Wall clock time and date at job start Tue Mar 31 2020 19:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34784 * 120.00183 * 2 1 4 4 O 1.21610 * 120.00008 * 174.84060 * 3 2 1 5 5 C 1.47418 * 119.99612 * 354.83629 * 3 2 1 6 6 C 1.36094 * 126.44556 * 185.04827 * 5 3 2 7 7 O 1.34260 * 106.94760 * 179.97438 * 6 5 3 8 8 C 1.34055 * 108.22506 * 359.97438 * 7 6 5 9 9 C 1.50703 * 125.37364 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47165 * 240.02502 * 9 8 7 11 11 C 1.53002 * 109.47238 * 0.02562 * 9 8 7 12 12 C 1.53001 * 109.47065 * 120.02646 * 9 8 7 13 13 N 1.29932 * 109.24654 * 359.72381 * 8 7 6 14 14 C 1.46505 * 120.00144 * 179.97438 * 2 1 3 15 15 H 1.08996 * 109.47043 * 175.03644 * 14 2 1 16 16 C 1.52998 * 109.46987 * 55.03841 * 14 2 1 17 17 N 1.46495 * 109.47244 * 54.99791 * 16 14 2 18 18 C 1.36939 * 120.00036 * 179.72419 * 17 16 14 19 19 H 1.08005 * 119.99836 * 0.02562 * 18 17 16 20 20 C 1.38809 * 120.00018 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00261 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99906 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46718 * 89.99925 * 22 20 18 24 24 H 1.48495 * 109.47078 * 209.99671 * 22 20 18 25 25 H 1.48498 * 109.47098 * 330.00138 * 22 20 18 26 26 C 1.53001 * 109.46874 * 295.03772 * 14 2 1 27 27 C 1.53006 * 117.49887 * 253.56659 * 26 14 2 28 28 C 1.53004 * 117.49587 * 184.91042 * 26 14 2 29 29 H 1.08997 * 109.46823 * 184.97050 * 1 2 3 30 30 H 1.08996 * 109.47080 * 304.97060 * 1 2 3 31 31 H 1.08992 * 109.46821 * 64.97086 * 1 2 3 32 32 H 1.07994 * 126.52447 * 359.97394 * 6 5 3 33 33 H 1.09008 * 109.47161 * 60.00007 * 10 9 8 34 34 H 1.08995 * 109.47705 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47325 * 300.00673 * 10 9 8 36 36 H 1.09004 * 109.46833 * 60.00335 * 11 9 8 37 37 H 1.08997 * 109.46967 * 179.97438 * 11 9 8 38 38 H 1.08999 * 109.46796 * 300.00011 * 11 9 8 39 39 H 1.09002 * 109.46617 * 59.99822 * 12 9 8 40 40 H 1.08997 * 109.47305 * 179.97438 * 12 9 8 41 41 H 1.08994 * 109.46982 * 300.00006 * 12 9 8 42 42 H 1.08998 * 109.46800 * 295.00018 * 16 14 2 43 43 H 1.09001 * 109.47005 * 175.00349 * 16 14 2 44 44 H 0.97001 * 119.99701 * 0.02562 * 17 16 14 45 45 H 0.96994 * 120.00231 * 180.02562 * 21 20 18 46 46 H 1.08996 * 115.55298 * 39.24085 * 26 14 2 47 47 H 1.09002 * 117.49545 * 0.02562 * 27 26 14 48 48 H 1.08997 * 117.49872 * 145.01861 * 27 26 14 49 49 H 1.08997 * 117.49707 * 214.97611 * 28 26 14 50 50 H 1.08994 * 117.49858 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3514 1.1693 0.0947 5 6 1.4063 2.4413 -0.1149 6 6 1.9545 3.6821 -0.2248 7 8 0.9366 4.5540 -0.3048 8 6 -0.2115 3.8645 -0.2460 9 6 -1.5930 4.4640 -0.3032 10 6 -2.3517 4.1202 0.9802 11 6 -1.4842 5.9841 -0.4396 12 6 -2.3458 3.8964 -1.5082 13 7 0.0548 2.5974 -0.1384 14 6 2.1976 -1.2687 0.0006 15 1 3.2658 -1.0715 -0.0884 16 6 1.7367 -2.1242 -1.1812 17 7 1.8880 -1.3629 -2.4236 18 6 1.5419 -1.9303 -3.6209 19 1 1.1569 -2.9390 -3.6491 20 6 1.6858 -1.2090 -4.7981 21 7 2.1554 0.0200 -4.7637 22 14 1.2142 -1.9833 -6.4314 23 1 -0.2135 -1.6958 -6.7215 24 1 2.0624 -1.4172 -7.5108 25 1 1.4188 -3.4524 -6.3601 26 6 1.9238 -2.0150 1.3079 27 6 3.0467 -2.0561 2.3464 28 6 2.6913 -3.3158 1.5527 29 1 -0.3633 -1.0238 0.0890 30 1 -0.3633 0.5890 0.8421 31 1 -0.3633 0.4348 -0.9311 32 1 3.0077 3.9201 -0.2440 33 1 -1.8153 4.5246 1.8388 34 1 -3.3510 4.5534 0.9388 35 1 -2.4292 3.0373 1.0775 36 1 -0.9437 6.2290 -1.3540 37 1 -2.4833 6.4176 -0.4814 38 1 -0.9479 6.3884 0.4189 39 1 -2.4233 2.8135 -1.4109 40 1 -3.3451 4.3297 -1.5493 41 1 -1.8053 4.1414 -2.4225 42 1 0.6897 -2.3957 -1.0467 43 1 2.3428 -3.0287 -1.2332 44 1 2.2376 -0.4584 -2.3986 45 1 2.2556 0.5241 -5.5863 46 1 0.8996 -1.9581 1.6762 47 1 3.9803 -1.5511 2.0983 48 1 2.7612 -2.0264 3.3978 49 1 2.1720 -4.1144 2.0825 50 1 3.3908 -3.6401 0.7823 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676216063.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:32 Heat of formation + Delta-G solvation = 4.856979 kcal Electronic energy + Delta-G solvation = -30504.428105 eV Core-core repulsion = 26534.018080 eV Total energy + Delta-G solvation = -3970.410025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -44.49745 -41.10465 -38.79362 -37.92503 -36.68072 -36.10923 -35.40753 -33.15332 -31.00741 -29.88956 -28.26790 -28.20375 -27.81101 -26.31753 -24.92025 -24.22504 -23.53504 -22.90688 -21.80141 -20.76758 -20.00047 -19.17889 -18.69304 -17.88958 -17.87687 -17.31102 -16.65184 -16.51356 -16.23577 -15.77724 -15.48678 -15.28225 -15.04977 -14.93022 -14.84437 -14.62661 -14.47807 -13.92977 -13.65562 -13.27246 -13.24044 -13.17553 -13.08257 -12.89177 -12.73766 -12.61043 -12.57869 -12.45121 -12.35030 -12.23377 -12.12989 -11.96091 -11.94358 -11.80698 -11.64530 -11.40403 -11.13101 -10.97129 -10.90576 -10.10879 -9.57617 -9.03037 -7.95644 -5.25935 0.06169 0.99357 1.43543 1.46227 1.52855 1.54756 1.86338 2.23402 2.53018 2.72759 2.92051 3.37698 3.48260 3.61708 3.69489 3.90151 3.95274 3.96092 4.06503 4.07561 4.11851 4.26452 4.33232 4.42611 4.45072 4.55391 4.58694 4.72810 4.73970 4.76322 4.78600 4.84978 4.87234 4.88791 4.95895 4.96530 5.02435 5.04195 5.06494 5.14180 5.26053 5.28956 5.29127 5.35686 5.39780 5.45359 5.59381 6.23258 6.27176 6.49906 7.02486 7.29795 8.04252 8.28645 9.27803 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008023 B = 0.004592 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.245310 B = 6096.469208 C = 8328.697420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.577 5.577 3 C 0.594 3.406 4 O -0.577 6.577 5 C -0.091 4.091 6 C 0.014 3.986 7 O -0.191 6.191 8 C 0.200 3.800 9 C 0.032 3.968 10 C -0.133 4.133 11 C -0.143 4.143 12 C -0.139 4.139 13 N -0.461 5.461 14 C 0.171 3.829 15 H 0.069 0.931 16 C 0.150 3.850 17 N -0.741 5.741 18 C -0.242 4.242 19 H 0.080 0.920 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.976 3.024 23 H -0.285 1.285 24 H -0.298 1.298 25 H -0.266 1.266 26 C -0.168 4.168 27 C -0.171 4.171 28 C -0.156 4.156 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.248 0.752 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.099 0.901 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.043 0.957 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.368 0.632 45 H 0.248 0.752 46 H 0.121 0.879 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.122 0.878 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.214 8.183 16.474 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.305 5.305 3 C 0.382 3.618 4 O -0.458 6.458 5 C -0.210 4.210 6 C -0.060 4.060 7 O -0.077 6.077 8 C -0.010 4.010 9 C 0.031 3.969 10 C -0.191 4.191 11 C -0.200 4.200 12 C -0.197 4.197 13 N -0.190 5.190 14 C 0.067 3.933 15 H 0.087 0.913 16 C 0.023 3.977 17 N -0.383 5.383 18 C -0.374 4.374 19 H 0.098 0.902 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.212 1.212 24 H -0.225 1.225 25 H -0.191 1.191 26 C -0.188 4.188 27 C -0.208 4.208 28 C -0.193 4.193 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.264 0.736 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.200 0.800 45 H 0.057 0.943 46 H 0.139 0.861 47 H 0.096 0.904 48 H 0.132 0.868 49 H 0.140 0.860 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.128 7.517 16.453 20.731 hybrid contribution 1.070 0.462 -1.488 1.890 sum -9.058 7.979 14.965 19.227 Atomic orbital electron populations 1.21672 0.77249 1.02203 1.01919 1.47485 1.08325 1.04554 1.70180 1.17095 0.85715 0.83017 0.75938 1.90734 1.14239 1.87429 1.53434 1.21664 0.90702 0.95240 1.13387 1.25606 0.94466 0.86685 0.99272 1.84383 1.15330 1.39095 1.68914 1.27250 0.89837 0.85420 0.98456 1.19448 0.81483 0.96592 0.99394 1.21888 1.00888 1.02591 0.93694 1.21925 1.04511 0.90992 1.02615 1.21920 1.01145 1.01499 0.95100 1.70902 1.12545 1.17372 1.18159 1.20795 0.96079 0.82343 0.94076 0.91258 1.21091 0.98454 0.93564 0.84606 1.42493 1.77957 1.15781 1.02098 1.19647 1.34170 0.98019 0.85517 0.90244 1.25602 1.02889 0.96895 1.01407 1.69877 1.53661 1.11628 1.27060 0.85106 0.77188 0.78049 0.79208 1.21239 1.22473 1.19112 1.22429 0.98669 1.01934 0.95730 1.23021 0.98493 1.01758 0.97535 1.23013 1.02585 0.91075 1.02649 0.90211 0.90314 0.93936 0.73577 0.92094 0.88157 0.92330 0.92763 0.88248 0.91548 0.92798 0.87845 0.93754 0.94750 0.94657 0.80030 0.94290 0.86095 0.90377 0.86829 0.86000 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.74 8.06 127.77 1.03 4.77 16 2 N -0.58 -22.03 2.20 -826.48 -1.82 -23.85 16 3 C 0.59 24.74 7.66 86.66 0.66 25.40 16 4 O -0.58 -26.77 16.25 -4.06 -0.07 -26.84 16 5 C -0.09 -3.33 6.73 40.41 0.27 -3.06 16 6 C 0.01 0.43 11.95 67.32 0.80 1.23 16 7 O -0.19 -5.35 10.11 0.30 0.00 -5.35 16 8 C 0.20 5.50 6.44 88.39 0.57 6.07 16 9 C 0.03 0.60 0.99 -52.93 -0.05 0.55 16 10 C -0.13 -1.93 8.46 71.98 0.61 -1.32 16 11 C -0.14 -2.02 8.01 71.98 0.58 -1.44 16 12 C -0.14 -2.71 8.45 71.98 0.61 -2.11 16 13 N -0.46 -15.09 7.97 -293.03 -2.34 -17.42 16 14 C 0.17 6.37 2.30 44.99 0.10 6.48 16 15 H 0.07 3.01 6.74 -2.39 -0.02 3.00 16 16 C 0.15 6.33 5.28 86.38 0.46 6.78 16 17 N -0.74 -40.24 5.43 -343.46 -1.87 -42.11 16 18 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 21 N -0.97 -62.76 13.06 21.65 0.28 -62.47 16 22 Si 0.98 47.62 29.55 68.60 2.03 49.65 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 C -0.17 -4.67 5.09 -10.79 -0.05 -4.72 16 27 C -0.17 -4.23 10.18 30.62 0.31 -3.91 16 28 C -0.16 -3.63 9.89 30.62 0.30 -3.32 16 29 H 0.08 2.37 6.38 -2.39 -0.02 2.36 16 30 H 0.08 2.34 7.14 -2.39 -0.02 2.33 16 31 H 0.04 1.67 7.40 -2.39 -0.02 1.65 16 32 H 0.25 6.24 8.06 -2.91 -0.02 6.21 16 33 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.03 1.39 7.07 -2.39 -0.02 1.37 16 43 H 0.04 1.47 7.81 -2.39 -0.02 1.45 16 44 H 0.37 22.23 7.33 -92.71 -0.68 21.55 16 45 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.12 2.98 7.41 -2.39 -0.02 2.96 16 47 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 48 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.09 2.25 7.98 -2.39 -0.02 2.23 16 Total: -1.00 -76.93 407.98 3.98 -72.95 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: 0.25 Total: 41.31 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 7.51 Total: 14.13 kcal Atomic # 7 Polarization: -140.12 SS G_CDS: -5.74 Total: -145.85 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.06 Total: -32.19 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -76.93 3.98 -72.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676216063.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.805 kcal (2) G-P(sol) polarization free energy of solvation -76.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds