Wall clock time and date at job start Tue Mar 31 2020 19:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47162 * 106.78463 * 3 2 1 5 5 C 1.52999 * 109.47047 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46550 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46550 * 179.97438 * 6 5 4 8 8 C 1.50709 * 109.47193 * 179.97438 * 7 6 5 9 9 O 1.21277 * 119.99544 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00048 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99732 * 179.97438 * 10 8 7 12 12 H 1.09003 * 110.64777 * 323.30511 * 11 10 8 13 13 C 1.54596 * 110.72526 * 86.46252 * 11 10 8 14 14 C 1.53989 * 105.14316 * 140.31381 * 13 11 10 15 15 N 1.47894 * 107.05835 * 1.22251 * 14 13 11 16 16 C 1.46902 * 111.00050 * 214.15441 * 15 14 13 17 17 C 1.50699 * 109.46892 * 176.63888 * 16 15 14 18 18 O 1.21289 * 120.00552 * 6.13859 * 17 16 15 19 19 N 1.34777 * 119.99670 * 186.13614 * 17 16 15 20 20 C 1.37100 * 120.00175 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00005 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00031 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00054 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99853 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47169 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47082 * 119.99948 * 24 22 20 27 27 H 1.48500 * 109.47215 * 240.00153 * 24 22 20 28 28 C 1.48528 * 105.82068 * 334.67131 * 15 14 13 29 29 H 4.44651 * 5.63289 * 180.02562 * 4 1 2 30 30 H 1.08997 * 109.46936 * 346.78553 * 3 2 1 31 31 H 1.09000 * 109.46720 * 226.78371 * 3 2 1 32 32 H 1.09006 * 109.46843 * 59.99688 * 4 3 2 33 33 H 1.09006 * 109.46628 * 300.00233 * 4 3 2 34 34 H 1.08997 * 109.47090 * 60.00066 * 5 4 3 35 35 H 1.09000 * 109.46681 * 299.99813 * 5 4 3 36 36 H 1.08997 * 109.47516 * 60.00148 * 6 5 4 37 37 H 1.09000 * 109.47331 * 299.99237 * 6 5 4 38 38 H 1.08999 * 109.47992 * 59.99968 * 7 6 5 39 39 H 1.09006 * 109.47500 * 299.99402 * 7 6 5 40 40 H 0.96998 * 120.00315 * 0.02562 * 10 8 7 41 41 H 1.08998 * 110.30463 * 21.39173 * 13 11 10 42 42 H 1.09004 * 110.38801 * 259.27818 * 13 11 10 43 43 H 1.08995 * 109.91431 * 241.86889 * 14 13 11 44 44 H 1.09007 * 110.08204 * 120.66963 * 14 13 11 45 45 H 1.08997 * 109.47090 * 56.64013 * 16 15 14 46 46 H 1.09001 * 109.46906 * 296.64200 * 16 15 14 47 47 H 0.97006 * 120.00292 * 0.02562 * 19 17 16 48 48 H 0.97002 * 119.99826 * 179.97438 * 23 22 20 49 49 H 1.09005 * 110.66641 * 157.64500 * 28 15 14 50 50 H 1.09000 * 110.66827 * 280.76869 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.4174 -1.3811 5 6 4.6859 0.4175 -1.3812 6 6 5.1955 0.8349 -2.7621 7 6 6.7255 0.8356 -2.7621 8 6 7.2278 1.2461 -4.1224 9 8 6.4395 1.5115 -5.0051 10 7 8.5528 1.3183 -4.3580 11 6 9.0409 1.7169 -5.6805 12 1 8.3984 1.3156 -6.4644 13 6 9.1377 3.2561 -5.7870 14 6 10.4365 3.5243 -6.5696 15 7 11.0179 2.2076 -6.9096 16 6 12.4859 2.2605 -6.8940 17 6 13.0409 0.8855 -7.1630 18 8 12.2938 -0.0229 -7.4592 19 7 14.3676 0.6652 -7.0746 20 6 14.8727 -0.5856 -7.3199 21 1 14.2075 -1.3942 -7.5843 22 6 16.2404 -0.8128 -7.2282 23 7 17.0498 0.1713 -6.9068 24 14 16.9286 -2.5168 -7.5631 25 1 15.8174 -3.4415 -7.9028 26 1 17.8831 -2.4508 -8.6988 27 1 17.6323 -3.0130 -6.3532 28 6 10.5083 1.2628 -5.8832 29 1 -1.0500 0.0001 0.0002 30 1 3.0098 -0.9996 0.2349 31 1 3.0090 0.7045 0.7490 32 1 2.7920 1.4178 -1.6160 33 1 2.7927 -0.2865 -2.1300 34 1 5.0492 -0.5829 -1.1465 35 1 5.0492 1.1211 -0.6322 36 1 4.8322 1.8355 -2.9964 37 1 4.8322 0.1316 -3.5114 38 1 7.0895 -0.1647 -2.5276 39 1 7.0886 1.5392 -2.0129 40 1 9.1832 1.1057 -3.6522 41 1 9.1957 3.7010 -4.7937 42 1 8.2800 3.6540 -6.3295 43 1 11.1332 4.0892 -5.9503 44 1 10.2162 4.0796 -7.4814 45 1 12.8267 2.6052 -5.9177 46 1 12.8328 2.9495 -7.6640 47 1 14.9652 1.3916 -6.8374 48 1 18.0046 0.0125 -6.8424 49 1 10.5464 0.2375 -6.2514 50 1 11.0729 1.3608 -4.9559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713829021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:55 Heat of formation + Delta-G solvation = -36.793414 kcal Electronic energy + Delta-G solvation = -27393.953572 eV Core-core repulsion = 23421.737450 eV Total energy + Delta-G solvation = -3972.216122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.14345 -38.94384 -37.52966 -36.80873 -34.49250 -34.20345 -33.86972 -31.73288 -31.30822 -30.76450 -28.63708 -27.53638 -26.41594 -24.25605 -23.44857 -21.52260 -21.28683 -20.84273 -20.14174 -19.19790 -18.41933 -17.89473 -17.17597 -16.56104 -16.40478 -16.11852 -15.46581 -15.24061 -14.84191 -14.62583 -14.42737 -14.30448 -14.03808 -13.91214 -13.81734 -13.52401 -13.20360 -12.77569 -12.74284 -12.42427 -12.32735 -11.92373 -11.81522 -11.70576 -11.53686 -11.49850 -11.42278 -11.30363 -11.20658 -10.91273 -10.89705 -10.63630 -10.52212 -10.47791 -10.36467 -10.25439 -9.89727 -9.53065 -9.11243 -8.46571 -8.07130 -7.96409 -6.44981 -3.85780 2.42970 2.46399 2.55788 3.02391 3.13905 3.24986 3.32054 3.86588 3.94509 4.05232 4.26514 4.46065 4.52554 4.53377 4.64710 4.77380 4.82699 4.84678 5.01229 5.04049 5.14058 5.16962 5.20134 5.22332 5.34894 5.39695 5.42903 5.43702 5.46082 5.61197 5.65023 5.68068 5.77909 5.80241 5.87569 5.89311 5.94760 6.04899 6.07596 6.11650 6.23428 6.41208 6.47285 7.11193 7.18301 7.24218 7.42298 7.52502 8.03110 8.15120 8.58161 9.14999 9.50760 10.02268 10.72772 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.001578 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.505351 B =17740.868022 C =18923.023920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.186 4.186 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.141 4.141 8 C 0.512 3.488 9 O -0.540 6.540 10 N -0.723 5.723 11 C 0.139 3.861 12 H 0.102 0.898 13 C -0.138 4.138 14 C 0.034 3.966 15 N -0.490 5.490 16 C 0.038 3.962 17 C 0.441 3.559 18 O -0.578 6.578 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.037 3.963 29 H 0.216 0.784 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.400 0.600 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.093 0.907 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.113 0.887 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.361 5.600 14.533 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.186 4.186 3 C -0.051 4.051 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.142 4.142 7 C -0.181 4.181 8 C 0.298 3.702 9 O -0.417 6.417 10 N -0.374 5.374 11 C 0.034 3.966 12 H 0.120 0.880 13 C -0.178 4.178 14 C -0.094 4.094 15 N -0.215 5.215 16 C -0.094 4.094 17 C 0.227 3.773 18 O -0.462 6.462 19 N -0.200 5.200 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.091 4.091 29 H 0.233 0.767 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.234 0.766 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.111 0.889 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.131 0.869 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.349 5.013 13.168 26.420 hybrid contribution 1.406 -0.056 1.168 1.829 sum -20.943 4.957 14.337 25.859 Atomic orbital electron populations 1.24940 0.96044 1.01333 1.00883 1.23231 0.94708 1.00267 1.00417 1.18797 0.84593 1.02955 0.98795 1.21548 0.95522 1.02398 0.95803 1.21627 0.94787 1.01983 0.97401 1.21333 0.92795 1.03139 0.96964 1.21706 0.98036 1.03637 0.94768 1.20743 0.82136 0.76877 0.90418 1.90705 1.55213 1.49079 1.46725 1.46065 1.07173 1.69887 1.14314 1.21940 0.95948 0.93941 0.84783 0.88029 1.22779 0.98139 0.96439 1.00402 1.22915 0.95022 0.92171 0.99322 1.64481 1.06354 1.05079 1.45539 1.22100 0.88116 0.98131 1.01040 1.19708 0.83249 0.89384 0.84986 1.90494 1.57817 1.45063 1.52858 1.41873 1.05352 1.11922 1.60812 1.19755 0.91419 0.87802 1.43866 0.87828 1.25257 0.95934 0.99416 0.97269 1.69618 1.04448 1.31832 1.48372 0.85810 0.78926 0.81768 0.77909 1.19196 1.20716 1.20788 1.23529 0.91562 1.00396 0.93650 0.76724 0.89527 0.89574 0.91446 0.91389 0.91546 0.91648 0.91163 0.91043 0.88782 0.88967 0.76568 0.91433 0.90607 0.93781 0.90143 0.93397 0.88929 0.77493 0.91909 0.86890 0.94046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.55 19.25 29.55 0.57 -0.98 16 2 C -0.19 -1.47 13.34 -37.12 -0.50 -1.96 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.25 16 4 C -0.12 -0.69 5.17 -26.73 -0.14 -0.83 16 5 C -0.12 -0.64 5.21 -26.73 -0.14 -0.78 16 6 C -0.10 -0.79 4.50 -26.73 -0.12 -0.91 16 7 C -0.14 -1.02 5.70 -27.88 -0.16 -1.18 16 8 C 0.51 5.79 7.83 -10.98 -0.09 5.70 16 9 O -0.54 -8.30 15.71 5.56 0.09 -8.21 16 10 N -0.72 -7.76 5.14 -52.00 -0.27 -8.03 16 11 C 0.14 1.86 3.35 -66.07 -0.22 1.64 16 12 H 0.10 1.59 7.70 -51.93 -0.40 1.19 16 13 C -0.14 -1.66 6.67 -25.38 -0.17 -1.83 16 14 C 0.03 0.44 6.70 -2.76 -0.02 0.42 16 15 N -0.49 -8.09 5.11 -231.90 -1.18 -9.28 16 16 C 0.04 0.66 5.31 -4.98 -0.03 0.64 16 17 C 0.44 10.16 7.41 -10.99 -0.08 10.08 16 18 O -0.58 -15.18 13.87 5.55 0.08 -15.11 16 19 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 20 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 24 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 28 C 0.04 0.58 5.19 -1.90 -0.01 0.57 16 29 H 0.22 0.85 7.80 -54.09 -0.42 0.43 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.22 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.40 3.33 8.53 -40.82 -0.35 2.98 16 41 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.04 0.51 7.68 -51.93 -0.40 0.11 16 44 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 45 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 46 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 47 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 49 H 0.11 2.16 6.43 -51.93 -0.33 1.82 16 50 H 0.04 0.61 7.88 -51.93 -0.41 0.20 16 LS Contribution 416.73 15.07 6.28 6.28 Total: -1.00 -33.41 416.73 -9.34 -42.74 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -8.47 Total: 10.80 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.50 Total: 2.50 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.79 Total: -54.73 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.16 Total: -23.32 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.41 -9.34 -42.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713829021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.950 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds