Wall clock time and date at job start Tue Mar 31 2020 18:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47142 * 2 1 4 4 H 1.09002 * 109.47000 * 304.99745 * 3 2 1 5 5 C 1.53002 * 109.47581 * 184.99868 * 3 2 1 6 6 N 1.46905 * 109.47429 * 64.99737 * 3 2 1 7 7 C 1.46892 * 110.99950 * 66.04481 * 6 3 2 8 8 C 1.46899 * 111.00147 * 190.00732 * 6 3 2 9 9 C 1.53003 * 109.47096 * 169.99910 * 8 6 3 10 10 N 1.46498 * 109.47040 * 179.97438 * 9 8 6 11 11 C 1.34774 * 119.99894 * 180.02562 * 10 9 8 12 12 O 1.21591 * 120.00083 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99917 * 180.02562 * 11 10 9 14 14 C 1.39946 * 120.00259 * 175.49638 * 13 11 10 15 15 C 1.38958 * 120.03606 * 214.85137 * 14 13 11 16 16 C 1.38161 * 120.06874 * 179.73997 * 15 14 13 17 17 C 1.38171 * 120.13762 * 0.55211 * 16 15 14 18 18 C 1.38912 * 120.06500 * 359.69483 * 17 16 15 19 19 O 1.35753 * 120.02814 * 180.02562 * 18 17 16 20 20 C 1.34827 * 117.00106 * 5.36822 * 19 18 17 21 21 H 1.07997 * 119.99947 * 354.96474 * 20 19 18 22 22 C 1.38657 * 119.99796 * 174.96647 * 20 19 18 23 23 N 1.31554 * 119.99875 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99944 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47217 * 89.99532 * 24 22 20 26 26 H 1.48502 * 109.47119 * 209.99561 * 24 22 20 27 27 H 1.48504 * 109.47072 * 329.99526 * 24 22 20 28 28 C 1.38711 * 120.03708 * 35.11532 * 14 13 11 29 29 H 1.08998 * 109.47183 * 300.00036 * 1 2 3 30 30 H 1.09000 * 109.47438 * 60.00252 * 1 2 3 31 31 H 1.09005 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47908 * 239.99790 * 2 1 3 33 33 H 1.09000 * 109.47376 * 119.99196 * 2 1 3 34 34 H 1.09002 * 109.46853 * 299.99967 * 5 3 2 35 35 H 1.09001 * 109.46954 * 59.99817 * 5 3 2 36 36 H 1.08992 * 109.47118 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47599 * 183.95463 * 7 6 3 38 38 H 1.09002 * 109.47580 * 303.96267 * 7 6 3 39 39 H 1.09004 * 109.46828 * 63.95919 * 7 6 3 40 40 H 1.08991 * 109.47634 * 49.99567 * 8 6 3 41 41 H 1.09006 * 109.46884 * 289.99692 * 8 6 3 42 42 H 1.08997 * 109.46979 * 299.99494 * 9 8 6 43 43 H 1.09000 * 109.46890 * 59.99860 * 9 8 6 44 44 H 0.97001 * 119.99984 * 359.97438 * 10 9 8 45 45 H 0.97006 * 120.00100 * 355.48579 * 13 11 10 46 46 H 1.07997 * 119.96514 * 359.97438 * 15 14 13 47 47 H 1.07999 * 119.93534 * 180.26813 * 16 15 14 48 48 H 1.07992 * 119.96749 * 179.72435 * 17 16 15 49 49 H 0.97003 * 119.99924 * 180.02562 * 23 22 20 50 50 H 1.08000 * 120.06139 * 359.96048 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 7 1.6513 2.0994 1.2552 7 6 2.3339 1.4874 2.4029 8 6 1.9122 3.5438 1.1963 9 6 1.2731 4.2273 2.4068 10 7 1.5339 5.6677 2.3483 11 6 1.0637 6.4775 3.3176 12 8 0.4226 6.0127 4.2403 13 7 1.3031 7.8027 3.2635 14 6 0.7364 8.6557 4.2174 15 6 0.3367 9.9363 3.8552 16 6 -0.2277 10.7771 4.7950 17 6 -0.3862 10.3518 6.1001 18 6 0.0161 9.0746 6.4695 19 8 -0.1404 8.6574 7.7518 20 6 -0.7929 9.4875 8.5903 21 1 -1.0922 10.4691 8.2539 22 6 -1.0795 9.0808 9.8846 23 7 -0.7153 7.8849 10.2941 24 14 -1.9841 10.2305 11.0461 25 1 -3.4475 10.0124 10.9185 26 1 -1.5626 9.9551 12.4431 27 1 -1.6614 11.6382 10.7000 28 6 0.5781 8.2257 5.5266 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.9994 0.9054 0.7162 35 1 3.8532 0.9571 -1.0571 36 1 3.9280 2.4721 -0.1261 37 1 1.9759 1.9451 3.3251 38 1 2.1239 0.4180 2.4227 39 1 3.4087 1.6449 2.3127 40 1 1.4856 3.9531 0.2807 41 1 2.9880 3.7193 1.2059 42 1 0.1974 4.0518 2.3971 43 1 1.6999 3.8180 3.3224 44 1 2.0456 6.0385 1.6124 45 1 1.8684 8.1653 2.5635 46 1 0.4640 10.2734 2.8371 47 1 -0.5416 11.7704 4.5102 48 1 -0.8236 11.0129 6.8335 49 1 -0.9162 7.6002 11.1995 50 1 0.8914 7.2321 5.8113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066196682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:41 Heat of formation + Delta-G solvation = -47.166659 kcal Electronic energy + Delta-G solvation = -28178.460360 eV Core-core repulsion = 24205.794420 eV Total energy + Delta-G solvation = -3972.665939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.70479 -40.47981 -39.79686 -38.33381 -36.26858 -35.54516 -34.25363 -33.91118 -31.26938 -30.76087 -30.15783 -29.13260 -27.34121 -26.97461 -24.78053 -23.92152 -23.11164 -22.58186 -22.03736 -20.47886 -19.96659 -19.61645 -18.84394 -17.75472 -17.09263 -17.01182 -16.71472 -16.29900 -16.07410 -15.97548 -15.71445 -15.55064 -15.46735 -15.16041 -14.87842 -14.58221 -14.40108 -14.25588 -14.16344 -13.75532 -13.57239 -13.16889 -13.01209 -12.94408 -12.88665 -12.80013 -12.67433 -12.35193 -12.22146 -12.10558 -12.09696 -12.05821 -11.62023 -11.55898 -11.37868 -11.30824 -10.93994 -10.75666 -10.20260 -9.28409 -9.23413 -8.83029 -8.44975 -6.14562 0.49473 0.73716 1.34664 1.45377 1.48010 1.54102 2.04424 2.19613 2.84221 2.86059 3.20230 3.29660 3.62440 3.79304 3.89288 4.03276 4.17011 4.17931 4.31863 4.38725 4.39410 4.45540 4.50147 4.53796 4.57817 4.71654 4.72508 4.77873 4.80102 4.83222 4.88674 4.96507 5.03433 5.08177 5.13414 5.15090 5.21107 5.27516 5.34504 5.40588 5.42476 5.50134 5.55229 5.66729 5.77205 5.97841 6.05650 6.08177 6.15804 6.24677 6.98451 7.00739 7.49273 7.82535 8.79105 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016275 B = 0.001974 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.022277 B =14178.667294 C =15394.223058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.081 3.919 4 H 0.088 0.912 5 C -0.184 4.184 6 N -0.540 5.540 7 C 0.014 3.986 8 C 0.058 3.942 9 C 0.144 3.856 10 N -0.719 5.719 11 C 0.693 3.307 12 O -0.619 6.619 13 N -0.663 5.663 14 C 0.201 3.799 15 C -0.203 4.203 16 C -0.048 4.048 17 C -0.256 4.256 18 C 0.125 3.875 19 O -0.237 6.237 20 C -0.413 4.413 21 H 0.107 0.893 22 C -0.030 4.030 23 N -0.926 5.926 24 Si 1.025 2.975 25 H -0.264 1.264 26 H -0.272 1.272 27 H -0.247 1.247 28 C -0.214 4.214 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.417 0.583 45 H 0.428 0.572 46 H 0.166 0.834 47 H 0.161 0.839 48 H 0.123 0.877 49 H 0.272 0.728 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.567 -7.557 -27.347 29.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.027 4.027 4 H 0.106 0.894 5 C -0.243 4.243 6 N -0.265 5.265 7 C -0.134 4.134 8 C -0.071 4.071 9 C 0.019 3.981 10 N -0.377 5.377 11 C 0.393 3.607 12 O -0.498 6.498 13 N -0.313 5.313 14 C 0.106 3.894 15 C -0.224 4.224 16 C -0.066 4.066 17 C -0.276 4.276 18 C 0.074 3.926 19 O -0.143 6.143 20 C -0.489 4.489 21 H 0.125 0.875 22 C -0.227 4.227 23 N -0.564 5.564 24 Si 0.843 3.157 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.170 1.170 28 C -0.236 4.236 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.254 0.746 45 H 0.268 0.732 46 H 0.183 0.817 47 H 0.179 0.821 48 H 0.141 0.859 49 H 0.081 0.919 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.575 -8.464 -26.245 28.598 hybrid contribution 0.919 0.304 0.561 1.119 sum 8.494 -8.160 -25.684 28.256 Atomic orbital electron populations 1.21640 0.95727 1.00933 1.01821 1.21594 0.96293 0.95008 1.02254 1.21832 0.93902 0.95709 0.91227 0.89374 1.22444 0.96733 1.02230 1.02851 1.62010 1.58487 1.02136 1.03831 1.22523 0.96821 1.00719 0.93337 1.22128 0.99221 0.88253 0.97460 1.21097 1.00489 0.77661 0.98871 1.44684 1.59216 1.07380 1.26399 1.16210 0.79971 0.81630 0.82856 1.91028 1.46381 1.75510 1.36901 1.42188 1.52842 1.04487 1.31811 1.17089 0.95742 0.90679 0.85935 1.20868 1.07198 0.92807 1.01516 1.21037 0.94946 1.00082 0.90571 1.21326 1.10866 0.96094 0.99346 1.19693 0.94233 0.93615 0.85062 1.83960 1.68223 1.45824 1.16343 1.21925 1.35857 0.98152 0.92938 0.87549 1.26749 0.98274 0.98967 0.98694 1.70235 1.46526 1.20634 1.19033 0.84509 0.77711 0.77491 0.75945 1.18911 1.19667 1.17036 1.20206 1.11010 1.00020 0.92397 0.93213 0.92896 0.93132 0.90528 0.92160 0.92537 0.91003 0.92413 0.92618 0.90498 0.94358 0.88479 0.92657 0.92792 0.93402 0.74555 0.73191 0.81680 0.82113 0.85891 0.91947 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.80 71.98 0.71 -1.17 16 2 C -0.11 -1.23 5.33 30.59 0.16 -1.06 16 3 C 0.08 0.88 2.31 44.92 0.10 0.98 16 4 H 0.09 0.87 7.93 -2.39 -0.02 0.86 16 5 C -0.18 -1.63 8.44 71.98 0.61 -1.02 16 6 N -0.54 -7.86 4.16 -897.04 -3.74 -11.59 16 7 C 0.01 0.22 8.44 127.69 1.08 1.29 16 8 C 0.06 0.76 4.64 86.30 0.40 1.16 16 9 C 0.14 3.08 5.60 86.38 0.48 3.56 16 10 N -0.72 -14.76 5.56 -478.54 -2.66 -17.42 16 11 C 0.69 22.29 8.41 179.06 1.51 23.79 16 12 O -0.62 -28.56 13.78 -4.00 -0.06 -28.61 16 13 N -0.66 -18.20 5.34 -317.23 -1.69 -19.90 16 14 C 0.20 7.41 6.30 38.13 0.24 7.65 16 15 C -0.20 -6.08 9.96 22.42 0.22 -5.86 16 16 C -0.05 -1.59 10.03 22.24 0.22 -1.37 16 17 C -0.26 -11.52 9.17 22.42 0.21 -11.31 16 18 C 0.12 6.83 6.64 22.56 0.15 6.98 16 19 O -0.24 -15.54 9.75 -22.75 -0.22 -15.76 16 20 C -0.41 -25.41 9.49 67.92 0.64 -24.76 16 21 H 0.11 5.89 5.20 -2.91 -0.02 5.88 16 22 C -0.03 -1.82 5.49 84.83 0.47 -1.35 16 23 N -0.93 -60.50 13.67 21.61 0.30 -60.21 16 24 Si 1.02 44.80 29.55 68.60 2.03 46.82 16 25 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 28 C -0.21 -10.75 8.64 22.51 0.19 -10.55 16 29 H 0.05 0.84 7.75 -2.39 -0.02 0.82 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.70 6.26 -2.39 -0.01 0.69 16 34 H 0.06 0.57 6.42 -2.39 -0.02 0.55 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.50 6.91 -2.39 -0.02 0.48 16 37 H 0.06 1.07 6.47 -2.39 -0.02 1.05 16 38 H 0.08 1.10 6.21 -2.39 -0.01 1.08 16 39 H 0.04 0.53 6.46 -2.38 -0.02 0.51 16 40 H 0.10 0.98 7.93 -2.39 -0.02 0.96 16 41 H 0.06 0.61 7.06 -2.38 -0.02 0.59 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.24 6.55 -2.39 -0.02 1.23 16 44 H 0.42 4.58 8.49 -92.71 -0.79 3.80 16 45 H 0.43 6.86 8.84 -92.70 -0.82 6.04 16 46 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 47 H 0.16 3.83 8.06 -2.91 -0.02 3.80 16 48 H 0.12 5.52 5.63 -2.91 -0.02 5.50 16 49 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 50 H 0.10 5.61 6.22 -2.91 -0.02 5.59 16 Total: -1.00 -88.77 397.31 0.72 -88.05 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.63 Total: 31.65 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 7.39 Total: -13.04 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -7.80 Total: -109.11 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.28 Total: -44.38 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -88.77 0.72 -88.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066196682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.887 kcal (2) G-P(sol) polarization free energy of solvation -88.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds