Wall clock time and date at job start Tue Mar 31 2020 19:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 N 1.46497 * 109.47496 * 180.02562 * 3 2 1 5 5 N 1.39932 * 125.74245 * 270.04314 * 4 3 2 6 6 C 1.30427 * 108.91829 * 179.67489 * 5 4 3 7 7 C 1.50699 * 125.99200 * 180.25963 * 6 5 4 8 8 C 1.41343 * 108.01476 * 0.44462 * 6 5 4 9 9 C 1.47286 * 126.42564 * 179.81706 * 8 6 5 10 10 O 1.21521 * 119.99893 * 269.68417 * 9 8 6 11 11 O 1.34753 * 119.99884 * 89.69274 * 9 8 6 12 12 C 1.45194 * 117.00057 * 179.97438 * 11 9 8 13 13 C 1.53349 * 109.42079 * 270.12653 * 12 11 9 14 14 C 1.53196 * 109.15353 * 178.67344 * 13 12 11 15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12 16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13 17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14 18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15 21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16 24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13 25 25 C 1.53044 * 109.46272 * 149.99815 * 12 11 9 26 26 C 1.34220 * 125.74545 * 89.99569 * 4 3 2 27 27 C 1.50698 * 126.29536 * 0.02562 * 26 4 3 28 28 H 1.08997 * 109.46846 * 299.99775 * 1 2 3 29 29 H 1.08995 * 109.46809 * 60.00052 * 1 2 3 30 30 H 1.08999 * 109.46921 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47182 * 239.99992 * 2 1 3 32 32 H 1.09000 * 109.47186 * 120.00256 * 2 1 3 33 33 H 1.08996 * 109.47099 * 59.99533 * 3 2 1 34 34 H 1.09008 * 109.47001 * 300.00046 * 3 2 1 35 35 H 1.09001 * 109.47244 * 270.21521 * 7 6 5 36 36 H 1.09007 * 109.47273 * 30.21608 * 7 6 5 37 37 H 1.08998 * 109.47276 * 150.21298 * 7 6 5 38 38 H 1.09003 * 109.46084 * 30.02736 * 12 11 9 39 39 H 1.08998 * 109.68701 * 58.70833 * 13 12 11 40 40 H 1.09000 * 109.47234 * 298.50901 * 13 12 11 41 41 H 1.08996 * 109.58345 * 294.72319 * 14 13 12 42 42 H 1.08994 * 109.58644 * 174.43734 * 14 13 12 43 43 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58664 * 173.39523 * 24 15 14 45 45 H 1.08996 * 109.58580 * 293.67452 * 24 15 14 46 46 H 1.08992 * 109.49619 * 61.43135 * 25 12 11 47 47 H 1.09005 * 109.49321 * 301.33451 * 25 12 11 48 48 H 1.08998 * 109.47285 * 269.99438 * 27 26 4 49 49 H 1.08999 * 109.47351 * 30.00009 * 27 26 4 50 50 H 1.09002 * 109.46947 * 149.99825 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3229 1.4415 1.1348 6 6 5.5712 1.4349 0.7568 7 6 6.7721 1.4260 1.6671 8 6 5.6000 1.4417 -0.6563 9 6 6.8027 1.4416 -1.5066 10 8 7.2993 2.4939 -1.8568 11 8 7.3522 0.2745 -1.8961 12 6 8.5359 0.3503 -2.7336 13 6 8.1161 0.3809 -4.2082 14 6 9.3674 0.4943 -5.0847 15 7 10.2897 -0.5965 -4.7406 16 6 10.7710 -1.4351 -5.7102 17 1 10.1877 -1.6237 -6.5993 18 6 12.0088 -2.0428 -5.5504 19 7 12.8601 -1.5780 -4.6606 20 14 12.4664 -3.5200 -6.5982 21 1 12.4370 -3.1375 -8.0328 22 1 13.8310 -3.9802 -6.2359 23 1 11.4946 -4.6170 -6.3585 24 6 10.6853 -0.7706 -3.3364 25 6 9.4212 -0.8714 -2.4769 26 6 4.2886 1.4426 -1.0903 27 6 3.8234 1.4432 -2.5237 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 7.0654 2.4516 1.8916 36 1 6.5222 0.9085 2.5933 37 1 7.5974 0.9116 1.1748 38 1 9.0913 1.2576 -2.4959 39 1 7.4674 1.2383 -4.3876 40 1 7.5824 -0.5374 -4.4532 41 1 9.8531 1.4535 -4.9058 42 1 9.0860 0.4174 -6.1349 43 1 13.7249 -2.0028 -4.5487 44 1 11.2715 -1.6837 -3.2324 45 1 11.2806 0.0842 -3.0158 46 1 8.8750 -1.7777 -2.7379 47 1 9.6992 -0.9043 -1.4234 48 1 3.7109 0.4157 -2.8696 49 1 2.8649 1.9574 -2.5943 50 1 4.5579 1.9570 -3.1438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121119228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:07 Heat of formation + Delta-G solvation = -8.145491 kcal Electronic energy + Delta-G solvation = -29500.835277 eV Core-core repulsion = 25529.861423 eV Total energy + Delta-G solvation = -3970.973855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.72350 -39.89180 -37.34654 -36.02222 -35.62473 -33.34316 -32.69764 -31.93916 -30.33218 -29.62597 -29.19757 -27.86621 -26.00486 -25.14086 -23.29695 -22.29537 -22.11229 -21.52401 -19.93183 -19.65973 -19.26309 -17.65243 -17.04653 -16.70470 -16.04843 -15.68448 -15.46249 -15.21252 -14.77329 -14.20037 -13.98951 -13.96935 -13.59626 -13.55360 -13.52993 -13.23253 -12.96535 -12.81801 -12.78949 -12.72174 -12.52951 -12.45285 -12.36371 -12.11070 -11.74349 -11.50899 -11.34686 -11.18470 -11.03689 -10.96207 -10.72368 -10.70350 -10.43477 -10.22805 -10.17324 -9.87475 -9.64341 -9.40462 -9.38774 -8.72789 -8.48067 -6.71659 -5.80816 -3.23475 1.44321 2.02768 2.24672 2.34666 3.19505 3.38869 3.44402 3.45650 4.07805 4.19270 4.31442 4.46920 4.48712 4.58709 4.70794 4.82773 4.94785 5.08154 5.12416 5.13687 5.18853 5.28871 5.38950 5.42713 5.46302 5.47947 5.48511 5.51818 5.55016 5.56862 5.69778 5.73232 5.77156 5.79852 6.02990 6.25247 6.28497 6.43135 6.44472 6.54055 6.60970 6.63579 6.74025 6.89064 6.98741 7.30849 7.42139 7.60143 7.78123 8.07672 8.42993 9.18749 9.81579 10.38463 11.28409 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002427 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.104841 B =11532.089151 C =12070.215718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.130 3.870 4 N -0.358 5.358 5 N -0.296 5.296 6 C 0.121 3.879 7 C -0.079 4.079 8 C -0.264 4.264 9 C 0.546 3.454 10 O -0.502 6.502 11 O -0.349 6.349 12 C 0.096 3.904 13 C -0.145 4.145 14 C 0.149 3.851 15 N -0.592 5.592 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.904 3.096 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.174 3.826 25 C -0.134 4.134 26 C 0.137 3.863 27 C -0.101 4.101 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.022 0.978 42 H 0.060 0.940 43 H 0.255 0.745 44 H 0.096 0.904 45 H 0.023 0.977 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.105 5.203 10.658 25.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.137 5.137 5 N -0.117 5.117 6 C -0.045 4.045 7 C -0.138 4.138 8 C -0.277 4.277 9 C 0.387 3.613 10 O -0.390 6.390 11 O -0.265 6.265 12 C 0.042 3.958 13 C -0.185 4.185 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.384 4.384 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.734 3.266 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.048 3.952 25 C -0.174 4.174 26 C 0.006 3.994 27 C -0.159 4.159 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.114 0.886 45 H 0.041 0.959 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.110 0.890 49 H 0.096 0.904 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.682 5.451 11.549 26.906 hybrid contribution 0.796 -0.647 -1.205 1.583 sum -22.887 4.804 10.344 25.571 Atomic orbital electron populations 1.21694 0.94078 1.02694 1.02229 1.21945 0.96803 0.95503 1.03810 1.21881 0.73606 0.98877 1.04757 1.48258 1.06452 1.55965 1.03014 1.77101 1.00881 1.26648 1.07078 1.22295 0.93780 0.96789 0.91679 1.20303 0.92105 1.03624 0.97765 1.19069 0.90909 1.24559 0.93174 1.20051 0.82215 0.82319 0.76687 1.90827 1.61548 1.33010 1.53616 1.86725 1.43552 1.33349 1.62912 1.23033 0.82788 1.00953 0.89012 1.22514 1.00338 1.01362 0.94260 1.20857 0.88975 0.91469 0.96504 1.44103 1.52497 1.31618 1.03296 1.19142 0.98689 1.19826 1.00721 0.91604 1.25067 0.95070 1.00439 0.99011 1.70007 1.07076 1.40229 1.37419 0.86345 0.77235 0.83026 0.80010 1.20856 1.21610 1.20986 1.20815 0.90459 1.02038 0.81933 1.22445 0.98398 0.96037 1.00507 1.21271 0.89445 0.97468 0.91194 1.20618 1.02669 1.04330 0.88272 0.92223 0.92260 0.91786 0.91068 0.90707 0.88328 0.88677 0.89849 0.90116 0.90034 0.90310 0.92701 0.91411 0.96024 0.92157 0.93466 0.88599 0.95924 0.91507 0.92354 0.88998 0.90357 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.14 -0.86 6.26 -26.73 -0.17 -1.02 16 3 C 0.13 0.87 6.21 -4.05 -0.03 0.84 16 4 N -0.36 -3.93 3.58 -56.60 -0.20 -4.13 16 5 N -0.30 -3.91 12.50 33.90 0.42 -3.48 16 6 C 0.12 1.66 7.27 -82.01 -0.60 1.07 16 7 C -0.08 -0.88 10.28 36.01 0.37 -0.51 16 8 C -0.26 -3.90 6.00 -105.08 -0.63 -4.53 16 9 C 0.55 9.27 7.09 34.41 0.24 9.52 16 10 O -0.50 -9.71 16.37 -19.28 -0.32 -10.02 16 11 O -0.35 -6.19 9.89 -40.63 -0.40 -6.59 16 12 C 0.10 1.82 2.42 -26.53 -0.06 1.76 16 13 C -0.15 -2.72 5.75 -26.45 -0.15 -2.87 16 14 C 0.15 3.20 6.51 -3.71 -0.02 3.17 16 15 N -0.59 -14.93 2.99 -172.32 -0.52 -15.44 16 16 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 17 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 19 N -0.90 -26.03 11.20 55.49 0.62 -25.41 16 20 Si 0.90 21.53 29.59 -169.99 -5.03 16.51 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 25 C -0.13 -2.67 5.74 -26.61 -0.15 -2.82 16 26 C 0.14 1.64 7.01 -81.59 -0.57 1.07 16 27 C -0.10 -0.87 9.93 36.00 0.36 -0.52 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.42 7.01 -51.92 -0.36 0.06 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.08 0.93 8.01 -51.93 -0.42 0.51 16 38 H 0.08 1.58 7.16 -51.93 -0.37 1.21 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.10 2.52 6.06 -51.93 -0.31 2.21 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.08 0.45 7.05 -51.93 -0.37 0.09 16 50 H 0.09 0.88 7.96 -51.93 -0.41 0.47 16 LS Contribution 407.12 15.07 6.14 6.14 Total: -1.00 -33.06 407.12 -9.13 -42.19 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.55 Total: -1.70 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -1.29 Total: 1.96 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.33 Total: -48.46 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.72 Total: -16.62 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.06 -9.13 -42.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121119228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.044 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds