Wall clock time and date at job start Tue Mar 31 2020 19:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47073 * 2 1 4 4 N 1.46910 * 109.47107 * 185.53088 * 3 2 1 5 5 C 1.46898 * 111.00066 * 296.68802 * 4 3 2 6 6 C 1.53008 * 109.46991 * 301.58687 * 5 4 3 7 7 C 1.46899 * 111.00109 * 172.73049 * 4 3 2 8 8 C 1.52996 * 109.47196 * 190.00024 * 7 4 3 9 9 N 1.46497 * 109.47229 * 179.97438 * 8 7 4 10 10 C 1.34776 * 120.00165 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99858 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00241 * 180.02562 * 10 9 8 13 13 C 1.39942 * 120.00214 * 174.82674 * 12 10 9 14 14 C 1.38964 * 120.03472 * 326.53892 * 13 12 10 15 15 C 1.38150 * 120.06731 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.13853 * 359.72588 * 15 14 13 17 17 C 1.38904 * 120.06976 * 0.55127 * 16 15 14 18 18 O 1.35754 * 120.03784 * 179.72388 * 17 16 15 19 19 C 1.34824 * 117.00269 * 174.16016 * 18 17 16 20 20 H 1.08002 * 119.99806 * 5.13837 * 19 18 17 21 21 C 1.38651 * 119.99897 * 185.13029 * 19 18 17 22 22 N 1.31561 * 119.99987 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00259 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47112 * 89.99626 * 23 21 19 25 25 H 1.48496 * 109.47108 * 209.99687 * 23 21 19 26 26 H 1.48504 * 109.46724 * 329.99757 * 23 21 19 27 27 C 1.38699 * 120.03916 * 146.56211 * 13 12 10 28 28 H 1.08999 * 109.46876 * 59.99809 * 1 2 3 29 29 H 1.08997 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46864 * 299.99976 * 1 2 3 31 31 H 1.08998 * 109.47479 * 239.99601 * 2 1 3 32 32 H 1.09004 * 109.47017 * 119.99471 * 2 1 3 33 33 H 1.08997 * 109.47138 * 65.53606 * 3 2 1 34 34 H 1.09000 * 109.47578 * 305.53223 * 3 2 1 35 35 H 1.08998 * 109.46989 * 61.58073 * 5 4 3 36 36 H 1.08996 * 109.47158 * 181.58199 * 5 4 3 37 37 H 1.09003 * 109.46906 * 184.87372 * 6 5 4 38 38 H 1.09001 * 109.46595 * 304.86650 * 6 5 4 39 39 H 1.08993 * 109.46975 * 64.87191 * 6 5 4 40 40 H 1.08999 * 109.46663 * 69.99770 * 7 4 3 41 41 H 1.09003 * 109.47098 * 310.00618 * 7 4 3 42 42 H 1.09000 * 109.46816 * 60.00028 * 8 7 4 43 43 H 1.09000 * 109.46949 * 300.00677 * 8 7 4 44 44 H 0.96996 * 119.99956 * 0.02562 * 9 8 7 45 45 H 0.96998 * 120.00065 * 354.81988 * 12 10 9 46 46 H 1.07998 * 119.96183 * 0.02562 * 14 13 12 47 47 H 1.08003 * 119.93239 * 179.97438 * 15 14 13 48 48 H 1.08007 * 119.96329 * 180.27821 * 16 15 14 49 49 H 0.97000 * 120.00123 * 180.02562 * 22 21 19 50 50 H 1.08012 * 120.06588 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5030 1.4447 -0.1335 5 6 4.1377 0.7904 1.0185 6 6 3.7292 1.5126 2.3041 7 6 4.0135 2.8107 -0.3104 8 6 5.4939 2.7564 -0.6927 9 7 6.0029 4.1187 -0.8697 10 6 7.2917 4.3177 -1.2101 11 8 8.0318 3.3665 -1.3708 12 7 7.7600 5.5709 -1.3724 13 6 9.1212 5.7828 -1.6191 14 6 10.0701 4.9410 -1.0518 15 6 11.4140 5.1498 -1.2944 16 6 11.8187 6.1923 -2.1060 17 6 10.8753 7.0408 -2.6713 18 8 11.2739 8.0682 -3.4641 19 6 10.3064 8.7789 -4.0778 20 1 9.2678 8.5744 -3.8635 21 6 10.6448 9.7723 -4.9838 22 7 9.7007 10.4661 -5.5823 23 14 12.4412 10.1257 -5.3548 24 1 12.8870 9.2816 -6.4924 25 1 12.6007 11.5588 -5.7094 26 1 13.2637 9.8174 -4.1575 27 6 9.5246 6.8335 -2.4296 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7599 1.9269 0.9354 34 1 1.5981 1.9842 -0.8363 35 1 3.8161 -0.2498 1.0682 36 1 5.2213 0.8308 0.9077 37 1 4.2670 1.0825 3.1490 38 1 3.9731 2.5715 2.2191 39 1 2.6565 1.3981 2.4598 40 1 3.8989 3.3648 0.6213 41 1 3.4521 3.3089 -1.1008 42 1 5.6084 2.2022 -1.6243 43 1 6.0553 2.2581 0.0977 44 1 5.4125 4.8775 -0.7411 45 1 7.1537 6.3261 -1.3184 46 1 9.7567 4.1226 -0.4206 47 1 12.1497 4.4944 -0.8521 48 1 12.8698 6.3503 -2.2974 49 1 9.9374 11.1609 -6.2165 50 1 8.7889 7.4892 -2.8718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266958340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:41 Heat of formation + Delta-G solvation = -23.759066 kcal Electronic energy + Delta-G solvation = -27979.485446 eV Core-core repulsion = 24007.834536 eV Total energy + Delta-G solvation = -3971.650910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.40965 -39.23346 -38.76933 -36.74746 -35.11361 -34.22741 -33.63699 -32.33135 -30.94731 -29.60952 -29.05108 -28.12744 -25.61747 -25.18627 -24.39458 -22.38511 -21.74732 -21.59514 -20.51539 -20.05066 -18.53738 -17.78012 -17.57232 -16.74921 -16.65529 -15.89438 -15.55553 -15.22488 -15.06178 -14.71915 -14.62466 -14.23200 -14.08380 -13.99914 -13.78989 -13.58887 -13.39611 -13.20414 -13.06766 -12.49776 -12.43916 -12.31678 -12.23872 -12.15556 -11.90936 -11.65004 -11.60217 -11.33357 -11.23931 -11.18000 -10.94622 -10.82579 -10.72321 -10.28169 -10.03225 -9.65995 -9.46397 -9.15309 -8.83060 -8.72482 -7.74888 -7.24512 -6.40771 -4.07862 2.00559 2.32283 2.58932 3.22999 3.27364 3.32059 3.42124 3.53334 4.24686 4.27459 4.38345 4.49239 4.55779 4.59565 4.67252 4.78227 4.86409 4.88605 4.91857 4.99365 5.08663 5.12300 5.13759 5.20263 5.29914 5.50807 5.52306 5.58876 5.61389 5.66340 5.71255 5.75251 5.80247 5.92961 5.95090 6.02629 6.19015 6.21832 6.31637 6.46957 6.63062 6.64201 6.74708 6.94494 7.18137 7.24141 7.28594 7.64193 7.79804 8.01430 8.05497 8.63760 8.94994 9.57760 10.66988 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.001821 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.143772 B =15374.848419 C =16349.610439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.052 3.948 4 N -0.532 5.532 5 C 0.040 3.960 6 C -0.194 4.194 7 C 0.040 3.960 8 C 0.143 3.857 9 N -0.747 5.747 10 C 0.705 3.295 11 O -0.569 6.569 12 N -0.682 5.682 13 C 0.199 3.801 14 C -0.198 4.198 15 C -0.064 4.064 16 C -0.203 4.203 17 C 0.175 3.825 18 O -0.217 6.217 19 C -0.389 4.389 20 H 0.105 0.895 21 C 0.063 3.937 22 N -0.882 5.882 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.259 1.259 27 C -0.246 4.246 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.395 0.605 45 H 0.404 0.596 46 H 0.122 0.878 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.279 0.721 50 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.356 -16.623 14.470 27.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.076 4.076 4 N -0.255 5.255 5 C -0.088 4.088 6 C -0.252 4.252 7 C -0.089 4.089 8 C 0.018 3.982 9 N -0.404 5.404 10 C 0.405 3.595 11 O -0.445 6.445 12 N -0.329 5.329 13 C 0.105 3.895 14 C -0.219 4.219 15 C -0.083 4.083 16 C -0.222 4.222 17 C 0.123 3.877 18 O -0.122 6.122 19 C -0.464 4.464 20 H 0.122 0.878 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.183 1.183 27 C -0.268 4.268 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.228 0.772 45 H 0.238 0.762 46 H 0.140 0.860 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.089 0.911 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.436 -17.543 13.696 27.085 hybrid contribution -0.408 1.555 0.499 1.683 sum -15.844 -15.988 14.195 26.611 Atomic orbital electron populations 1.21737 0.95577 1.01838 1.01781 1.21537 0.95448 0.96249 1.02745 1.22209 0.86997 0.97650 1.00733 1.62127 1.05546 1.17158 1.40680 1.22310 1.00187 0.98747 0.87523 1.22418 1.01884 1.01559 0.99370 1.22271 0.95343 0.90293 1.00944 1.21092 0.92407 0.82219 1.02474 1.44988 1.10161 1.09159 1.76079 1.15830 0.81985 0.83508 0.78169 1.90954 1.56456 1.40407 1.56716 1.42578 1.08615 1.07030 1.74657 1.17186 0.80974 0.96016 0.95296 1.20635 0.92061 1.02905 1.06256 1.20525 0.94991 0.96080 0.96702 1.20233 0.98560 0.98207 1.05247 1.18771 0.91438 0.87190 0.90342 1.83600 1.36222 1.37897 1.54481 1.20722 0.88416 1.15072 1.22239 0.87798 1.24457 0.99680 0.95092 0.94775 1.69645 1.32780 1.22236 1.27319 0.86180 0.83691 0.77306 0.79726 1.19894 1.20856 1.18305 1.20891 0.96855 1.03438 1.05619 0.92576 0.92501 0.92939 0.90919 0.92026 0.94308 0.90747 0.90197 0.90082 0.91885 0.92356 0.92407 0.93682 0.90077 0.90608 0.91500 0.77154 0.76164 0.86027 0.86474 0.86423 0.91113 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.68 5.63 -26.73 -0.15 -0.83 16 3 C 0.05 0.32 4.63 -3.82 -0.02 0.30 16 4 N -0.53 -3.85 4.73 -234.62 -1.11 -4.96 16 5 C 0.04 0.27 5.57 -3.82 -0.02 0.25 16 6 C -0.19 -1.16 9.18 37.16 0.34 -0.81 16 7 C 0.04 0.28 4.91 -3.83 -0.02 0.27 16 8 C 0.14 1.40 5.61 -4.05 -0.02 1.37 16 9 N -0.75 -7.91 5.56 -65.23 -0.36 -8.27 16 10 C 0.70 10.80 8.30 -86.92 -0.72 10.08 16 11 O -0.57 -10.97 14.03 5.29 0.07 -10.89 16 12 N -0.68 -10.47 5.35 -14.24 -0.08 -10.54 16 13 C 0.20 3.82 6.27 -83.72 -0.53 3.30 16 14 C -0.20 -3.76 8.65 -39.34 -0.34 -4.10 16 15 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 16 C -0.20 -4.12 9.99 -39.36 -0.39 -4.52 16 17 C 0.18 4.08 6.64 -39.14 -0.26 3.82 16 18 O -0.22 -5.73 8.58 0.05 0.00 -5.73 16 19 C -0.39 -10.89 9.95 30.88 0.31 -10.58 16 20 H 0.10 2.95 5.43 -52.49 -0.29 2.67 16 21 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 22 N -0.88 -25.31 13.96 55.48 0.77 -24.53 16 23 Si 0.91 21.70 28.62 -169.99 -4.86 16.83 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.25 -5.32 9.08 -39.21 -0.36 -5.68 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.34 6.80 -51.93 -0.35 -0.02 16 33 H 0.04 0.23 6.20 -51.93 -0.32 -0.09 16 34 H 0.07 0.45 7.99 -51.93 -0.41 0.04 16 35 H 0.08 0.50 6.59 -51.93 -0.34 0.15 16 36 H 0.08 0.61 6.24 -51.93 -0.32 0.28 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.38 6.21 -51.93 -0.32 0.06 16 39 H 0.06 0.33 6.58 -51.93 -0.34 -0.01 16 40 H 0.05 0.29 6.11 -51.93 -0.32 -0.02 16 41 H 0.08 0.54 7.97 -51.93 -0.41 0.13 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.71 6.44 -51.93 -0.33 0.37 16 44 H 0.40 2.98 8.49 -40.82 -0.35 2.63 16 45 H 0.40 4.89 8.83 -40.82 -0.36 4.53 16 46 H 0.12 2.29 6.41 -52.49 -0.34 1.96 16 47 H 0.12 1.76 8.06 -52.48 -0.42 1.33 16 48 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 49 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.14 2.99 5.64 -52.48 -0.30 2.70 16 LS Contribution 397.24 15.07 5.99 5.99 Total: -1.00 -32.53 397.24 -9.51 -42.04 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.63 Total: 7.46 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.30 Total: -7.39 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.77 Total: -48.31 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.07 Total: -16.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.53 -9.51 -42.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266958340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.285 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds