Wall clock time and date at job start Tue Mar 31 2020 19:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47341 * 2 1 4 4 C 1.53003 * 109.46892 * 119.99632 * 2 1 3 5 5 C 1.53005 * 109.47168 * 157.84030 * 4 2 1 6 6 C 1.52997 * 109.47418 * 54.47654 * 5 4 2 7 7 C 1.53005 * 109.46810 * 294.47621 * 5 4 2 8 8 N 1.46900 * 109.46893 * 299.11292 * 7 5 4 9 9 N 1.46503 * 109.47077 * 174.48025 * 5 4 2 10 10 C 1.34775 * 119.99800 * 179.72086 * 9 5 4 11 11 O 1.21592 * 119.99816 * 359.97438 * 10 9 5 12 12 N 1.34778 * 120.00067 * 179.97438 * 10 9 5 13 13 C 1.40025 * 119.99957 * 185.38352 * 12 10 9 14 14 C 1.38917 * 119.99762 * 212.80490 * 13 12 10 15 15 C 1.38011 * 119.99463 * 179.81256 * 14 13 12 16 16 C 1.38897 * 120.00264 * 0.43793 * 15 14 13 17 17 O 1.35783 * 119.99697 * 179.77328 * 16 15 14 18 18 C 1.34815 * 116.99788 * 185.73104 * 17 16 15 19 19 H 1.07997 * 119.99974 * 5.47568 * 18 17 16 20 20 C 1.38625 * 120.00025 * 185.48276 * 18 17 16 21 21 N 1.31573 * 120.00419 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99974 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47200 * 90.00148 * 22 20 18 24 24 H 1.48500 * 109.47209 * 210.00390 * 22 20 18 25 25 H 1.48498 * 109.47228 * 330.00169 * 22 20 18 26 26 C 1.38903 * 120.00388 * 359.79098 * 16 15 14 27 27 C 1.38006 * 119.99964 * 359.97438 * 26 16 15 28 28 H 1.09005 * 109.46981 * 64.88277 * 1 2 3 29 29 H 1.08997 * 109.47099 * 184.88228 * 1 2 3 30 30 H 1.09005 * 109.47183 * 304.88689 * 1 2 3 31 31 H 1.09002 * 109.47571 * 239.99419 * 2 1 3 32 32 H 1.08998 * 109.47271 * 185.75474 * 3 2 1 33 33 H 1.09000 * 109.46716 * 305.74831 * 3 2 1 34 34 H 1.09001 * 109.47254 * 65.74691 * 3 2 1 35 35 H 1.08993 * 109.47494 * 37.83460 * 4 2 1 36 36 H 1.09005 * 109.47274 * 277.83640 * 4 2 1 37 37 H 1.08993 * 109.47110 * 168.80486 * 6 5 4 38 38 H 1.09008 * 109.46912 * 288.80058 * 6 5 4 39 39 H 1.08996 * 109.46831 * 48.79976 * 6 5 4 40 40 H 1.09000 * 109.47015 * 59.10610 * 7 5 4 41 41 H 1.08999 * 109.46912 * 179.10917 * 7 5 4 42 42 H 1.00908 * 110.99758 * 179.97438 * 8 7 5 43 43 H 1.00895 * 111.00325 * 303.94696 * 8 7 5 44 44 H 0.96995 * 119.99630 * 359.97438 * 9 5 4 45 45 H 0.97003 * 119.99581 * 5.37848 * 12 10 9 46 46 H 1.07996 * 119.99758 * 359.97438 * 14 13 12 47 47 H 1.08004 * 119.99307 * 180.18646 * 15 14 13 48 48 H 0.97001 * 120.00355 * 180.02562 * 21 20 18 49 49 H 1.07999 * 120.00446 * 179.97438 * 26 16 15 50 50 H 1.08008 * 120.00205 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.4695 -1.2102 1.0081 6 6 4.3441 -0.0335 0.5709 7 6 3.4652 -2.2775 -0.0882 8 7 2.6426 -3.4166 0.3406 9 7 4.0049 -1.7834 2.2455 10 6 5.2550 -2.2863 2.2695 11 8 5.9383 -2.2648 1.2639 12 7 5.7478 -2.8132 3.4079 13 6 7.0825 -3.2325 3.4650 14 6 7.4366 -4.3169 4.2578 15 6 8.7515 -4.7326 4.3110 16 6 9.7223 -4.0612 3.5790 17 8 11.0168 -4.4674 3.6350 18 6 11.9261 -3.7033 2.9972 19 1 11.6260 -2.7679 2.5486 20 6 13.2463 -4.1184 2.9171 21 7 14.1338 -3.3730 2.2943 22 14 13.7655 -5.7362 3.6935 23 1 13.6210 -6.8308 2.7004 24 1 15.1829 -5.6450 4.1269 25 1 12.9053 -6.0190 4.8705 26 6 9.3692 -2.9739 2.7899 27 6 8.0535 -2.5611 2.7329 28 1 -0.3633 0.4362 -0.9305 29 1 -0.3633 -1.0239 0.0875 30 1 -0.3634 0.5878 0.8430 31 1 1.8934 -0.5139 -0.8899 32 1 3.1251 1.4442 -0.1030 33 1 1.5951 1.9852 -0.8341 34 1 1.7632 1.9258 0.9370 35 1 1.3959 -1.5736 1.4652 36 1 2.0289 -0.0341 2.0955 37 1 5.3920 -0.3325 0.5911 38 1 4.0712 0.2657 -0.4412 39 1 4.1922 0.8045 1.2510 40 1 3.0521 -1.8556 -1.0044 41 1 4.4855 -2.6145 -0.2711 42 1 2.6235 -4.1355 -0.3671 43 1 2.9667 -3.7852 1.2221 44 1 3.4582 -1.8042 3.0465 45 1 5.1777 -2.9017 4.1878 46 1 6.6824 -4.8362 4.8304 47 1 9.0262 -5.5776 4.9250 48 1 15.0575 -3.6637 2.2379 49 1 10.1241 -2.4516 2.2211 50 1 7.7789 -1.7155 2.1197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647228021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:25 Heat of formation + Delta-G solvation = -24.108320 kcal Electronic energy + Delta-G solvation = -29302.279588 eV Core-core repulsion = 25330.613533 eV Total energy + Delta-G solvation = -3971.666055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.83535 -39.29393 -38.35151 -36.63949 -34.92997 -34.09336 -33.13569 -32.29198 -30.73693 -30.26671 -28.20508 -27.70838 -26.70178 -25.11884 -24.73204 -22.86075 -22.07640 -20.93791 -20.16907 -19.46700 -18.52505 -17.80381 -17.46509 -16.65885 -16.27274 -15.93614 -15.28345 -15.18010 -14.64294 -14.49935 -14.22303 -14.11345 -14.06397 -13.85250 -13.80533 -13.69762 -13.14140 -12.75340 -12.45906 -12.43864 -12.39573 -12.32337 -12.18692 -12.12514 -11.71627 -11.64508 -11.43603 -11.31614 -10.99603 -10.92423 -10.83087 -10.74971 -10.56290 -10.22068 -9.77179 -9.63407 -9.32125 -9.23204 -8.73590 -8.66807 -8.26627 -7.00768 -6.38986 -4.04639 2.06732 2.15106 2.66516 3.22106 3.26287 3.30107 3.41512 4.14558 4.25520 4.31785 4.51327 4.54594 4.60277 4.69664 4.87950 4.89332 4.99472 5.10814 5.13643 5.35347 5.36511 5.46194 5.54100 5.54996 5.57179 5.59746 5.66021 5.69751 5.73054 5.79513 5.88139 5.95041 6.08992 6.10930 6.11375 6.16201 6.20640 6.30858 6.52441 6.61604 6.67419 6.84984 6.93258 7.12144 7.18970 7.23841 7.32613 7.61016 7.81548 8.03434 8.05388 8.66238 8.96245 9.58549 10.68753 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025837 B = 0.002173 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.477296 B =12879.961466 C =13354.229085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 C -0.172 4.172 4 C -0.109 4.109 5 C 0.201 3.799 6 C -0.173 4.173 7 C 0.043 3.957 8 N -0.845 5.845 9 N -0.740 5.740 10 C 0.698 3.302 11 O -0.569 6.569 12 N -0.678 5.678 13 C 0.067 3.933 14 C -0.100 4.100 15 C -0.176 4.176 16 C 0.148 3.852 17 O -0.218 6.218 18 C -0.387 4.387 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.880 5.880 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.204 4.204 27 C -0.067 4.067 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.338 0.662 43 H 0.337 0.663 44 H 0.394 0.606 45 H 0.397 0.603 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.279 0.721 49 H 0.136 0.864 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.091 5.051 -0.587 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.229 4.229 4 C -0.147 4.147 5 C 0.115 3.885 6 C -0.231 4.231 7 C -0.089 4.089 8 N -0.374 5.374 9 N -0.396 5.396 10 C 0.399 3.601 11 O -0.446 6.446 12 N -0.325 5.325 13 C -0.026 4.026 14 C -0.121 4.121 15 C -0.196 4.196 16 C 0.096 3.904 17 O -0.123 6.123 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.518 5.518 22 Si 0.732 3.268 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.223 4.223 27 C -0.087 4.087 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.227 0.773 45 H 0.231 0.769 46 H 0.133 0.867 47 H 0.139 0.861 48 H 0.089 0.911 49 H 0.153 0.847 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.727 5.477 -1.483 27.323 hybrid contribution 0.667 -1.117 0.882 1.572 sum -26.060 4.360 -0.601 26.429 Atomic orbital electron populations 1.21832 0.95218 1.01795 1.01341 1.21051 0.95582 0.95985 0.98168 1.22469 1.03179 0.95828 1.01442 1.21837 0.94392 1.00439 0.98061 1.20170 0.92949 0.92300 0.83118 1.22589 1.02295 0.96989 1.01204 1.22310 0.97321 0.92097 0.97151 1.58793 1.58139 1.12284 1.08135 1.45314 1.14455 1.65675 1.14184 1.16009 0.81656 0.78708 0.83722 1.90908 1.58828 1.62173 1.32676 1.42413 1.11408 1.65434 1.13240 1.17074 0.81826 0.98282 1.05416 1.20299 0.95639 0.95191 1.00975 1.19958 0.91277 1.03435 1.04924 1.19141 0.84761 0.92993 0.93507 1.83582 1.12523 1.49426 1.66769 1.20755 0.87817 1.03348 1.34368 0.87669 1.24471 0.94444 0.99055 0.96147 1.69658 1.03450 1.38056 1.40622 0.86174 0.77683 0.82437 0.80546 1.19949 1.20829 1.18359 1.21213 0.96405 1.00669 1.04056 1.20791 0.91224 0.98722 0.97995 0.92993 0.92423 0.93027 0.90722 0.90387 0.93169 0.92975 0.89924 0.92018 0.90176 0.91026 0.92269 0.90575 0.92442 0.84994 0.85122 0.77295 0.76900 0.86691 0.86126 0.91095 0.84664 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.13 37.16 0.34 -0.57 16 2 C -0.09 -0.61 2.42 -90.62 -0.22 -0.83 16 3 C -0.17 -1.16 8.40 37.16 0.31 -0.84 16 4 C -0.11 -0.78 4.03 -26.73 -0.11 -0.88 16 5 C 0.20 1.81 0.60 -131.81 -0.08 1.73 16 6 C -0.17 -1.73 6.70 37.16 0.25 -1.49 16 7 C 0.04 0.43 5.32 -3.82 -0.02 0.41 16 8 N -0.84 -7.40 8.80 -10.37 -0.09 -7.49 16 9 N -0.74 -6.78 4.33 -52.41 -0.23 -7.00 16 10 C 0.70 9.21 7.67 -86.92 -0.67 8.54 16 11 O -0.57 -9.78 10.21 5.29 0.05 -9.72 16 12 N -0.68 -8.56 5.35 -14.18 -0.08 -8.63 16 13 C 0.07 1.13 6.29 -83.61 -0.53 0.60 16 14 C -0.10 -1.64 9.95 -39.41 -0.39 -2.03 16 15 C -0.18 -3.41 9.98 -39.42 -0.39 -3.80 16 16 C 0.15 3.44 6.65 -39.09 -0.26 3.18 16 17 O -0.22 -5.77 8.58 -0.01 0.00 -5.77 16 18 C -0.39 -11.02 9.90 30.88 0.31 -10.72 16 19 H 0.11 3.08 5.52 -52.49 -0.29 2.79 16 20 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 21 N -0.88 -25.67 13.96 55.48 0.77 -24.89 16 22 Si 0.91 21.80 28.62 -169.99 -4.86 16.94 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 26 C -0.20 -4.57 9.13 -39.42 -0.36 -4.92 16 27 C -0.07 -1.32 8.65 -39.42 -0.34 -1.66 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 8.02 -51.93 -0.42 -0.04 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.57 5.90 -51.93 -0.31 0.26 16 32 H 0.08 0.56 3.97 -51.93 -0.21 0.35 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.34 8.00 -51.93 -0.42 -0.08 16 35 H 0.08 0.62 7.19 -51.93 -0.37 0.25 16 36 H 0.06 0.41 7.85 -51.93 -0.41 0.01 16 37 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 38 H 0.07 0.64 5.94 -51.92 -0.31 0.33 16 39 H 0.06 0.55 7.25 -51.93 -0.38 0.17 16 40 H 0.08 0.71 6.22 -51.93 -0.32 0.39 16 41 H 0.06 0.78 6.17 -51.93 -0.32 0.46 16 42 H 0.34 2.75 9.08 -39.29 -0.36 2.39 16 43 H 0.34 3.09 8.27 -39.29 -0.32 2.77 16 44 H 0.39 2.58 8.49 -40.82 -0.35 2.24 16 45 H 0.40 3.53 8.83 -40.82 -0.36 3.17 16 46 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 48 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.14 3.22 5.71 -52.49 -0.30 2.92 16 50 H 0.12 2.45 6.39 -52.48 -0.34 2.12 16 LS Contribution 385.10 15.07 5.80 5.80 Total: -1.00 -31.43 385.10 -8.21 -39.64 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -7.33 Total: 12.78 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.26 Total: -11.63 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.38 Total: -48.03 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.05 Total: -15.49 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.43 -8.21 -39.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647228021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.529 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds