Wall clock time and date at job start Tue Mar 31 2020 20:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47277 * 2 1 4 4 C 1.32994 * 120.00086 * 125.23107 * 3 2 1 5 5 C 1.50705 * 119.99889 * 354.83307 * 4 3 2 6 6 C 1.47101 * 120.00374 * 174.82921 * 4 3 2 7 7 O 1.21613 * 120.00173 * 255.22016 * 6 4 3 8 8 N 1.34777 * 119.99529 * 75.48714 * 6 4 3 9 9 C 1.46576 * 125.30076 * 185.03824 * 8 6 4 10 10 C 1.53263 * 108.18815 * 181.97750 * 9 8 6 11 11 H 1.09001 * 112.58712 * 138.04432 * 10 9 8 12 12 C 1.54587 * 109.83013 * 264.41730 * 10 9 8 13 13 N 1.48551 * 103.18656 * 149.27170 * 12 10 9 14 14 C 1.46902 * 110.99726 * 200.04222 * 13 12 10 15 15 C 1.50707 * 109.46713 * 169.99822 * 14 13 12 16 16 O 1.21284 * 120.00320 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99661 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99763 * 179.97438 * 17 15 14 19 19 H 1.08000 * 120.00455 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99781 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00227 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99863 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47284 * 90.00007 * 22 20 18 24 24 H 1.48500 * 109.46798 * 210.00362 * 22 20 18 25 25 H 1.48495 * 109.46945 * 329.99807 * 22 20 18 26 26 C 1.47842 * 105.86157 * 320.57831 * 13 12 10 27 27 C 1.54142 * 107.25492 * 24.96700 * 26 13 12 28 28 H 1.08999 * 112.88633 * 122.85404 * 27 26 13 29 29 C 1.46603 * 125.30819 * 4.73491 * 8 6 4 30 30 H 1.08996 * 109.46913 * 59.99679 * 1 2 3 31 31 H 1.08994 * 109.47308 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46914 * 299.99990 * 1 2 3 33 33 H 1.09004 * 109.47275 * 239.99977 * 2 1 3 34 34 H 1.08996 * 109.46913 * 120.00321 * 2 1 3 35 35 H 1.08000 * 119.99912 * 305.22674 * 3 2 1 36 36 H 1.08998 * 109.46834 * 184.91324 * 5 4 3 37 37 H 1.09007 * 109.46874 * 304.91042 * 5 4 3 38 38 H 1.09001 * 109.47296 * 64.90902 * 5 4 3 39 39 H 1.09010 * 109.73226 * 301.66878 * 9 8 6 40 40 H 1.08996 * 109.73717 * 62.30377 * 9 8 6 41 41 H 1.09000 * 110.67282 * 267.69686 * 12 10 9 42 42 H 1.08997 * 110.67201 * 30.67552 * 12 10 9 43 43 H 1.09001 * 109.47090 * 289.99373 * 14 13 12 44 44 H 1.08998 * 109.47226 * 49.99839 * 14 13 12 45 45 H 0.96999 * 119.99702 * 359.97438 * 17 15 14 46 46 H 0.97005 * 120.00430 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.88006 * 144.37498 * 26 13 12 48 48 H 1.09004 * 109.88575 * 265.39180 * 26 13 12 49 49 H 1.09000 * 109.91377 * 281.51313 * 29 8 6 50 50 H 1.09001 * 109.91254 * 42.79359 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8805 1.8262 0.9408 5 6 3.2487 0.9016 2.0725 6 6 3.4592 3.1771 0.8767 7 8 4.6148 3.3277 0.5289 8 7 2.7104 4.2474 1.2087 9 6 3.1317 5.6461 1.0882 10 6 2.0008 6.5338 1.6195 11 1 2.3678 7.3580 2.2312 12 6 1.1145 7.0120 0.4467 13 7 -0.2273 7.1477 1.0695 14 6 -1.2849 7.1308 0.0500 15 6 -2.6292 7.0226 0.7226 16 8 -2.6993 6.9648 1.9321 17 7 -3.7535 6.9901 -0.0199 18 6 -4.9764 6.8912 0.5919 19 1 -5.0389 6.8398 1.6688 20 6 -6.1355 6.8583 -0.1736 21 7 -6.0596 6.9214 -1.4840 22 14 -7.8019 6.7242 0.6600 23 1 -8.3244 8.0849 0.9435 24 1 -8.7464 6.0075 -0.2341 25 1 -7.6593 5.9735 1.9333 26 6 -0.3625 6.0005 1.9921 27 6 1.0612 5.5641 2.3907 28 1 1.2231 5.5794 3.4685 29 6 1.3453 4.1943 1.7407 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.7038 2.1097 -0.7640 36 1 3.8796 1.4330 2.7851 37 1 2.3422 0.5612 2.5731 38 1 3.7905 0.0421 1.6779 39 1 4.0352 5.8103 1.6756 40 1 3.3248 5.8835 0.0421 41 1 1.4624 7.9734 0.0687 42 1 1.0982 6.2694 -0.3509 43 1 -1.2430 8.0513 -0.5323 44 1 -1.1392 6.2760 -0.6105 45 1 -3.6974 7.0368 -0.9872 46 1 -6.8688 6.8980 -2.0184 47 1 -0.9198 6.3018 2.8791 48 1 -0.8776 5.1807 1.4914 49 1 0.6384 4.0106 0.9316 50 1 1.2692 3.4060 2.4898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724619607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:09 Heat of formation + Delta-G solvation = -69.282541 kcal Electronic energy + Delta-G solvation = -29625.701957 eV Core-core repulsion = 25652.077001 eV Total energy + Delta-G solvation = -3973.624956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.92387 -40.55189 -39.57122 -37.20126 -36.84916 -35.83488 -33.38496 -33.08930 -32.36451 -31.71092 -28.92367 -28.04410 -27.31212 -26.66037 -25.43566 -23.79786 -22.39863 -21.47508 -21.29666 -20.69688 -19.80397 -19.37304 -18.15770 -17.66391 -17.44183 -16.78309 -16.70735 -16.45183 -16.30839 -15.85098 -15.50748 -15.27935 -15.12678 -15.04003 -14.56477 -14.23514 -14.12985 -13.97660 -13.88384 -13.58347 -13.48520 -13.33790 -13.20891 -13.08557 -12.97923 -12.79116 -12.73079 -12.41615 -12.37837 -12.32587 -12.14531 -12.01491 -11.83741 -11.77338 -11.73403 -11.46609 -10.96685 -10.22197 -10.00540 -9.99203 -9.82521 -9.31506 -8.46272 -5.94738 0.70970 1.38211 1.42478 1.42928 1.54734 1.93841 2.04416 2.28713 2.81014 3.11589 3.21248 3.26726 3.51515 3.57486 3.67737 3.92724 4.04336 4.10794 4.17398 4.23369 4.23963 4.28499 4.37660 4.43862 4.45495 4.51235 4.57954 4.62143 4.67119 4.68441 4.73137 4.74505 4.76242 4.88608 4.99312 5.00309 5.04929 5.12085 5.15387 5.23246 5.31052 5.32386 5.41845 5.49638 5.57224 5.84848 5.94316 6.08036 6.30812 6.60283 6.93365 7.13068 7.55773 8.10773 8.71151 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012130 B = 0.002861 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.719851 B = 9784.086416 C =11331.932576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.102 4.102 4 C -0.179 4.179 5 C -0.099 4.099 6 C 0.568 3.432 7 O -0.581 6.581 8 N -0.607 5.607 9 C 0.113 3.887 10 C -0.084 4.084 11 H 0.125 0.875 12 C 0.040 3.960 13 N -0.509 5.509 14 C 0.048 3.952 15 C 0.440 3.560 16 O -0.612 6.612 17 N -0.573 5.573 18 C -0.330 4.330 19 H 0.081 0.919 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.271 1.271 26 C 0.065 3.935 27 C -0.100 4.100 28 H 0.117 0.883 29 C 0.112 3.888 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.045 0.955 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.071 0.929 48 H 0.029 0.971 49 H 0.061 0.939 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.638 -10.537 2.652 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.121 4.121 4 C -0.182 4.182 5 C -0.155 4.155 6 C 0.359 3.641 7 O -0.461 6.461 8 N -0.339 5.339 9 C -0.010 4.010 10 C -0.103 4.103 11 H 0.143 0.857 12 C -0.087 4.087 13 N -0.233 5.233 14 C -0.084 4.084 15 C 0.228 3.772 16 O -0.498 6.498 17 N -0.210 5.210 18 C -0.460 4.460 19 H 0.099 0.901 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.196 1.196 26 C -0.063 4.063 27 C -0.120 4.120 28 H 0.135 0.865 29 C -0.011 4.011 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.064 0.936 43 H 0.127 0.873 44 H 0.082 0.918 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.090 0.910 48 H 0.047 0.953 49 H 0.079 0.921 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.014 -10.056 3.372 20.049 hybrid contribution -1.052 -0.385 -1.004 1.504 sum 15.963 -10.441 2.367 19.220 Atomic orbital electron populations 1.21712 0.94492 1.02632 1.01854 1.20781 0.96349 0.91962 1.04249 1.23438 0.93480 0.98793 0.96392 1.21417 1.01519 0.93784 1.01470 1.20690 1.02665 0.97685 0.94493 1.18693 0.84561 0.85111 0.75756 1.90781 1.18479 1.86880 1.50009 1.48370 1.16198 1.06238 1.63098 1.21728 0.97756 0.79779 1.01693 1.22742 0.93388 0.97718 0.96478 0.85675 1.23432 0.87802 1.01909 0.95555 1.64608 1.01307 1.42238 1.15152 1.21986 0.89039 1.03350 0.93993 1.20662 0.86413 0.82409 0.87759 1.90479 1.87503 1.56324 1.15476 1.41930 1.05067 1.64790 1.09263 1.19656 0.83658 1.49375 0.93285 0.90113 1.26022 1.02872 0.96390 0.95966 1.69671 1.31175 1.50367 1.05024 0.84949 0.76982 0.78591 0.77978 1.19798 1.19682 1.19561 1.22761 0.94910 0.91025 0.97639 1.23055 0.94209 0.93287 1.01454 0.86487 1.22262 0.82066 0.98684 0.98041 0.93195 0.91021 0.92914 0.89471 0.89211 0.87838 0.92588 0.88937 0.89753 0.90660 0.91183 0.88028 0.93644 0.87290 0.91765 0.77138 0.91352 0.91035 0.95268 0.92072 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.90 71.98 0.71 -1.35 16 2 C -0.10 -1.25 6.21 29.85 0.19 -1.06 16 3 C -0.10 -1.81 9.18 24.52 0.23 -1.58 16 4 C -0.18 -3.54 4.76 -18.70 -0.09 -3.63 16 5 C -0.10 -1.44 8.55 71.24 0.61 -0.83 16 6 C 0.57 14.55 7.13 86.57 0.62 15.17 16 7 O -0.58 -19.25 17.42 -4.07 -0.07 -19.32 16 8 N -0.61 -13.51 3.31 -822.63 -2.72 -16.23 16 9 C 0.11 2.27 6.26 86.45 0.54 2.81 16 10 C -0.08 -1.60 4.02 -9.31 -0.04 -1.64 16 11 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 12 C 0.04 0.89 5.69 86.52 0.49 1.38 16 13 N -0.51 -15.45 5.26 -888.09 -4.67 -20.12 16 14 C 0.05 1.60 5.48 85.56 0.47 2.07 16 15 C 0.44 20.20 7.34 87.66 0.64 20.84 16 16 O -0.61 -31.98 13.37 -3.04 -0.04 -32.02 16 17 N -0.57 -28.73 5.29 -306.98 -1.62 -30.35 16 18 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 19 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 20 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 21 N -0.92 -49.08 13.05 21.66 0.28 -48.79 16 22 Si 0.99 42.13 29.55 68.60 2.03 44.16 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 C 0.06 1.97 4.60 86.51 0.40 2.37 16 27 C -0.10 -2.15 4.19 -9.12 -0.04 -2.19 16 28 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 29 C 0.11 2.29 5.84 86.79 0.51 2.80 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 0.93 5.86 -2.39 -0.01 0.92 16 35 H 0.10 2.01 8.05 -2.91 -0.02 1.98 16 36 H 0.05 0.89 7.99 -2.39 -0.02 0.87 16 37 H 0.09 1.01 7.67 -2.38 -0.02 0.99 16 38 H 0.08 1.04 7.90 -2.39 -0.02 1.03 16 39 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.07 1.43 7.75 -2.39 -0.02 1.41 16 41 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.05 1.01 7.61 -2.39 -0.02 0.99 16 43 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.06 1.96 7.90 -2.39 -0.02 1.94 16 45 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 46 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 47 H 0.07 2.66 6.76 -2.39 -0.02 2.65 16 48 H 0.03 0.97 6.55 -2.38 -0.02 0.95 16 49 H 0.06 1.37 7.19 -2.39 -0.02 1.35 16 50 H 0.09 1.61 7.91 -2.39 -0.02 1.59 16 Total: -1.00 -69.92 398.69 -0.09 -70.02 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: 0.21 Total: 35.21 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 6.52 Total: 17.45 kcal Atomic # 7 Polarization: -106.77 SS G_CDS: -8.73 Total: -115.50 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.11 Total: -51.34 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -69.92 -0.09 -70.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724619607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.733 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds