Wall clock time and date at job start Tue Mar 31 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46983 * 2 1 4 4 H 1.09004 * 109.47301 * 55.00021 * 3 2 1 5 5 C 1.50698 * 109.47331 * 175.00018 * 3 2 1 6 6 H 1.08002 * 120.00105 * 120.00026 * 5 3 2 7 7 C 1.37875 * 119.99934 * 300.00170 * 5 3 2 8 8 N 1.31515 * 119.99883 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99935 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.46819 * 89.99993 * 9 7 5 11 11 H 1.48507 * 109.46923 * 209.99806 * 9 7 5 12 12 H 1.48496 * 109.47245 * 330.00017 * 9 7 5 13 13 N 1.46505 * 109.47016 * 295.00094 * 3 2 1 14 14 C 1.34773 * 119.99686 * 85.00165 * 13 3 2 15 15 O 1.21280 * 120.00389 * 355.56628 * 14 13 3 16 16 C 1.50700 * 119.99775 * 175.56734 * 14 13 3 17 17 C 1.50707 * 112.85035 * 65.04395 * 16 14 13 18 18 O 1.21277 * 120.00107 * 233.87371 * 17 16 14 19 19 N 1.34776 * 119.99465 * 53.87080 * 17 16 14 20 20 C 1.46500 * 119.99690 * 174.68649 * 19 17 16 21 21 H 1.09004 * 109.47446 * 34.99897 * 20 19 17 22 22 C 1.53003 * 109.46998 * 275.00222 * 20 19 17 23 23 C 1.53005 * 109.47122 * 65.00292 * 22 20 19 24 24 C 1.52997 * 109.47550 * 155.00333 * 20 19 17 25 25 C 1.47207 * 109.46819 * 295.00027 * 24 20 19 26 26 N 3.97804 * 78.52943 * 241.16965 * 2 1 3 27 27 C 1.53783 * 113.69367 * 196.31421 * 16 14 13 28 28 C 1.53781 * 87.08024 * 89.12753 * 27 16 14 29 29 C 1.53778 * 87.08295 * 25.43396 * 28 27 16 30 30 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47148 * 299.99652 * 1 2 3 32 32 H 1.09002 * 109.46877 * 59.99997 * 1 2 3 33 33 H 1.09005 * 109.47192 * 240.00443 * 2 1 3 34 34 H 1.08995 * 109.47524 * 119.99992 * 2 1 3 35 35 H 0.97005 * 119.99966 * 179.97438 * 8 7 5 36 36 H 0.96999 * 119.99592 * 264.99327 * 13 3 2 37 37 H 0.96991 * 120.00330 * 354.68866 * 19 17 16 38 38 H 1.08998 * 109.46959 * 184.99854 * 22 20 19 39 39 H 1.08999 * 109.47031 * 304.99675 * 22 20 19 40 40 H 1.08998 * 109.46846 * 299.99631 * 23 22 20 41 41 H 1.08994 * 109.47228 * 59.99964 * 23 22 20 42 42 H 1.09001 * 109.46932 * 180.02562 * 23 22 20 43 43 H 1.08992 * 109.47753 * 175.00260 * 24 20 19 44 44 H 1.09005 * 109.46905 * 54.99364 * 24 20 19 45 45 H 1.08996 * 113.61402 * 203.67818 * 27 16 14 46 46 H 1.08998 * 113.61164 * 334.58185 * 27 16 14 47 47 H 1.09002 * 113.61512 * 270.88670 * 28 27 16 48 48 H 1.09001 * 113.68793 * 139.99518 * 28 27 16 49 49 H 1.08999 * 113.61796 * 220.01482 * 29 28 27 50 50 H 1.09000 * 113.69309 * 89.12528 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2279 8 7 5.4540 0.8797 1.3357 9 14 3.0963 0.1101 2.5707 10 1 2.8745 -1.3259 2.2645 11 1 3.7941 0.2360 3.8755 12 1 1.7880 0.8094 2.6395 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3669 15 8 -0.3689 2.5629 -0.4646 16 6 0.0729 3.4243 -2.6168 17 6 0.0174 2.5460 -3.8403 18 8 0.6650 2.8351 -4.8241 19 7 -0.7519 1.4394 -3.8410 20 6 -0.8978 0.6496 -5.0662 21 1 0.0396 0.6649 -5.6223 22 6 -2.0119 1.2468 -5.9283 23 6 -1.6019 2.6451 -6.3947 24 6 -1.2520 -0.7939 -4.7034 25 6 -0.1283 -1.4069 -3.9764 26 7 0.7389 -1.8800 -3.4154 27 6 -1.1580 4.3317 -2.4536 28 6 -0.1869 5.4347 -2.0006 29 6 0.8950 4.7084 -2.8171 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 5.8771 0.4819 2.1127 36 1 2.2719 2.1232 -1.9978 37 1 -1.2089 1.1659 -3.0304 38 1 -2.1808 0.6094 -6.7962 39 1 -2.9286 1.3133 -5.3424 40 1 -1.4329 3.2825 -5.5268 41 1 -0.6852 2.5785 -6.9806 42 1 -2.3958 3.0707 -7.0084 43 1 -1.4475 -1.3600 -5.6140 44 1 -2.1407 -0.8023 -4.0724 45 1 -1.6640 4.5542 -3.3930 46 1 -1.8416 4.0034 -1.6708 47 1 0.0031 5.4354 -0.9273 48 1 -0.4357 6.4230 -2.3871 49 1 1.8687 4.6842 -2.3278 50 1 0.9515 5.0331 -3.8561 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183845070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:40 Heat of formation + Delta-G solvation = -58.289448 kcal Electronic energy + Delta-G solvation = -31508.500958 eV Core-core repulsion = 27535.352699 eV Total energy + Delta-G solvation = -3973.148260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34953 -40.44685 -38.86777 -37.88196 -36.96908 -36.54413 -34.47431 -33.42739 -33.22704 -31.48313 -29.73012 -28.23069 -26.65059 -25.43729 -24.74003 -23.45956 -22.60121 -21.68676 -21.52301 -20.47417 -19.40157 -18.55496 -18.24901 -17.65339 -17.58451 -17.04164 -16.67092 -16.41096 -16.05013 -15.58519 -15.43283 -15.13999 -15.04766 -15.01851 -14.56931 -14.22501 -14.12220 -13.89165 -13.78880 -13.76559 -13.63281 -13.41283 -13.04465 -13.01245 -12.95986 -12.85280 -12.55446 -12.46617 -12.41126 -12.19065 -11.96369 -11.91428 -11.85338 -11.60879 -11.46204 -11.42127 -11.32026 -10.94677 -10.86194 -10.55751 -10.05832 -9.86276 -8.44397 -6.50716 1.21739 1.27368 1.37627 1.40735 1.56008 1.84228 1.91537 2.14917 2.19214 2.25971 2.91002 3.08921 3.42769 3.46361 3.65103 3.71663 3.80588 3.85210 4.14730 4.20705 4.22494 4.25714 4.36473 4.42874 4.55238 4.65521 4.70496 4.74552 4.76319 4.80350 4.93418 4.93920 4.97974 5.02909 5.03949 5.05762 5.09453 5.14759 5.21551 5.30743 5.31258 5.38162 5.45670 5.53722 5.55803 5.61933 6.04341 6.38482 6.49918 6.71621 6.72570 7.09343 7.13333 7.27594 8.71376 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012084 B = 0.004690 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.501920 B = 5969.036711 C = 7211.480616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.133 4.133 3 C 0.256 3.744 4 H 0.032 0.968 5 C -0.538 4.538 6 H 0.047 0.953 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.939 3.061 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.251 1.251 13 N -0.696 5.696 14 C 0.534 3.466 15 O -0.553 6.553 16 C -0.141 4.141 17 C 0.545 3.455 18 O -0.547 6.547 19 N -0.718 5.718 20 C 0.142 3.858 21 H 0.076 0.924 22 C -0.121 4.121 23 C -0.149 4.149 24 C -0.028 4.028 25 C 0.213 3.787 26 N -0.494 5.494 27 C -0.089 4.089 28 C -0.135 4.135 29 C -0.110 4.110 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.270 0.730 36 H 0.395 0.605 37 H 0.406 0.594 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.063 0.937 43 H 0.170 0.830 44 H 0.148 0.852 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.102 0.898 49 H 0.058 0.942 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.029 2.565 -16.166 28.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.172 4.172 3 C 0.152 3.848 4 H 0.050 0.950 5 C -0.576 4.576 6 H 0.066 0.934 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.766 3.234 10 H -0.194 1.194 11 H -0.216 1.216 12 H -0.176 1.176 13 N -0.344 5.344 14 C 0.319 3.681 15 O -0.433 6.433 16 C -0.147 4.147 17 C 0.330 3.670 18 O -0.425 6.425 19 N -0.370 5.370 20 C 0.037 3.963 21 H 0.094 0.906 22 C -0.159 4.159 23 C -0.206 4.206 24 C -0.067 4.067 25 C -0.104 4.104 26 N -0.172 5.172 27 C -0.127 4.127 28 C -0.172 4.172 29 C -0.148 4.148 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.229 0.771 37 H 0.242 0.758 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.187 0.813 44 H 0.166 0.834 45 H 0.132 0.868 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.120 0.880 49 H 0.077 0.923 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -21.674 1.922 -15.277 26.586 hybrid contribution 0.778 -0.451 0.894 1.268 sum -20.896 1.471 -14.383 25.410 Atomic orbital electron populations 1.21723 0.94332 1.00032 1.02153 1.22143 0.96638 0.98333 1.00048 1.18785 0.93067 0.89493 0.83499 0.95035 1.21283 0.90613 1.38862 1.06834 0.93446 1.25589 0.95827 0.95671 0.99967 1.69990 1.10399 1.46010 1.30864 0.85987 0.79634 0.79550 0.78213 1.19404 1.21571 1.17552 1.46050 1.15810 1.55708 1.16793 1.19839 0.81660 0.78620 0.87964 1.90660 1.49699 1.61115 1.41787 1.22433 1.04773 0.95836 0.91671 1.19743 0.78368 0.81126 0.87751 1.90700 1.43697 1.72350 1.35740 1.46154 1.49973 1.26130 1.14761 1.21244 1.01156 0.88388 0.85513 0.90583 1.21915 0.97169 0.96682 1.00157 1.21776 1.00756 0.97425 1.00671 1.20075 0.90990 0.92989 1.02682 1.30070 0.94648 0.92773 0.92957 1.81405 1.12847 1.11505 1.11401 1.22784 0.93734 0.92662 1.03529 1.22810 0.95337 0.99488 0.99591 1.22894 0.97696 0.91447 1.02737 0.93319 0.93505 0.92078 0.93279 0.94151 0.92030 0.77145 0.75844 0.87472 0.89124 0.94451 0.94130 0.91827 0.81280 0.83427 0.86780 0.89405 0.91414 0.87981 0.92286 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.47 71.98 0.61 -4.16 16 2 C -0.13 -6.09 5.11 30.59 0.16 -5.93 16 3 C 0.26 12.45 1.83 44.24 0.08 12.53 16 4 H 0.03 1.66 6.70 -2.38 -0.02 1.64 16 5 C -0.54 -30.92 9.31 25.60 0.24 -30.68 16 6 H 0.05 2.96 7.98 -2.91 -0.02 2.94 16 7 C 0.03 1.72 5.45 84.65 0.46 2.18 16 8 N -0.93 -58.37 13.96 21.45 0.30 -58.07 16 9 Si 0.94 46.36 24.41 68.60 1.67 48.03 16 10 H -0.27 -12.80 6.83 99.48 0.68 -12.12 16 11 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 12 H -0.25 -11.93 6.53 99.48 0.65 -11.28 16 13 N -0.70 -28.54 5.02 -446.09 -2.24 -30.78 16 14 C 0.53 18.54 4.83 87.66 0.42 18.96 16 15 O -0.55 -21.07 12.75 -3.03 -0.04 -21.11 16 16 C -0.14 -3.73 1.07 -53.14 -0.06 -3.78 16 17 C 0.54 13.64 5.23 87.66 0.46 14.10 16 18 O -0.55 -16.15 13.52 -3.02 -0.04 -16.19 16 19 N -0.72 -13.47 4.66 -442.52 -2.06 -15.53 16 20 C 0.14 1.80 2.23 44.99 0.10 1.90 16 21 H 0.08 1.39 7.51 -2.38 -0.02 1.37 16 22 C -0.12 -0.89 5.61 30.60 0.17 -0.71 16 23 C -0.15 -2.06 8.59 71.98 0.62 -1.45 16 24 C -0.03 -0.20 5.25 28.79 0.15 -0.05 16 25 C 0.21 4.56 15.14 89.44 1.35 5.92 16 26 N -0.49 -16.04 18.54 20.01 0.37 -15.67 16 27 C -0.09 -1.82 7.08 31.12 0.22 -1.60 16 28 C -0.13 -2.94 7.80 31.12 0.24 -2.70 16 29 C -0.11 -2.83 6.95 31.12 0.22 -2.61 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.84 7.80 -2.39 -0.02 1.83 16 32 H 0.06 2.14 5.51 -2.39 -0.01 2.13 16 33 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.04 1.94 3.22 -2.39 -0.01 1.94 16 35 H 0.27 15.82 8.31 -92.70 -0.77 15.05 16 36 H 0.40 16.30 8.54 -92.71 -0.79 15.50 16 37 H 0.41 7.30 8.30 -92.71 -0.77 6.53 16 38 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.04 0.66 5.76 -2.39 -0.01 0.64 16 41 H 0.04 0.73 7.92 -2.39 -0.02 0.71 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.17 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.15 0.21 8.14 -2.38 -0.02 0.19 16 45 H 0.11 1.75 8.09 -2.39 -0.02 1.73 16 46 H 0.09 1.90 7.35 -2.39 -0.02 1.88 16 47 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.10 1.66 8.14 -2.39 -0.02 1.65 16 49 H 0.06 1.76 8.09 -2.39 -0.02 1.74 16 50 H 0.11 2.64 7.50 -2.39 -0.02 2.62 16 Total: -1.00 -79.90 395.15 2.73 -77.16 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -0.67 Total: 30.25 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.45 Total: 1.90 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -3.63 Total: -120.05 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.08 Total: -37.30 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.67 Total: 48.03 kcal Total: -79.90 2.73 -77.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183845070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.875 kcal (2) G-P(sol) polarization free energy of solvation -79.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds