Wall clock time and date at job start Tue Mar 31 2020 19:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47073 * 2 1 4 4 N 1.46910 * 109.47107 * 185.53088 * 3 2 1 5 5 C 1.46898 * 111.00066 * 296.68802 * 4 3 2 6 6 C 1.53008 * 109.46991 * 301.58687 * 5 4 3 7 7 C 1.46899 * 111.00109 * 172.73049 * 4 3 2 8 8 C 1.52996 * 109.47196 * 190.00024 * 7 4 3 9 9 N 1.46497 * 109.47229 * 179.97438 * 8 7 4 10 10 C 1.34776 * 120.00165 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99858 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00241 * 180.02562 * 10 9 8 13 13 C 1.39942 * 120.00214 * 174.82674 * 12 10 9 14 14 C 1.38964 * 120.03472 * 326.53892 * 13 12 10 15 15 C 1.38150 * 120.06731 * 180.02562 * 14 13 12 16 16 C 1.38169 * 120.13853 * 359.72588 * 15 14 13 17 17 C 1.38904 * 120.06976 * 0.55127 * 16 15 14 18 18 O 1.35754 * 120.03784 * 179.72388 * 17 16 15 19 19 C 1.34824 * 117.00269 * 174.16016 * 18 17 16 20 20 H 1.08002 * 119.99806 * 5.13837 * 19 18 17 21 21 C 1.38651 * 119.99897 * 185.13029 * 19 18 17 22 22 N 1.31561 * 119.99987 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00259 * 0.02562 * 21 19 18 24 24 H 1.48505 * 109.47112 * 89.99626 * 23 21 19 25 25 H 1.48496 * 109.47108 * 209.99687 * 23 21 19 26 26 H 1.48504 * 109.46724 * 329.99757 * 23 21 19 27 27 C 1.38699 * 120.03916 * 146.56211 * 13 12 10 28 28 H 1.08999 * 109.46876 * 59.99809 * 1 2 3 29 29 H 1.08997 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46864 * 299.99976 * 1 2 3 31 31 H 1.08998 * 109.47479 * 239.99601 * 2 1 3 32 32 H 1.09004 * 109.47017 * 119.99471 * 2 1 3 33 33 H 1.08997 * 109.47138 * 65.53606 * 3 2 1 34 34 H 1.09000 * 109.47578 * 305.53223 * 3 2 1 35 35 H 1.08998 * 109.46989 * 61.58073 * 5 4 3 36 36 H 1.08996 * 109.47158 * 181.58199 * 5 4 3 37 37 H 1.09003 * 109.46906 * 184.87372 * 6 5 4 38 38 H 1.09001 * 109.46595 * 304.86650 * 6 5 4 39 39 H 1.08993 * 109.46975 * 64.87191 * 6 5 4 40 40 H 1.08999 * 109.46663 * 69.99770 * 7 4 3 41 41 H 1.09003 * 109.47098 * 310.00618 * 7 4 3 42 42 H 1.09000 * 109.46816 * 60.00028 * 8 7 4 43 43 H 1.09000 * 109.46949 * 300.00677 * 8 7 4 44 44 H 0.96996 * 119.99956 * 0.02562 * 9 8 7 45 45 H 0.96998 * 120.00065 * 354.81988 * 12 10 9 46 46 H 1.07998 * 119.96183 * 0.02562 * 14 13 12 47 47 H 1.08003 * 119.93239 * 179.97438 * 15 14 13 48 48 H 1.08007 * 119.96329 * 180.27821 * 16 15 14 49 49 H 0.97000 * 120.00123 * 180.02562 * 22 21 19 50 50 H 1.08012 * 120.06588 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5030 1.4447 -0.1335 5 6 4.1377 0.7904 1.0185 6 6 3.7292 1.5126 2.3041 7 6 4.0135 2.8107 -0.3104 8 6 5.4939 2.7564 -0.6927 9 7 6.0029 4.1187 -0.8697 10 6 7.2917 4.3177 -1.2101 11 8 8.0318 3.3665 -1.3708 12 7 7.7600 5.5709 -1.3724 13 6 9.1212 5.7828 -1.6191 14 6 10.0701 4.9410 -1.0518 15 6 11.4140 5.1498 -1.2944 16 6 11.8187 6.1923 -2.1060 17 6 10.8753 7.0408 -2.6713 18 8 11.2739 8.0682 -3.4641 19 6 10.3064 8.7789 -4.0778 20 1 9.2678 8.5744 -3.8635 21 6 10.6448 9.7723 -4.9838 22 7 9.7007 10.4661 -5.5823 23 14 12.4412 10.1257 -5.3548 24 1 12.8870 9.2816 -6.4924 25 1 12.6007 11.5588 -5.7094 26 1 13.2637 9.8174 -4.1575 27 6 9.5246 6.8335 -2.4296 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7599 1.9269 0.9354 34 1 1.5981 1.9842 -0.8363 35 1 3.8161 -0.2498 1.0682 36 1 5.2213 0.8308 0.9077 37 1 4.2670 1.0825 3.1490 38 1 3.9731 2.5715 2.2191 39 1 2.6565 1.3981 2.4598 40 1 3.8989 3.3648 0.6213 41 1 3.4521 3.3089 -1.1008 42 1 5.6084 2.2022 -1.6243 43 1 6.0553 2.2581 0.0977 44 1 5.4125 4.8775 -0.7411 45 1 7.1537 6.3261 -1.3184 46 1 9.7567 4.1226 -0.4206 47 1 12.1497 4.4944 -0.8521 48 1 12.8698 6.3503 -2.2974 49 1 9.9374 11.1609 -6.2165 50 1 8.7889 7.4892 -2.8718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266958340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:40 Heat of formation + Delta-G solvation = -46.114708 kcal Electronic energy + Delta-G solvation = -27980.454860 eV Core-core repulsion = 24007.834536 eV Total energy + Delta-G solvation = -3972.620323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73975 -40.60670 -39.68098 -38.34316 -36.10638 -35.66319 -34.40049 -34.18771 -31.67651 -31.00443 -30.41477 -29.14645 -27.17966 -26.13908 -25.09325 -23.62411 -23.39931 -22.28983 -21.82322 -20.71844 -20.08029 -19.39406 -19.16845 -17.60146 -17.37882 -17.07506 -16.90208 -16.49087 -16.35296 -15.84190 -15.74863 -15.61167 -15.46028 -15.25340 -14.88070 -14.67783 -14.52753 -14.21432 -14.15243 -13.94032 -13.67768 -13.31101 -13.05636 -12.92227 -12.83022 -12.73078 -12.69617 -12.51251 -12.43313 -12.11779 -12.06787 -11.81493 -11.76013 -11.53864 -11.37665 -11.32037 -11.15906 -10.81697 -10.18771 -9.36419 -9.25950 -8.88269 -8.48223 -6.20762 0.43691 0.67250 1.33852 1.37953 1.46974 1.54649 2.02244 2.30230 2.80564 2.82944 3.04623 3.19407 3.31330 3.78699 3.98215 4.00115 4.12049 4.16807 4.28643 4.31730 4.32671 4.40558 4.43925 4.49531 4.58136 4.61154 4.65649 4.70139 4.74441 4.81957 4.87134 4.93503 4.94995 5.05059 5.08431 5.21231 5.30154 5.31948 5.34784 5.35974 5.38250 5.46787 5.50691 5.66166 5.76862 5.88542 5.98136 6.07810 6.12075 6.24242 6.86393 6.90936 7.41590 7.59865 8.62951 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.001821 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.143772 B =15374.848419 C =16349.610439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.054 3.946 4 N -0.544 5.544 5 C 0.040 3.960 6 C -0.188 4.188 7 C 0.049 3.951 8 C 0.147 3.853 9 N -0.725 5.725 10 C 0.703 3.297 11 O -0.609 6.609 12 N -0.675 5.675 13 C 0.202 3.798 14 C -0.193 4.193 15 C -0.052 4.052 16 C -0.204 4.204 17 C 0.141 3.859 18 O -0.240 6.240 19 C -0.398 4.398 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.968 3.032 24 H -0.268 1.268 25 H -0.268 1.268 26 H -0.261 1.261 27 C -0.256 4.256 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.413 0.587 45 H 0.419 0.581 46 H 0.130 0.870 47 H 0.159 0.841 48 H 0.134 0.866 49 H 0.284 0.716 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 -17.842 16.026 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.074 4.074 4 N -0.268 5.268 5 C -0.087 4.087 6 C -0.246 4.246 7 C -0.079 4.079 8 C 0.022 3.978 9 N -0.382 5.382 10 C 0.403 3.597 11 O -0.488 6.488 12 N -0.323 5.323 13 C 0.106 3.894 14 C -0.213 4.213 15 C -0.070 4.070 16 C -0.223 4.223 17 C 0.092 3.908 18 O -0.148 6.148 19 C -0.474 4.474 20 H 0.101 0.899 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.790 3.210 24 H -0.194 1.194 25 H -0.193 1.193 26 H -0.185 1.185 27 C -0.278 4.278 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.250 0.750 45 H 0.256 0.744 46 H 0.148 0.852 47 H 0.177 0.823 48 H 0.152 0.848 49 H 0.094 0.906 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.631 -18.769 15.292 28.818 hybrid contribution -0.502 1.675 0.194 1.759 sum -16.134 -17.094 15.486 28.148 Atomic orbital electron populations 1.21717 0.94846 1.02135 1.02001 1.21500 0.96033 0.95857 1.02268 1.22224 0.86116 0.97990 1.01049 1.62110 1.06344 1.17130 1.41198 1.22292 0.99513 0.99124 0.87807 1.22359 1.02207 1.01119 0.98960 1.22164 0.93293 0.90695 1.01739 1.21107 0.94179 0.81173 1.01319 1.44817 1.08693 1.10437 1.74204 1.15973 0.83038 0.82694 0.77979 1.90923 1.57904 1.41459 1.58526 1.42464 1.07617 1.07949 1.74308 1.17223 0.82881 0.94990 0.94270 1.20932 0.92534 1.02425 1.05457 1.20971 0.95558 0.95345 0.95151 1.20533 0.98969 0.97915 1.04908 1.19315 0.92920 0.87654 0.90951 1.83549 1.35672 1.39437 1.56100 1.20696 0.88172 1.15733 1.22814 0.89890 1.25244 1.03838 0.94965 0.94684 1.69721 1.34636 1.23326 1.28543 0.85251 0.78533 0.77852 0.79320 1.19361 1.19272 1.18510 1.20854 0.96280 1.04240 1.06457 0.92600 0.92206 0.92455 0.92019 0.91868 0.93704 0.90662 0.89814 0.91151 0.91566 0.92728 0.91907 0.92462 0.89258 0.92540 0.92084 0.75013 0.74393 0.85237 0.82326 0.84766 0.90634 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.48 16 2 C -0.12 -1.17 5.63 30.59 0.17 -1.00 16 3 C 0.05 0.56 4.63 86.30 0.40 0.96 16 4 N -0.54 -7.12 4.73 -896.21 -4.24 -11.37 16 5 C 0.04 0.49 5.57 86.31 0.48 0.97 16 6 C -0.19 -1.91 9.18 71.98 0.66 -1.24 16 7 C 0.05 0.62 4.91 86.30 0.42 1.04 16 8 C 0.15 2.70 5.61 86.38 0.48 3.18 16 9 N -0.72 -14.19 5.56 -478.55 -2.66 -16.85 16 10 C 0.70 20.69 8.30 179.06 1.49 22.18 16 11 O -0.61 -22.88 14.03 -4.00 -0.06 -22.94 16 12 N -0.68 -20.09 5.35 -317.23 -1.70 -21.78 16 13 C 0.20 7.60 6.27 38.13 0.24 7.84 16 14 C -0.19 -6.94 8.65 22.42 0.19 -6.75 16 15 C -0.05 -1.74 10.03 22.23 0.22 -1.52 16 16 C -0.20 -7.97 9.99 22.41 0.22 -7.75 16 17 C 0.14 6.66 6.64 22.56 0.15 6.81 16 18 O -0.24 -12.96 8.58 -22.73 -0.20 -13.15 16 19 C -0.40 -23.11 9.95 67.92 0.68 -22.43 16 20 H 0.08 5.00 5.43 -2.91 -0.02 4.98 16 21 C 0.01 0.64 5.49 84.83 0.47 1.11 16 22 N -0.92 -54.33 13.96 21.61 0.30 -54.02 16 23 Si 0.97 45.15 28.62 68.60 1.96 47.11 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 27 C -0.26 -11.29 9.08 22.51 0.20 -11.08 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.60 6.80 -2.38 -0.02 0.58 16 33 H 0.04 0.43 6.20 -2.39 -0.01 0.41 16 34 H 0.07 0.78 7.99 -2.39 -0.02 0.76 16 35 H 0.08 0.94 6.59 -2.39 -0.02 0.93 16 36 H 0.07 1.00 6.24 -2.39 -0.01 0.99 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.05 0.60 6.21 -2.39 -0.01 0.58 16 39 H 0.06 0.58 6.58 -2.39 -0.02 0.56 16 40 H 0.06 0.60 6.11 -2.39 -0.01 0.59 16 41 H 0.09 1.00 7.97 -2.39 -0.02 0.98 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.23 6.44 -2.39 -0.02 1.22 16 44 H 0.41 5.29 8.49 -92.71 -0.79 4.50 16 45 H 0.42 9.76 8.83 -92.71 -0.82 8.94 16 46 H 0.13 4.57 6.41 -2.91 -0.02 4.55 16 47 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 48 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 49 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 50 H 0.12 5.59 5.64 -2.90 -0.02 5.58 16 Total: -1.00 -71.60 397.24 -0.02 -71.62 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.63 Total: 29.55 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 7.20 Total: -8.16 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -8.30 Total: -104.02 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.25 Total: -36.09 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.96 Total: 47.11 kcal Total: -71.60 -0.02 -71.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266958340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.502 kcal (2) G-P(sol) polarization free energy of solvation -71.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds