * 109.47066 * 149.99663 * 3 2 1 36 36 H 1.08998 * 109.46808 * 334.99947 * 4 2 1 37 37 H 1.09001 * 109.46901 * 215.00332 * 4 2 1 38 38 H 0.97000 * 119.99566 * 264.99588 * 7 5 4 39 39 H 1.08997 * 109.47107 * 0.02562 * 9 8 7 40 40 H 1.09004 * 109.46975 * 119.99876 * 9 8 7 41 41 H 1.08994 * 109.47085 * 239.99729 * 9 8 7 42 42 H 1.08996 * 109.38292 * 13.37691 * 14 13 11 43 43 H 1.09001 * 110.63613 * 252.31526 * 14 13 11 44 44 H 1.09004 * 110.36012 * 208.14456 * 17 15 14 45 45 H 1.08999 * 110.35798 * 330.45546 * 17 15 14 46 46 H 1.08998 * 110.36188 * 118.84574 * 18 17 15 47 47 H 1.08998 * 110.35924 * 241.05345 * 18 17 15 48 48 H 1.09001 * 109.74916 * 107.60888 * 21 13 11 49 49 H 1.08995 * 109.75272 * 346.87099 * 21 13 11 50 50 H 0.97004 * 120.00339 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 6 2.4274 -1.6833 -1.4377 6 1 2.9698 -0.8606 -1.9037 7 7 1.2036 -1.9533 -2.1964 8 6 0.5293 -0.9378 -2.7714 9 6 -0.7293 -1.2157 -3.5523 10 8 0.9354 0.1995 -2.6604 11 6 3.2950 -2.9154 -1.4286 12 8 2.7914 -4.0126 -1.5445 13 7 4.6307 -2.7981 -1.2915 14 6 5.2553 -1.4827 -1.0491 15 6 6.2487 -1.6495 0.1143 16 1 6.7217 -0.7064 0.3879 17 6 5.5020 -2.2946 1.3037 18 6 5.6604 -3.8146 1.0925 19 6 6.4866 -3.9493 -0.2116 20 1 7.1467 -4.8165 -0.1943 21 6 5.5033 -3.9787 -1.3950 22 7 7.2388 -2.6740 -0.2977 23 6 8.5417 -2.4859 -0.6750 24 1 9.0479 -1.5646 -0.4273 25 6 9.2116 -3.4792 -1.3761 26 7 8.6066 -4.6165 -1.6457 27 14 10.9718 -3.2017 -1.9365 28 1 10.9697 -2.5930 -3.2911 29 1 11.6563 -2.2899 -0.9852 30 1 11.6885 -4.5016 -1.9791 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 2.2452 1.6198 -1.0276 34 1 1.4744 2.0647 0.5139 35 1 3.0159 1.1747 0.5139 36 1 1.4386 -2.0856 0.4334 37 1 2.9743 -1.1991 0.5890 38 1 0.8787 -2.8630 -2.2849 39 1 -0.9348 -2.2861 -3.5413 40 1 -1.5639 -0.6812 -3.0985 41 1 -0.5998 -0.8807 -4.5813 42 1 4.4852 -0.7616 -0.7754 43 1 5.7838 -1.1388 -1.9382 44 1 5.9584 -1.9930 2.2466 45 1 4.4482 -2.0169 1.2854 46 1 6.1946 -4.2605 1.9315 47 1 4.6843 -4.2845 0.9723 48 1 6.0560 -3.9469 -2.3340 49 1 4.9016 -4.8865 -1.3515 50 1 9.0748 -5.3108 -2.1353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317744607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:20 Heat of formation + Delta-G solvation = -32.313126 kcal Electronic energy + Delta-G solvation = -31644.464920 eV Core-core repulsion = 27672.443078 eV Total energy + Delta-G solvation = -3972.021842 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.99388 -40.64714 -39.31032 -37.31033 -35.49208 -35.09804 -34.18698 -32.52606 -31.62635 -31.02838 -29.51722 -28.11809 -27.83570 -26.10100 -25.49799 -24.57137 -21.66899 -21.32535 -21.22785 -20.34315 -19.49028 -18.81052 -18.04351 -17.63574 -17.24582 -16.83099 -16.50655 -16.39987 -16.00282 -15.66816 -15.43544 -15.29485 -14.94337 -14.67880 -14.55652 -14.46829 -14.25102 -13.73853 -13.64079 -13.45120 -13.36876 -13.23088 -13.19412 -12.90511 -12.79292 -12.77497 -12.61244 -12.49781 -12.30782 -12.02612 -11.95301 -11.80464 -11.58061 -11.37353 -11.14507 -10.87161 -10.82698 -10.67563 -10.39084 -9.80696 -9.56981 -8.69109 -7.83004 -5.23161 1.30249 1.48539 1.50491 1.51133 1.57941 1.76367 1.89528 2.43155 2.51445 3.28065 3.35174 3.51135 3.87480 3.95643 4.02450 4.06960 4.11551 4.14106 4.21504 4.27558 4.32311 4.34606 4.48348 4.53695 4.58891 4.69633 4.71153 4.82387 4.84343 4.90297 4.96376 4.98769 5.05442 5.07413 5.09384 5.11330 5.16381 5.24254 5.28153 5.38967 5.42017 5.55585 5.58414 5.82201 5.83833 6.07285 6.27276 6.48176 6.58334 7.04303 7.08069 7.30957 7.73544 8.52302 9.26061 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018046 B = 0.003535 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.223026 B = 7919.940977 C = 8181.921176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.115 4.115 4 C -0.088 4.088 5 C 0.145 3.855 6 H 0.101 0.899 7 N -0.712 5.712 8 C 0.509 3.491 9 C -0.164 4.164 10 O -0.568 6.568 11 C 0.507 3.493 12 O -0.578 6.578 13 N -0.586 5.586 14 C 0.097 3.903 15 C 0.129 3.871 16 H 0.094 0.906 17 C -0.114 4.114 18 C -0.128 4.128 19 C 0.162 3.838 20 H 0.089 0.911 21 C 0.128 3.872 22 N -0.605 5.605 23 C -0.231 4.231 24 H 0.081 0.919 25 C -0.053 4.053 26 N -0.938 5.938 27 Si 0.969 3.031 28 H -0.292 1.292 29 H -0.270 1.270 30 H -0.299 1.299 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.412 0.588 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.077 0.923 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.038 0.962 49 H 0.063 0.937 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.600 8.225 2.664 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.107 4.107 3 C -0.171 4.171 4 C -0.127 4.127 5 C 0.036 3.964 6 H 0.119 0.881 7 N -0.367 5.367 8 C 0.298 3.702 9 C -0.223 4.223 10 O -0.447 6.447 11 C 0.295 3.705 12 O -0.459 6.459 13 N -0.317 5.317 14 C -0.028 4.028 15 C 0.022 3.978 16 H 0.112 0.888 17 C -0.152 4.152 18 C -0.168 4.168 19 C 0.054 3.946 20 H 0.107 0.893 21 C 0.004 3.996 22 N -0.326 5.326 23 C -0.360 4.360 24 H 0.099 0.901 25 C -0.247 4.247 26 N -0.585 5.585 27 Si 0.799 3.201 28 H -0.219 1.219 29 H -0.195 1.195 30 H -0.226 1.226 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.250 0.750 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.081 0.919 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.315 8.372 2.571 19.403 hybrid contribution 1.220 -0.879 -0.827 1.716 sum -16.094 7.493 1.744 17.839 Atomic orbital electron populations 1.23569 0.95146 1.01451 1.02849 1.21439 0.95509 0.94744 0.99014 1.20827 1.00164 0.94157 1.01992 1.21074 1.01780 0.96183 0.93618 1.20607 0.86504 0.94536 0.94774 0.88120 1.45983 1.25265 1.11720 1.53721 1.21394 0.86263 0.84170 0.78358 1.21861 0.93967 1.05288 1.01180 1.90695 1.69751 1.22530 1.61680 1.20881 0.82593 0.90816 0.76196 1.90622 1.73547 1.29091 1.52595 1.48270 1.05190 1.09762 1.68447 1.22712 0.97115 0.83171 0.99771 1.22205 0.89131 0.94025 0.92434 0.88804 1.22483 0.99961 0.94625 0.98152 1.22594 0.98829 0.97242 0.98087 1.21939 0.90378 0.91853 0.90429 0.89333 1.21989 0.90997 0.86635 1.00007 1.45342 1.07452 1.02098 1.77750 1.19310 0.86891 1.02302 1.27504 0.90082 1.25565 1.02014 0.97086 1.00018 1.69959 1.37399 1.06170 1.45004 0.85221 0.80416 0.76382 0.78096 1.21906 1.19507 1.22618 0.88423 0.88817 0.92045 0.91465 0.91238 0.90371 0.89006 0.75050 0.88763 0.87504 0.88121 0.87845 0.92824 0.91134 0.90451 0.92820 0.92589 0.94394 0.91869 0.94382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 11.62 67.78 0.79 -3.09 16 2 C -0.11 -2.29 3.42 -16.49 -0.06 -2.34 16 3 C -0.11 -2.31 9.96 71.23 0.71 -1.60 16 4 C -0.09 -1.97 4.75 29.85 0.14 -1.82 16 5 C 0.14 3.76 1.78 44.24 0.08 3.84 16 6 H 0.10 2.80 6.22 -2.39 -0.01 2.79 16 7 N -0.71 -16.24 4.98 -446.11 -2.22 -18.46 16 8 C 0.51 11.08 6.21 87.66 0.54 11.62 16 9 C -0.16 -2.12 10.39 71.24 0.74 -1.38 16 10 O -0.57 -15.83 13.58 -3.03 -0.04 -15.87 16 11 C 0.51 16.65 6.90 87.66 0.60 17.25 16 12 O -0.58 -21.79 15.50 -3.01 -0.05 -21.84 16 13 N -0.59 -20.90 2.24 -813.80 -1.82 -22.72 16 14 C 0.10 3.11 5.56 86.46 0.48 3.59 16 15 C 0.13 4.51 4.27 45.47 0.19 4.71 16 16 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 17 C -0.11 -3.48 6.18 31.55 0.20 -3.28 16 18 C -0.13 -4.69 6.21 31.70 0.20 -4.49 16 19 C 0.16 7.26 3.17 45.62 0.14 7.40 16 20 H 0.09 4.70 6.14 -2.39 -0.01 4.69 16 21 C 0.13 5.58 5.88 86.55 0.51 6.09 16 22 N -0.60 -27.72 2.81 -635.89 -1.79 -29.51 16 23 C -0.23 -11.83 10.38 84.03 0.87 -10.96 16 24 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 25 C -0.05 -2.79 5.49 84.86 0.47 -2.32 16 26 N -0.94 -52.50 10.43 21.65 0.23 -52.28 16 27 Si 0.97 43.70 29.55 68.60 2.03 45.73 16 28 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 29 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 30 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 31 H 0.10 1.87 8.04 -2.91 -0.02 1.85 16 32 H 0.09 1.76 7.99 -2.91 -0.02 1.74 16 33 H 0.06 1.45 7.44 -2.39 -0.02 1.43 16 34 H 0.07 1.20 8.06 -2.38 -0.02 1.18 16 35 H 0.07 1.23 8.09 -2.38 -0.02 1.21 16 36 H 0.08 1.75 7.99 -2.39 -0.02 1.73 16 37 H 0.09 1.96 5.04 -2.39 -0.01 1.95 16 38 H 0.41 8.82 7.64 -92.71 -0.71 8.11 16 39 H 0.09 0.86 7.91 -2.39 -0.02 0.84 16 40 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.10 2.60 5.02 -2.39 -0.01 2.59 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.08 2.00 5.68 -2.39 -0.01 1.99 16 46 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.06 1.99 7.85 -2.39 -0.02 1.97 16 48 H 0.04 1.93 8.04 -2.39 -0.02 1.91 16 49 H 0.06 2.80 7.08 -2.39 -0.02 2.78 16 50 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -64.65 381.80 3.18 -61.47 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.24 Total: 30.27 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 6.61 Total: 23.20 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -5.60 Total: -122.97 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.09 Total: -37.71 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -64.65 3.18 -61.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317744607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.155 kcal (2) G-P(sol) polarization free energy of solvation -64.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds