Wall clock time and date at job start Tue Mar 31 2020 19:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34784 * 120.00183 * 2 1 4 4 O 1.21610 * 120.00008 * 174.84060 * 3 2 1 5 5 C 1.47418 * 119.99612 * 354.83629 * 3 2 1 6 6 C 1.36094 * 126.44556 * 185.04827 * 5 3 2 7 7 O 1.34260 * 106.94760 * 179.97438 * 6 5 3 8 8 C 1.34055 * 108.22506 * 359.97438 * 7 6 5 9 9 C 1.50703 * 125.37364 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47165 * 240.02502 * 9 8 7 11 11 C 1.53002 * 109.47238 * 0.02562 * 9 8 7 12 12 C 1.53001 * 109.47065 * 120.02646 * 9 8 7 13 13 N 1.29932 * 109.24654 * 359.72381 * 8 7 6 14 14 C 1.46505 * 120.00144 * 179.97438 * 2 1 3 15 15 H 1.08996 * 109.47043 * 175.03644 * 14 2 1 16 16 C 1.52998 * 109.46987 * 55.03841 * 14 2 1 17 17 N 1.46495 * 109.47244 * 54.99791 * 16 14 2 18 18 C 1.36939 * 120.00036 * 179.72419 * 17 16 14 19 19 H 1.08005 * 119.99836 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00018 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00261 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46718 * 89.99925 * 22 20 18 24 24 H 1.48495 * 109.47078 * 209.99671 * 22 20 18 25 25 H 1.48498 * 109.47098 * 330.00138 * 22 20 18 26 26 C 1.53001 * 109.46874 * 295.03772 * 14 2 1 27 27 C 1.53006 * 117.49887 * 253.56659 * 26 14 2 28 28 C 1.53004 * 117.49587 * 184.91042 * 26 14 2 29 29 H 1.08997 * 109.46823 * 184.97050 * 1 2 3 30 30 H 1.08996 * 109.47080 * 304.97060 * 1 2 3 31 31 H 1.08992 * 109.46821 * 64.97086 * 1 2 3 32 32 H 1.07994 * 126.52447 * 359.97394 * 6 5 3 33 33 H 1.09008 * 109.47161 * 60.00007 * 10 9 8 34 34 H 1.08995 * 109.47705 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47325 * 300.00673 * 10 9 8 36 36 H 1.09004 * 109.46833 * 60.00335 * 11 9 8 37 37 H 1.08997 * 109.46967 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.46796 * 300.00011 * 11 9 8 39 39 H 1.09002 * 109.46617 * 59.99822 * 12 9 8 40 40 H 1.08997 * 109.47305 * 179.97438 * 12 9 8 41 41 H 1.08994 * 109.46982 * 300.00006 * 12 9 8 42 42 H 1.08998 * 109.46800 * 295.00018 * 16 14 2 43 43 H 1.09001 * 109.47005 * 175.00349 * 16 14 2 44 44 H 0.97001 * 119.99701 * 0.02562 * 17 16 14 45 45 H 0.96994 * 120.00231 * 180.02562 * 21 20 18 46 46 H 1.08996 * 115.55298 * 39.24085 * 26 14 2 47 47 H 1.09002 * 117.49545 * 0.02562 * 27 26 14 48 48 H 1.08997 * 117.49872 * 145.01861 * 27 26 14 49 49 H 1.08997 * 117.49707 * 214.97611 * 28 26 14 50 50 H 1.08994 * 117.49858 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3514 1.1693 0.0947 5 6 1.4063 2.4413 -0.1149 6 6 1.9545 3.6821 -0.2248 7 8 0.9366 4.5540 -0.3048 8 6 -0.2115 3.8645 -0.2460 9 6 -1.5930 4.4640 -0.3032 10 6 -2.3517 4.1202 0.9802 11 6 -1.4842 5.9841 -0.4396 12 6 -2.3458 3.8964 -1.5082 13 7 0.0548 2.5974 -0.1384 14 6 2.1976 -1.2687 0.0006 15 1 3.2658 -1.0715 -0.0884 16 6 1.7367 -2.1242 -1.1812 17 7 1.8880 -1.3629 -2.4236 18 6 1.5419 -1.9303 -3.6209 19 1 1.1569 -2.9390 -3.6491 20 6 1.6858 -1.2090 -4.7981 21 7 2.1554 0.0200 -4.7637 22 14 1.2142 -1.9833 -6.4314 23 1 -0.2135 -1.6958 -6.7215 24 1 2.0624 -1.4172 -7.5108 25 1 1.4188 -3.4524 -6.3601 26 6 1.9238 -2.0150 1.3079 27 6 3.0467 -2.0561 2.3464 28 6 2.6913 -3.3158 1.5527 29 1 -0.3633 -1.0238 0.0890 30 1 -0.3633 0.5890 0.8421 31 1 -0.3633 0.4348 -0.9311 32 1 3.0077 3.9201 -0.2440 33 1 -1.8153 4.5246 1.8388 34 1 -3.3510 4.5534 0.9388 35 1 -2.4292 3.0373 1.0775 36 1 -0.9437 6.2290 -1.3540 37 1 -2.4833 6.4176 -0.4814 38 1 -0.9479 6.3884 0.4189 39 1 -2.4233 2.8135 -1.4109 40 1 -3.3451 4.3297 -1.5493 41 1 -1.8053 4.1414 -2.4225 42 1 0.6897 -2.3957 -1.0467 43 1 2.3428 -3.0287 -1.2332 44 1 2.2376 -0.4584 -2.3986 45 1 2.2556 0.5241 -5.5863 46 1 0.8996 -1.9581 1.6762 47 1 3.9803 -1.5511 2.0983 48 1 2.7612 -2.0264 3.3978 49 1 2.1720 -4.1144 2.0825 50 1 3.3908 -3.6401 0.7823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676216063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:42 Heat of formation + Delta-G solvation = 27.020026 kcal Electronic energy + Delta-G solvation = -30503.467043 eV Core-core repulsion = 26534.018080 eV Total energy + Delta-G solvation = -3969.448963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.32038 -39.62959 -37.46177 -37.08849 -35.17562 -34.65596 -33.74244 -31.13946 -29.75032 -28.21598 -27.56458 -27.45897 -26.36890 -24.50246 -23.41328 -23.13154 -22.28931 -21.47703 -20.59423 -19.48206 -18.75203 -17.41118 -17.07701 -16.68985 -16.55979 -15.99534 -15.33058 -14.97868 -14.71261 -14.51435 -14.25625 -14.19024 -13.85767 -13.47929 -13.27738 -13.11400 -12.95659 -12.56204 -12.46567 -12.39048 -12.08087 -11.88741 -11.87157 -11.79406 -11.50675 -11.38827 -11.35444 -11.16439 -11.01753 -10.96159 -10.79571 -10.67134 -10.36576 -10.28732 -10.10805 -9.79245 -9.65044 -9.58121 -8.86164 -8.83073 -8.11025 -6.85780 -5.69737 -2.98735 1.31839 2.22492 2.64014 3.25128 3.45877 3.50671 3.52827 3.66075 3.82268 4.03897 4.55732 4.61167 4.64968 4.69989 4.86865 4.97113 5.06544 5.11094 5.18370 5.34797 5.41907 5.49252 5.51353 5.53333 5.61409 5.63950 5.69097 5.69653 5.75932 5.78585 5.80090 5.81258 5.90141 5.92369 6.04502 6.05252 6.09761 6.15852 6.24960 6.29027 6.30429 6.39045 6.52731 6.58680 6.79204 7.06378 7.62480 7.73781 7.82346 8.47593 8.52692 9.59060 10.17654 10.52929 11.52634 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008023 B = 0.004592 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.245310 B = 6096.469208 C = 8328.697420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.576 5.576 3 C 0.604 3.396 4 O -0.543 6.543 5 C -0.055 4.055 6 C 0.004 3.996 7 O -0.196 6.196 8 C 0.196 3.804 9 C 0.034 3.966 10 C -0.138 4.138 11 C -0.147 4.147 12 C -0.141 4.141 13 N -0.444 5.444 14 C 0.163 3.837 15 H 0.100 0.900 16 C 0.149 3.851 17 N -0.727 5.727 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.157 4.157 27 C -0.178 4.178 28 C -0.170 4.170 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.228 0.772 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.023 0.977 43 H 0.030 0.970 44 H 0.385 0.615 45 H 0.253 0.747 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.093 0.907 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.105 8.496 15.303 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.305 5.305 3 C 0.392 3.608 4 O -0.422 6.422 5 C -0.175 4.175 6 C -0.070 4.070 7 O -0.082 6.082 8 C -0.013 4.013 9 C 0.033 3.967 10 C -0.196 4.196 11 C -0.204 4.204 12 C -0.199 4.199 13 N -0.173 5.173 14 C 0.059 3.941 15 H 0.118 0.882 16 C 0.020 3.980 17 N -0.372 5.372 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.177 4.177 27 C -0.215 4.215 28 C -0.208 4.208 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.244 0.756 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.219 0.781 45 H 0.063 0.937 46 H 0.122 0.878 47 H 0.114 0.886 48 H 0.107 0.893 49 H 0.111 0.889 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.986 7.893 15.246 18.935 hybrid contribution 0.428 0.355 -1.152 1.280 sum -7.558 8.248 14.094 17.994 Atomic orbital electron populations 1.21725 0.78438 1.01323 1.02726 1.47366 1.07610 1.04724 1.70845 1.16694 0.85805 0.81939 0.76410 1.90777 1.12919 1.86785 1.51688 1.21736 0.89646 0.95373 1.10720 1.25201 0.93422 0.87257 1.01098 1.84347 1.15334 1.39441 1.69085 1.26270 0.88671 0.85816 1.00546 1.19111 0.83663 0.95414 0.98522 1.21893 0.99636 1.03203 0.94831 1.21917 1.02830 0.92700 1.02992 1.21917 0.99572 1.02530 0.95861 1.70953 1.13384 1.16068 1.16919 1.20970 0.97907 0.82321 0.92863 0.88242 1.20933 0.97847 0.93543 0.85636 1.42286 1.78084 1.16106 1.00698 1.19201 1.35401 0.97724 0.84539 0.91256 1.24725 1.02148 0.96340 0.97652 1.69686 1.51679 1.09940 1.26577 0.86217 0.77725 0.78296 0.84117 1.21834 1.21855 1.20779 1.22546 0.97265 1.00640 0.97246 1.22994 0.99989 1.01860 0.96617 1.22912 1.03593 0.91057 1.03204 0.91683 0.92019 0.91115 0.75604 0.92352 0.91080 0.91022 0.91708 0.91068 0.91918 0.90813 0.91127 0.91942 0.95958 0.95191 0.78137 0.93663 0.87763 0.88620 0.89275 0.88871 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 8.06 59.85 0.48 2.15 16 2 N -0.58 -10.67 2.20 -175.21 -0.39 -11.05 16 3 C 0.60 12.00 7.66 -12.52 -0.10 11.90 16 4 O -0.54 -11.91 16.25 5.27 0.09 -11.82 16 5 C -0.05 -0.96 6.73 -83.02 -0.56 -1.52 16 6 C 0.00 0.06 11.95 29.96 0.36 0.42 16 7 O -0.20 -2.75 10.11 6.49 0.07 -2.68 16 8 C 0.20 2.70 6.44 -13.08 -0.08 2.62 16 9 C 0.03 0.34 0.99 -155.66 -0.15 0.19 16 10 C -0.14 -1.15 8.46 37.16 0.31 -0.83 16 11 C -0.15 -1.20 8.01 37.16 0.30 -0.90 16 12 C -0.14 -1.44 8.45 37.16 0.31 -1.13 16 13 N -0.44 -7.09 7.97 -7.65 -0.06 -7.15 16 14 C 0.16 2.98 2.30 -67.93 -0.16 2.82 16 15 H 0.10 2.05 6.74 -51.93 -0.35 1.70 16 16 C 0.15 3.12 5.28 -4.05 -0.02 3.10 16 17 N -0.73 -19.26 5.43 -59.91 -0.33 -19.59 16 18 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 19 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -29.16 13.06 55.49 0.72 -28.44 16 22 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 C -0.16 -2.28 5.09 -90.61 -0.46 -2.74 16 27 C -0.18 -2.31 10.18 -26.69 -0.27 -2.59 16 28 C -0.17 -2.15 9.89 -26.69 -0.26 -2.42 16 29 H 0.06 0.99 6.38 -51.93 -0.33 0.66 16 30 H 0.06 0.92 7.14 -51.93 -0.37 0.55 16 31 H 0.07 1.34 7.40 -51.93 -0.38 0.96 16 32 H 0.23 2.79 8.06 -52.49 -0.42 2.37 16 33 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.02 0.46 7.07 -51.93 -0.37 0.10 16 43 H 0.03 0.63 7.81 -51.93 -0.41 0.22 16 44 H 0.38 11.10 7.33 -40.82 -0.30 10.80 16 45 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.10 1.41 7.41 -51.93 -0.38 1.02 16 47 H 0.10 1.35 8.08 -51.93 -0.42 0.93 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.10 1.30 7.98 -51.93 -0.41 0.89 16 LS Contribution 407.98 15.07 6.15 6.15 Total: -1.00 -34.26 407.98 -7.67 -41.92 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -8.35 Total: 11.12 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.55 Total: 3.63 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: -0.05 Total: -66.23 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.15 Total: -14.50 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.26 -7.67 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676216063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.945 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds