Wall clock time and date at job start Tue Mar 31 2020 18:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46983 * 2 1 4 4 H 1.09004 * 109.47301 * 55.00021 * 3 2 1 5 5 C 1.50698 * 109.47331 * 175.00018 * 3 2 1 6 6 H 1.08002 * 120.00105 * 120.00026 * 5 3 2 7 7 C 1.37875 * 119.99934 * 300.00170 * 5 3 2 8 8 N 1.31515 * 119.99883 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99935 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46819 * 89.99993 * 9 7 5 11 11 H 1.48507 * 109.46923 * 209.99806 * 9 7 5 12 12 H 1.48496 * 109.47245 * 330.00017 * 9 7 5 13 13 N 1.46505 * 109.47016 * 295.00094 * 3 2 1 14 14 C 1.34773 * 119.99686 * 85.00165 * 13 3 2 15 15 O 1.21280 * 120.00389 * 355.56628 * 14 13 3 16 16 C 1.50700 * 119.99775 * 175.56734 * 14 13 3 17 17 C 1.50707 * 112.85035 * 65.04395 * 16 14 13 18 18 O 1.21277 * 120.00107 * 233.87371 * 17 16 14 19 19 N 1.34776 * 119.99465 * 53.87080 * 17 16 14 20 20 C 1.46500 * 119.99690 * 174.68649 * 19 17 16 21 21 H 1.09004 * 109.47446 * 34.99897 * 20 19 17 22 22 C 1.53003 * 109.46998 * 275.00222 * 20 19 17 23 23 C 1.53005 * 109.47122 * 65.00292 * 22 20 19 24 24 C 1.52997 * 109.47550 * 155.00333 * 20 19 17 25 25 C 1.47207 * 109.46819 * 295.00027 * 24 20 19 26 26 N 3.97804 * 78.52943 * 241.16965 * 2 1 3 27 27 C 1.53783 * 113.69367 * 196.31421 * 16 14 13 28 28 C 1.53781 * 87.08024 * 89.12753 * 27 16 14 29 29 C 1.53778 * 87.08295 * 25.43396 * 28 27 16 30 30 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47148 * 299.99652 * 1 2 3 32 32 H 1.09002 * 109.46877 * 59.99997 * 1 2 3 33 33 H 1.09005 * 109.47192 * 240.00443 * 2 1 3 34 34 H 1.08995 * 109.47524 * 119.99992 * 2 1 3 35 35 H 0.97005 * 119.99966 * 179.97438 * 8 7 5 36 36 H 0.96999 * 119.99592 * 264.99327 * 13 3 2 37 37 H 0.96991 * 120.00330 * 354.68866 * 19 17 16 38 38 H 1.08998 * 109.46959 * 184.99854 * 22 20 19 39 39 H 1.08999 * 109.47031 * 304.99675 * 22 20 19 40 40 H 1.08998 * 109.46846 * 299.99631 * 23 22 20 41 41 H 1.08994 * 109.47228 * 59.99964 * 23 22 20 42 42 H 1.09001 * 109.46932 * 180.02562 * 23 22 20 43 43 H 1.08992 * 109.47753 * 175.00260 * 24 20 19 44 44 H 1.09005 * 109.46905 * 54.99364 * 24 20 19 45 45 H 1.08996 * 113.61402 * 203.67818 * 27 16 14 46 46 H 1.08998 * 113.61164 * 334.58185 * 27 16 14 47 47 H 1.09002 * 113.61512 * 270.88670 * 28 27 16 48 48 H 1.09001 * 113.68793 * 139.99518 * 28 27 16 49 49 H 1.08999 * 113.61796 * 220.01482 * 29 28 27 50 50 H 1.09000 * 113.69309 * 89.12528 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 5.4540 0.8797 1.3357 9 14 3.0963 0.1101 2.5707 10 1 2.8745 -1.3259 2.2645 11 1 3.7941 0.2360 3.8755 12 1 1.7880 0.8094 2.6395 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3689 2.5629 -0.4646 16 6 0.0729 3.4243 -2.6168 17 6 0.0174 2.5460 -3.8403 18 8 0.6650 2.8351 -4.8241 19 7 -0.7519 1.4394 -3.8410 20 6 -0.8978 0.6496 -5.0662 21 1 0.0396 0.6649 -5.6223 22 6 -2.0119 1.2468 -5.9283 23 6 -1.6019 2.6451 -6.3947 24 6 -1.2520 -0.7939 -4.7034 25 6 -0.1283 -1.4069 -3.9764 26 7 0.7389 -1.8800 -3.4154 27 6 -1.1580 4.3317 -2.4536 28 6 -0.1869 5.4347 -2.0006 29 6 0.8950 4.7084 -2.8171 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 5.8771 0.4819 2.1127 36 1 2.2719 2.1232 -1.9978 37 1 -1.2089 1.1659 -3.0304 38 1 -2.1808 0.6094 -6.7962 39 1 -2.9286 1.3133 -5.3424 40 1 -1.4329 3.2825 -5.5268 41 1 -0.6852 2.5785 -6.9806 42 1 -2.3958 3.0707 -7.0084 43 1 -1.4475 -1.3600 -5.6140 44 1 -2.1407 -0.8023 -4.0724 45 1 -1.6640 4.5542 -3.3930 46 1 -1.8416 4.0034 -1.6708 47 1 0.0031 5.4354 -0.9273 48 1 -0.4357 6.4230 -2.3871 49 1 1.8687 4.6842 -2.3278 50 1 0.9515 5.0331 -3.8561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183845070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:41 Heat of formation + Delta-G solvation = -33.307079 kcal Electronic energy + Delta-G solvation = -31507.417641 eV Core-core repulsion = 27535.352699 eV Total energy + Delta-G solvation = -3972.064943 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20462 -39.27603 -37.73873 -36.81229 -35.71580 -35.17244 -32.62160 -32.38076 -31.55022 -30.84965 -28.01244 -26.92082 -25.62867 -24.73715 -22.84819 -22.08896 -21.69346 -20.80107 -19.90959 -19.04799 -18.29732 -17.54795 -16.81154 -16.60445 -16.01711 -15.62272 -15.53276 -14.96757 -14.83569 -14.43466 -14.37270 -14.17353 -13.86033 -13.50416 -13.28793 -13.09350 -12.92270 -12.75448 -12.56503 -12.38225 -12.25115 -12.08979 -11.96557 -11.78081 -11.72609 -11.65535 -11.35353 -11.27930 -11.10413 -11.08646 -10.96404 -10.85149 -10.62348 -10.40268 -9.92724 -9.80656 -9.53002 -9.27597 -9.23878 -9.11519 -8.75940 -8.13018 -6.20427 -4.23050 2.47820 2.70196 2.74723 2.86824 3.11174 3.24001 3.34384 3.38009 3.70894 3.76677 4.31134 4.36446 4.48857 4.52743 4.67199 4.74289 4.77240 4.80181 4.98327 5.08714 5.12083 5.13007 5.20291 5.43327 5.50659 5.60960 5.62128 5.73861 5.78969 5.89327 5.93158 5.95483 6.01096 6.01502 6.06251 6.14916 6.18818 6.28871 6.37806 6.63497 6.67489 6.79590 6.89939 7.19739 7.27906 7.31521 7.47855 7.55544 8.06250 8.11739 8.48034 8.71563 8.83474 9.39566 10.91724 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.004690 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.501920 B = 5969.036711 C = 7211.480616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.245 3.755 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.261 1.261 13 N -0.689 5.689 14 C 0.528 3.472 15 O -0.538 6.538 16 C -0.138 4.138 17 C 0.544 3.456 18 O -0.524 6.524 19 N -0.725 5.725 20 C 0.146 3.854 21 H 0.100 0.900 22 C -0.131 4.131 23 C -0.147 4.147 24 C -0.032 4.032 25 C 0.182 3.818 26 N -0.402 5.402 27 C -0.105 4.105 28 C -0.139 4.139 29 C -0.107 4.107 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.267 0.733 36 H 0.396 0.604 37 H 0.404 0.596 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.797 2.827 -14.836 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 C 0.142 3.858 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.203 1.203 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.336 5.336 14 C 0.311 3.689 15 O -0.417 6.417 16 C -0.145 4.145 17 C 0.330 3.670 18 O -0.400 6.400 19 N -0.378 5.378 20 C 0.040 3.960 21 H 0.118 0.882 22 C -0.170 4.170 23 C -0.205 4.205 24 C -0.072 4.072 25 C -0.137 4.137 26 N -0.078 5.078 27 C -0.143 4.143 28 C -0.177 4.177 29 C -0.145 4.145 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.229 0.771 37 H 0.239 0.761 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.142 0.858 44 H 0.130 0.870 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.099 0.901 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.398 2.188 -13.927 22.393 hybrid contribution -0.562 -0.616 0.601 1.028 sum -17.960 1.571 -13.326 22.419 Atomic orbital electron populations 1.21851 0.97056 0.98646 1.01922 1.22269 0.94276 0.99796 1.01287 1.19191 0.95785 0.88543 0.82265 0.93355 1.21028 0.88524 1.39922 1.07852 0.90198 1.24814 0.94846 0.95049 0.97639 1.69869 1.08664 1.44414 1.29767 0.86916 0.80903 0.80041 0.80923 1.20272 1.22130 1.18521 1.46178 1.14542 1.54800 1.18046 1.19340 0.83072 0.79569 0.86913 1.90676 1.49513 1.60774 1.40706 1.22459 1.02962 0.95681 0.93368 1.19921 0.78089 0.80507 0.88478 1.90701 1.42581 1.71635 1.35074 1.46095 1.51074 1.26952 1.13649 1.21040 1.01029 0.87407 0.86551 0.88202 1.21942 0.97762 0.97955 0.99323 1.21787 1.01195 0.95954 1.01531 1.19590 0.92315 0.94640 1.00681 1.28968 0.95140 0.94768 0.94787 1.81372 1.09926 1.08408 1.08103 1.22761 0.94890 0.94283 1.02380 1.22837 0.96066 0.97833 1.00947 1.22865 0.98354 0.91227 1.02086 0.95313 0.92860 0.93274 0.92133 0.92853 0.92281 0.77079 0.76107 0.90511 0.91202 0.92534 0.91969 0.93216 0.85833 0.86964 0.89509 0.89110 0.89458 0.90765 0.90093 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.47 37.16 0.31 -2.41 16 2 C -0.14 -3.15 5.11 -26.73 -0.14 -3.29 16 3 C 0.25 5.84 1.83 -69.08 -0.13 5.71 16 4 H 0.05 1.25 6.70 -51.93 -0.35 0.90 16 5 C -0.54 -14.76 9.31 -34.44 -0.32 -15.08 16 6 H 0.08 2.35 7.98 -52.49 -0.42 1.93 16 7 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 8 N -0.89 -26.89 13.96 55.43 0.77 -26.11 16 9 Si 0.88 22.15 24.41 -169.99 -4.15 18.00 16 10 H -0.28 -6.82 6.83 56.52 0.39 -6.44 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 13 N -0.69 -13.75 5.02 -54.93 -0.28 -14.03 16 14 C 0.53 9.24 4.83 -10.99 -0.05 9.19 16 15 O -0.54 -10.50 12.75 5.56 0.07 -10.43 16 16 C -0.14 -1.89 1.07 -155.99 -0.17 -2.06 16 17 C 0.54 7.12 5.23 -10.98 -0.06 7.06 16 18 O -0.52 -7.84 13.52 5.56 0.08 -7.76 16 19 N -0.72 -7.61 4.66 -53.80 -0.25 -7.87 16 20 C 0.15 1.15 2.23 -67.93 -0.15 1.00 16 21 H 0.10 0.99 7.51 -51.93 -0.39 0.60 16 22 C -0.13 -0.77 5.61 -26.73 -0.15 -0.92 16 23 C -0.15 -1.22 8.59 37.16 0.32 -0.90 16 24 C -0.03 -0.19 5.25 -29.52 -0.16 -0.34 16 25 C 0.18 2.12 15.14 -20.76 -0.31 1.80 16 26 N -0.40 -6.52 18.54 42.15 0.78 -5.74 16 27 C -0.11 -1.20 7.08 -25.92 -0.18 -1.38 16 28 C -0.14 -1.63 7.80 -25.92 -0.20 -1.83 16 29 C -0.11 -1.40 6.95 -25.92 -0.18 -1.58 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.10 7.80 -51.93 -0.41 0.70 16 32 H 0.05 0.90 5.51 -51.93 -0.29 0.62 16 33 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.05 1.30 3.22 -51.93 -0.17 1.13 16 35 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.40 7.77 8.54 -40.82 -0.35 7.42 16 37 H 0.40 4.21 8.30 -40.82 -0.34 3.87 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.57 5.76 -51.93 -0.30 0.27 16 41 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 46 H 0.09 1.10 7.35 -51.93 -0.38 0.72 16 47 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 50 H 0.10 1.24 7.50 -51.93 -0.39 0.85 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -34.22 395.15 -6.69 -40.91 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -8.01 Total: 9.91 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.66 Total: -2.84 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 1.03 Total: -53.75 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.15 Total: -18.20 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.15 Total: 18.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.22 -6.69 -40.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183845070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.604 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds