Wall clock time and date at job start Tue Mar 31 2020 18:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 H 1.09002 * 109.47000 * 304.99745 * 3 2 1 5 5 C 1.53002 * 109.47581 * 184.99868 * 3 2 1 6 6 N 1.46905 * 109.47429 * 64.99737 * 3 2 1 7 7 C 1.46892 * 110.99950 * 66.04481 * 6 3 2 8 8 C 1.46899 * 111.00147 * 190.00732 * 6 3 2 9 9 C 1.53003 * 109.47096 * 169.99910 * 8 6 3 10 10 N 1.46498 * 109.47040 * 179.97438 * 9 8 6 11 11 C 1.34774 * 119.99894 * 180.02562 * 10 9 8 12 12 O 1.21591 * 120.00083 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.39946 * 120.00259 * 175.49638 * 13 11 10 15 15 C 1.38958 * 120.03606 * 214.85137 * 14 13 11 16 16 C 1.38161 * 120.06874 * 179.73997 * 15 14 13 17 17 C 1.38171 * 120.13762 * 0.55211 * 16 15 14 18 18 C 1.38912 * 120.06500 * 359.69483 * 17 16 15 19 19 O 1.35753 * 120.02814 * 180.02562 * 18 17 16 20 20 C 1.34827 * 117.00106 * 5.36822 * 19 18 17 21 21 H 1.07997 * 119.99947 * 354.96474 * 20 19 18 22 22 C 1.38657 * 119.99796 * 174.96647 * 20 19 18 23 23 N 1.31554 * 119.99875 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99944 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47217 * 89.99532 * 24 22 20 26 26 H 1.48502 * 109.47119 * 209.99561 * 24 22 20 27 27 H 1.48504 * 109.47072 * 329.99526 * 24 22 20 28 28 C 1.38711 * 120.03708 * 35.11532 * 14 13 11 29 29 H 1.08998 * 109.47183 * 300.00036 * 1 2 3 30 30 H 1.09000 * 109.47438 * 60.00252 * 1 2 3 31 31 H 1.09005 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47908 * 239.99790 * 2 1 3 33 33 H 1.09000 * 109.47376 * 119.99196 * 2 1 3 34 34 H 1.09002 * 109.46853 * 299.99967 * 5 3 2 35 35 H 1.09001 * 109.46954 * 59.99817 * 5 3 2 36 36 H 1.08992 * 109.47118 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47599 * 183.95463 * 7 6 3 38 38 H 1.09002 * 109.47580 * 303.96267 * 7 6 3 39 39 H 1.09004 * 109.46828 * 63.95919 * 7 6 3 40 40 H 1.08991 * 109.47634 * 49.99567 * 8 6 3 41 41 H 1.09006 * 109.46884 * 289.99692 * 8 6 3 42 42 H 1.08997 * 109.46979 * 299.99494 * 9 8 6 43 43 H 1.09000 * 109.46890 * 59.99860 * 9 8 6 44 44 H 0.97001 * 119.99984 * 359.97438 * 10 9 8 45 45 H 0.97006 * 120.00100 * 355.48579 * 13 11 10 46 46 H 1.07997 * 119.96514 * 359.97438 * 15 14 13 47 47 H 1.07999 * 119.93534 * 180.26813 * 16 15 14 48 48 H 1.07992 * 119.96749 * 179.72435 * 17 16 15 49 49 H 0.97003 * 119.99924 * 180.02562 * 23 22 20 50 50 H 1.08000 * 120.06139 * 359.96048 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 7 1.6513 2.0994 1.2552 7 6 2.3339 1.4874 2.4029 8 6 1.9122 3.5438 1.1963 9 6 1.2731 4.2273 2.4068 10 7 1.5339 5.6677 2.3483 11 6 1.0637 6.4775 3.3176 12 8 0.4226 6.0127 4.2403 13 7 1.3031 7.8027 3.2635 14 6 0.7364 8.6557 4.2174 15 6 0.3367 9.9363 3.8552 16 6 -0.2277 10.7771 4.7950 17 6 -0.3862 10.3518 6.1001 18 6 0.0161 9.0746 6.4695 19 8 -0.1404 8.6574 7.7518 20 6 -0.7929 9.4875 8.5903 21 1 -1.0922 10.4691 8.2539 22 6 -1.0795 9.0808 9.8846 23 7 -0.7153 7.8849 10.2941 24 14 -1.9841 10.2305 11.0461 25 1 -3.4475 10.0124 10.9185 26 1 -1.5626 9.9551 12.4431 27 1 -1.6614 11.6382 10.7000 28 6 0.5781 8.2257 5.5266 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9994 0.9054 0.7162 35 1 3.8532 0.9571 -1.0571 36 1 3.9280 2.4721 -0.1261 37 1 1.9759 1.9451 3.3251 38 1 2.1239 0.4180 2.4227 39 1 3.4087 1.6449 2.3127 40 1 1.4856 3.9531 0.2807 41 1 2.9880 3.7193 1.2059 42 1 0.1974 4.0518 2.3971 43 1 1.6999 3.8180 3.3224 44 1 2.0456 6.0385 1.6124 45 1 1.8684 8.1653 2.5635 46 1 0.4640 10.2734 2.8371 47 1 -0.5416 11.7704 4.5102 48 1 -0.8236 11.0129 6.8335 49 1 -0.9162 7.6002 11.1995 50 1 0.8914 7.2321 5.8113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066196682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:42 Heat of formation + Delta-G solvation = -20.408027 kcal Electronic energy + Delta-G solvation = -28177.300018 eV Core-core repulsion = 24205.794420 eV Total energy + Delta-G solvation = -3971.505598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.31014 -39.26409 -38.60487 -36.65500 -35.19017 -34.00903 -33.17835 -32.17752 -30.24454 -29.51746 -28.94948 -27.96468 -26.28898 -25.21472 -24.10937 -22.57192 -21.79745 -21.34086 -20.62054 -19.88060 -18.32084 -18.15111 -17.04107 -16.90002 -15.99903 -15.74957 -15.11373 -15.09480 -14.97964 -14.71349 -14.35726 -14.24269 -14.10496 -14.05358 -13.74720 -13.53790 -13.45329 -13.08180 -12.72749 -12.44522 -12.41192 -12.26875 -12.15985 -11.71169 -11.60577 -11.54775 -11.51981 -11.34975 -11.15352 -11.04691 -10.95799 -10.86088 -10.72469 -10.41239 -9.90888 -9.64153 -9.17789 -9.05403 -8.75195 -8.65162 -7.59408 -7.11032 -6.35593 -3.94619 2.15996 2.41968 2.64767 3.18106 3.19419 3.23977 3.41672 3.59328 4.03404 4.30322 4.36510 4.52381 4.65797 4.67741 4.76097 4.83672 4.98224 5.06365 5.15058 5.17001 5.18886 5.26660 5.31917 5.39585 5.43639 5.48729 5.68526 5.68784 5.70704 5.72513 5.77023 5.84122 5.89890 5.93405 6.12771 6.16133 6.29671 6.36072 6.48153 6.60630 6.70449 6.71132 6.90567 7.09866 7.13758 7.30259 7.41591 7.56603 7.89171 8.08718 8.10888 8.75023 9.09274 9.81760 10.82458 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016275 B = 0.001974 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.022277 B =14178.667294 C =15394.223058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.080 3.920 4 H 0.082 0.918 5 C -0.188 4.188 6 N -0.527 5.527 7 C 0.011 3.989 8 C 0.045 3.955 9 C 0.141 3.859 10 N -0.748 5.748 11 C 0.699 3.301 12 O -0.557 6.557 13 N -0.682 5.682 14 C 0.192 3.808 15 C -0.237 4.237 16 C -0.059 4.059 17 C -0.247 4.247 18 C 0.167 3.833 19 O -0.174 6.174 20 C -0.391 4.391 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.273 1.273 26 H -0.278 1.278 27 H -0.268 1.268 28 C -0.186 4.186 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.392 0.608 45 H 0.401 0.599 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.127 0.873 49 H 0.269 0.731 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.015 -9.992 -23.149 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.029 4.029 4 H 0.100 0.900 5 C -0.247 4.247 6 N -0.251 5.251 7 C -0.137 4.137 8 C -0.083 4.083 9 C 0.016 3.984 10 N -0.405 5.405 11 C 0.399 3.601 12 O -0.432 6.432 13 N -0.329 5.329 14 C 0.099 3.901 15 C -0.259 4.259 16 C -0.078 4.078 17 C -0.267 4.267 18 C 0.112 3.888 19 O -0.077 6.077 20 C -0.467 4.467 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.199 1.199 26 H -0.203 1.203 27 H -0.192 1.192 28 C -0.208 4.208 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.226 0.774 45 H 0.235 0.765 46 H 0.125 0.875 47 H 0.129 0.871 48 H 0.145 0.855 49 H 0.079 0.921 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.951 -10.920 -21.894 25.434 hybrid contribution 0.994 1.104 -0.348 1.526 sum 7.945 -9.816 -22.242 25.577 Atomic orbital electron populations 1.21675 0.94998 1.00966 1.02697 1.21592 0.97016 0.94911 1.01788 1.21798 0.93208 0.95806 0.92050 0.89973 1.22492 0.97637 1.02068 1.02525 1.62045 1.57944 1.01954 1.03164 1.22586 0.96525 1.00609 0.93950 1.22241 0.98740 0.88545 0.98815 1.21113 1.01603 0.77878 0.97774 1.44974 1.60532 1.07758 1.27226 1.15924 0.80314 0.81064 0.82820 1.91037 1.43573 1.74378 1.34180 1.42450 1.52962 1.05279 1.32243 1.16948 0.96817 0.89296 0.87086 1.20234 1.11525 0.94856 0.99248 1.20477 0.96751 0.97945 0.92604 1.21171 1.10734 0.97611 0.97173 1.19145 0.92345 0.91513 0.85779 1.83994 1.65584 1.43984 1.14162 1.21340 1.35597 0.97453 0.92319 0.89021 1.25302 0.97446 0.96961 0.96936 1.70059 1.43536 1.17747 1.18259 0.85711 0.79297 0.79395 0.78980 1.19912 1.20341 1.19224 1.20198 1.09160 1.01326 0.90070 0.91260 0.93198 0.93455 0.91901 0.91758 0.92023 0.92029 0.92598 0.90678 0.90923 0.95060 0.90258 0.94082 0.90560 0.91394 0.77449 0.76514 0.87497 0.87097 0.85509 0.92089 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.80 37.15 0.36 -0.64 16 2 C -0.12 -0.70 5.33 -26.73 -0.14 -0.85 16 3 C 0.08 0.51 2.31 -67.71 -0.16 0.35 16 4 H 0.08 0.52 7.93 -51.93 -0.41 0.10 16 5 C -0.19 -1.06 8.44 37.16 0.31 -0.74 16 6 N -0.53 -4.06 4.16 -234.89 -0.98 -5.04 16 7 C 0.01 0.09 8.44 60.06 0.51 0.59 16 8 C 0.05 0.34 4.64 -3.82 -0.02 0.32 16 9 C 0.14 1.51 5.60 -4.04 -0.02 1.48 16 10 N -0.75 -8.21 5.56 -65.23 -0.36 -8.58 16 11 C 0.70 11.34 8.41 -86.92 -0.73 10.61 16 12 O -0.56 -12.15 13.78 5.29 0.07 -12.08 16 13 N -0.68 -10.17 5.34 -14.24 -0.08 -10.25 16 14 C 0.19 3.71 6.30 -83.71 -0.53 3.18 16 15 C -0.24 -4.16 9.96 -39.34 -0.39 -4.55 16 16 C -0.06 -1.10 10.03 -39.63 -0.40 -1.50 16 17 C -0.25 -5.57 9.17 -39.36 -0.36 -5.94 16 18 C 0.17 4.32 6.64 -39.14 -0.26 4.06 16 19 O -0.17 -5.27 9.75 0.05 0.00 -5.27 16 20 C -0.39 -11.35 9.49 30.89 0.29 -11.05 16 21 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 22 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 23 N -0.86 -26.27 13.67 55.48 0.76 -25.51 16 24 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 28 C -0.19 -4.44 8.64 -39.21 -0.34 -4.77 16 29 H 0.07 0.58 7.75 -51.93 -0.40 0.18 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.41 6.26 -51.93 -0.33 0.08 16 34 H 0.06 0.37 6.42 -51.93 -0.33 0.03 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.32 6.91 -51.93 -0.36 -0.04 16 37 H 0.07 0.66 6.47 -51.93 -0.34 0.33 16 38 H 0.07 0.51 6.21 -51.93 -0.32 0.19 16 39 H 0.03 0.22 6.46 -51.93 -0.34 -0.11 16 40 H 0.08 0.53 7.93 -51.93 -0.41 0.11 16 41 H 0.04 0.28 7.06 -51.93 -0.37 -0.08 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 0.83 6.55 -51.93 -0.34 0.49 16 44 H 0.39 2.84 8.49 -40.82 -0.35 2.49 16 45 H 0.40 4.13 8.84 -40.82 -0.36 3.77 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 47 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 48 H 0.13 2.83 5.63 -52.49 -0.30 2.53 16 49 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.14 3.49 6.22 -52.49 -0.33 3.16 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -35.45 397.31 -9.23 -44.67 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -7.64 Total: 8.39 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.96 Total: -8.46 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.66 Total: -49.37 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: 0.07 Total: -17.35 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.45 -9.23 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066196682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.264 kcal (2) G-P(sol) polarization free energy of solvation -35.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds