Wall clock time and date at job start Tue Mar 31 2020 19:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47304 * 2 1 4 4 N 1.46497 * 109.47496 * 180.02562 * 3 2 1 5 5 N 1.39932 * 125.74245 * 270.04314 * 4 3 2 6 6 C 1.30427 * 108.91829 * 179.67489 * 5 4 3 7 7 C 1.50699 * 125.99200 * 180.25963 * 6 5 4 8 8 C 1.41343 * 108.01476 * 0.44462 * 6 5 4 9 9 C 1.47286 * 126.42564 * 179.81706 * 8 6 5 10 10 O 1.21521 * 119.99893 * 269.68417 * 9 8 6 11 11 O 1.34753 * 119.99884 * 89.69274 * 9 8 6 12 12 C 1.45194 * 117.00057 * 179.97438 * 11 9 8 13 13 C 1.53349 * 109.42079 * 270.12653 * 12 11 9 14 14 C 1.53196 * 109.15353 * 178.67344 * 13 12 11 15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12 16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13 17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14 18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14 19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15 20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15 21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16 24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13 25 25 C 1.53044 * 109.46272 * 149.99815 * 12 11 9 26 26 C 1.34220 * 125.74545 * 89.99569 * 4 3 2 27 27 C 1.50698 * 126.29536 * 0.02562 * 26 4 3 28 28 H 1.08997 * 109.46846 * 299.99775 * 1 2 3 29 29 H 1.08995 * 109.46809 * 60.00052 * 1 2 3 30 30 H 1.08999 * 109.46921 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47182 * 239.99992 * 2 1 3 32 32 H 1.09000 * 109.47186 * 120.00256 * 2 1 3 33 33 H 1.08996 * 109.47099 * 59.99533 * 3 2 1 34 34 H 1.09008 * 109.47001 * 300.00046 * 3 2 1 35 35 H 1.09001 * 109.47244 * 270.21521 * 7 6 5 36 36 H 1.09007 * 109.47273 * 30.21608 * 7 6 5 37 37 H 1.08998 * 109.47276 * 150.21298 * 7 6 5 38 38 H 1.09003 * 109.46084 * 30.02736 * 12 11 9 39 39 H 1.08998 * 109.68701 * 58.70833 * 13 12 11 40 40 H 1.09000 * 109.47234 * 298.50901 * 13 12 11 41 41 H 1.08996 * 109.58345 * 294.72319 * 14 13 12 42 42 H 1.08994 * 109.58644 * 174.43734 * 14 13 12 43 43 H 0.96996 * 119.99787 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.58664 * 173.39523 * 24 15 14 45 45 H 1.08996 * 109.58580 * 293.67452 * 24 15 14 46 46 H 1.08992 * 109.49619 * 61.43135 * 25 12 11 47 47 H 1.09005 * 109.49321 * 301.33451 * 25 12 11 48 48 H 1.08998 * 109.47285 * 269.99438 * 27 26 4 49 49 H 1.08999 * 109.47351 * 30.00009 * 27 26 4 50 50 H 1.09002 * 109.46947 * 149.99825 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3229 1.4415 1.1348 6 6 5.5712 1.4349 0.7568 7 6 6.7721 1.4260 1.6671 8 6 5.6000 1.4417 -0.6563 9 6 6.8027 1.4416 -1.5066 10 8 7.2993 2.4939 -1.8568 11 8 7.3522 0.2745 -1.8961 12 6 8.5359 0.3503 -2.7336 13 6 8.1161 0.3809 -4.2082 14 6 9.3674 0.4943 -5.0847 15 7 10.2897 -0.5965 -4.7406 16 6 10.7710 -1.4351 -5.7102 17 1 10.1877 -1.6237 -6.5993 18 6 12.0088 -2.0428 -5.5504 19 7 12.8601 -1.5780 -4.6606 20 14 12.4664 -3.5200 -6.5982 21 1 12.4370 -3.1375 -8.0328 22 1 13.8310 -3.9802 -6.2359 23 1 11.4946 -4.6170 -6.3585 24 6 10.6853 -0.7706 -3.3364 25 6 9.4212 -0.8714 -2.4769 26 6 4.2886 1.4426 -1.0903 27 6 3.8234 1.4432 -2.5237 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 7.0654 2.4516 1.8916 36 1 6.5222 0.9085 2.5933 37 1 7.5974 0.9116 1.1748 38 1 9.0913 1.2576 -2.4959 39 1 7.4674 1.2383 -4.3876 40 1 7.5824 -0.5374 -4.4532 41 1 9.8531 1.4535 -4.9058 42 1 9.0860 0.4174 -6.1349 43 1 13.7249 -2.0028 -4.5487 44 1 11.2715 -1.6837 -3.2324 45 1 11.2806 0.0842 -3.0158 46 1 8.8750 -1.7777 -2.7379 47 1 9.6992 -0.9043 -1.4234 48 1 3.7109 0.4157 -2.8696 49 1 2.8649 1.9574 -2.5943 50 1 4.5579 1.9570 -3.1438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121119228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:05 Heat of formation + Delta-G solvation = -25.668851 kcal Electronic energy + Delta-G solvation = -29501.595147 eV Core-core repulsion = 25529.861423 eV Total energy + Delta-G solvation = -3971.733724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.67500 -41.28533 -39.01523 -37.21893 -36.63456 -34.57368 -34.08075 -32.85110 -32.08626 -31.43780 -29.93879 -28.79203 -27.16561 -26.54773 -24.63276 -23.91411 -23.25728 -22.56648 -21.13720 -20.94121 -20.53083 -18.92760 -18.81100 -17.95463 -17.14647 -16.91899 -16.53808 -16.49664 -15.99851 -15.62336 -15.40500 -15.07143 -14.93373 -14.70529 -14.52368 -14.42439 -14.21059 -14.18077 -14.09167 -13.49342 -13.39151 -13.30021 -13.20808 -13.04556 -12.97212 -12.80208 -12.66704 -12.57746 -12.48447 -12.24197 -12.18187 -12.04208 -11.97963 -11.84739 -11.72534 -11.55201 -11.37917 -11.05054 -10.54323 -10.25377 -9.71511 -8.74675 -7.89051 -5.35089 0.53319 1.02444 1.13654 1.29670 1.49354 1.51873 1.58669 1.91384 2.51873 3.26800 3.32314 3.41438 3.58798 3.75582 3.78987 3.84419 3.86329 3.88748 3.96637 4.16993 4.20019 4.24477 4.37902 4.42983 4.48220 4.56034 4.57890 4.64153 4.64665 4.74198 4.77651 4.81280 4.83500 4.87888 4.92420 4.95001 4.98789 5.05240 5.11841 5.15046 5.23091 5.35954 5.36392 5.40950 5.48297 5.63388 5.68834 5.85550 6.37483 6.48119 6.70651 7.12193 7.80843 8.34201 9.18672 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002427 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.104841 B =11532.089151 C =12070.215718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.350 5.350 5 N -0.313 5.313 6 C 0.110 3.890 7 C -0.080 4.080 8 C -0.307 4.307 9 C 0.556 3.444 10 O -0.530 6.530 11 O -0.347 6.347 12 C 0.103 3.897 13 C -0.131 4.131 14 C 0.146 3.854 15 N -0.610 5.610 16 C -0.266 4.266 17 H 0.071 0.929 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.275 1.275 22 H -0.294 1.294 23 H -0.277 1.277 24 C 0.181 3.819 25 C -0.121 4.121 26 C 0.148 3.852 27 C -0.102 4.102 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.014 0.986 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.068 0.932 45 H 0.002 0.998 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.105 0.895 49 H 0.113 0.887 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.086 4.992 10.279 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.000 4.000 4 N -0.129 5.129 5 N -0.135 5.135 6 C -0.056 4.056 7 C -0.138 4.138 8 C -0.320 4.320 9 C 0.399 3.601 10 O -0.419 6.419 11 O -0.263 6.263 12 C 0.048 3.952 13 C -0.170 4.170 14 C 0.020 3.980 15 N -0.334 5.334 16 C -0.396 4.396 17 H 0.088 0.912 18 C -0.245 4.245 19 N -0.581 5.581 20 Si 0.798 3.202 21 H -0.200 1.200 22 H -0.221 1.221 23 H -0.203 1.203 24 C 0.055 3.945 25 C -0.160 4.160 26 C 0.015 3.985 27 C -0.160 4.160 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.144 0.856 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.032 0.968 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.124 0.876 49 H 0.131 0.869 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.718 5.246 11.186 29.436 hybrid contribution 1.612 -0.518 -1.062 1.998 sum -25.106 4.728 10.124 27.481 Atomic orbital electron populations 1.21670 0.92318 1.03021 1.03214 1.21882 0.98173 0.94718 1.02682 1.22336 0.71136 0.99770 1.06717 1.48638 1.07741 1.54354 1.02165 1.77049 1.00876 1.27225 1.08341 1.22619 0.94595 0.96733 0.91663 1.20368 0.91191 1.04239 0.98034 1.19137 0.91089 1.28278 0.93491 1.20388 0.82277 0.81430 0.76002 1.90808 1.62519 1.33765 1.54822 1.86726 1.42826 1.34044 1.62718 1.22755 0.83240 0.99664 0.89513 1.22328 0.99018 1.02372 0.93319 1.20962 0.89312 0.90013 0.97666 1.44362 1.53027 1.32547 1.03430 1.19490 0.98805 1.20085 1.01189 0.91182 1.25847 0.95114 1.02991 1.00529 1.70164 1.07284 1.41465 1.39182 0.85304 0.76544 0.79732 0.78629 1.20044 1.22064 1.20275 1.20582 0.91824 0.99690 0.82425 1.22174 0.96697 0.96506 1.00624 1.21722 0.88681 0.95305 0.92774 1.20786 1.03952 1.05516 0.85706 0.91735 0.90787 0.91827 0.91359 0.92718 0.87521 0.85617 0.89102 0.88505 0.90819 0.91660 0.90878 0.90937 0.96790 0.91363 0.93915 0.91339 0.98033 0.91464 0.90593 0.87633 0.86870 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.91 71.98 0.71 -0.05 16 2 C -0.14 -1.32 6.26 30.59 0.19 -1.13 16 3 C 0.12 1.25 6.21 86.38 0.54 1.78 16 4 N -0.35 -7.00 3.58 -332.97 -1.19 -8.19 16 5 N -0.31 -7.94 12.50 -46.65 -0.58 -8.52 16 6 C 0.11 2.97 7.27 43.53 0.32 3.28 16 7 C -0.08 -1.75 10.28 71.24 0.73 -1.01 16 8 C -0.31 -8.83 6.00 -20.16 -0.12 -8.95 16 9 C 0.56 18.66 7.09 70.20 0.50 19.16 16 10 O -0.53 -20.48 16.37 19.77 0.32 -20.16 16 11 O -0.35 -12.06 9.89 -56.63 -0.56 -12.62 16 12 C 0.10 3.86 2.42 30.73 0.07 3.93 16 13 C -0.13 -4.77 5.75 30.78 0.18 -4.59 16 14 C 0.15 6.26 6.51 86.36 0.56 6.82 16 15 N -0.61 -31.08 2.99 -699.11 -2.09 -33.17 16 16 C -0.27 -14.58 9.58 84.03 0.81 -13.77 16 17 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 18 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 19 N -0.94 -55.19 11.20 21.65 0.24 -54.95 16 20 Si 0.97 44.50 29.59 68.60 2.03 46.53 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 C 0.18 8.87 5.30 86.36 0.46 9.32 16 25 C -0.12 -4.79 5.74 30.67 0.18 -4.62 16 26 C 0.15 3.27 7.01 42.17 0.30 3.56 16 27 C -0.10 -1.47 9.93 71.24 0.71 -0.76 16 28 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.13 0.57 7.01 -2.38 -0.02 0.55 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 1.73 8.14 -2.38 -0.02 1.72 16 37 H 0.07 1.69 8.01 -2.39 -0.02 1.67 16 38 H 0.07 2.65 7.16 -2.39 -0.02 2.64 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 2.77 7.93 -2.39 -0.02 2.75 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.07 3.73 6.06 -2.39 -0.01 3.72 16 45 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 47 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 48 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.11 0.81 7.05 -2.39 -0.02 0.80 16 50 H 0.08 1.37 7.96 -2.39 -0.02 1.35 16 Total: -1.00 -72.30 407.12 5.62 -66.68 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.91 Total: 13.76 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 6.54 Total: 10.65 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -3.62 Total: -104.83 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -0.24 Total: -32.78 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -72.30 5.62 -66.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121119228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.009 kcal (2) G-P(sol) polarization free energy of solvation -72.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds