Wall clock time and date at job start Tue Mar 31 2020 18:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.47317 * 55.00458 * 3 2 1 5 5 C 1.50710 * 109.46737 * 174.99856 * 3 2 1 6 6 H 1.08000 * 119.99588 * 120.00132 * 5 3 2 7 7 C 1.37869 * 119.99939 * 300.00043 * 5 3 2 8 8 N 1.31518 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47156 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46915 * 120.00024 * 9 7 5 12 12 H 1.48491 * 109.47319 * 240.00168 * 9 7 5 13 13 N 1.46492 * 109.47631 * 294.99736 * 3 2 1 14 14 C 1.34780 * 119.99694 * 84.99889 * 13 3 2 15 15 O 1.21273 * 120.00445 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99734 * 180.02562 * 14 13 3 17 17 H 1.08996 * 110.43837 * 302.54785 * 16 14 13 18 18 C 1.54812 * 110.48729 * 65.23844 * 16 14 13 19 19 C 1.55000 * 102.09551 * 97.79502 * 18 16 14 20 20 O 1.44379 * 103.48724 * 37.02203 * 19 18 16 21 21 C 1.43749 * 106.97879 * 319.94022 * 20 19 18 22 22 H 1.08998 * 110.00108 * 267.02282 * 21 20 19 23 23 C 1.50696 * 109.87885 * 145.93948 * 21 20 19 24 24 C 1.35326 * 126.12755 * 326.86053 * 23 21 20 25 25 C 1.39872 * 107.91791 * 179.90882 * 24 23 21 26 26 N 1.30831 * 108.20453 * 0.35645 * 25 24 23 27 27 N 1.34946 * 126.13127 * 147.16977 * 23 21 20 28 28 C 1.46504 * 126.03264 * 359.97438 * 27 23 21 29 29 C 1.52997 * 109.47152 * 119.99803 * 28 27 23 30 30 C 1.52995 * 109.46921 * 240.00026 * 28 27 23 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 33 33 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 34 34 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 35 35 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 36 36 H 0.96995 * 120.00483 * 179.97438 * 8 7 5 37 37 H 0.96998 * 120.00524 * 265.00950 * 13 3 2 38 38 H 1.09003 * 110.90616 * 215.99342 * 18 16 14 39 39 H 1.09000 * 110.90808 * 339.59543 * 18 16 14 40 40 H 1.09004 * 110.61512 * 278.52589 * 19 18 16 41 41 H 1.08996 * 110.75134 * 155.58618 * 19 18 16 42 42 H 1.08000 * 126.03542 * 0.02714 * 24 23 21 43 43 H 1.08002 * 125.89227 * 180.14408 * 25 24 23 44 44 H 1.09003 * 109.47116 * 359.97438 * 28 27 23 45 45 H 1.09003 * 109.47186 * 59.99949 * 29 28 27 46 46 H 1.09006 * 109.46899 * 180.02562 * 29 28 27 47 47 H 1.09003 * 109.47347 * 299.99609 * 29 28 27 48 48 H 1.08989 * 109.47646 * 60.00080 * 30 28 27 49 49 H 1.09005 * 109.47262 * 180.02562 * 30 28 27 50 50 H 1.09003 * 109.46967 * 299.99775 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5988 1.5454 0.1937 11 1 6.3999 1.6158 2.6093 12 1 6.4962 -0.5188 1.4627 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3394 2.6326 -0.4342 16 6 0.0362 3.3377 -2.6547 17 1 0.7439 4.1275 -2.9064 18 6 -0.0550 2.3021 -3.8019 19 6 -1.5747 2.0006 -3.8473 20 8 -2.1805 3.2818 -3.5717 21 6 -1.3915 3.9074 -2.5459 22 1 -1.8076 3.6796 -1.5645 23 6 -1.3655 5.3992 -2.7575 24 6 -1.3924 6.0363 -3.9511 25 6 -1.3553 7.4127 -3.7052 26 7 -1.3000 7.5953 -2.4109 27 7 -1.3052 6.3391 -1.7910 28 6 -1.2539 6.0896 -0.3483 29 6 0.0333 6.6839 0.2266 30 6 -2.4625 6.7425 0.3253 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.8293 -0.0618 2.9495 37 1 2.2719 2.1232 -1.9977 38 1 0.2842 2.7340 -4.7436 39 1 0.5129 1.4035 -3.5608 40 1 -1.8451 1.2752 -3.0799 41 1 -1.8679 1.6416 -4.8337 42 1 -1.4369 5.5651 -4.9219 43 1 -1.3665 8.1904 -4.4546 44 1 -1.2723 5.0153 -0.1645 45 1 0.0513 7.7582 0.0428 46 1 0.0716 6.4979 1.3000 47 1 0.8944 6.2187 -0.2533 48 1 -3.3795 6.3191 -0.0842 49 1 -2.4242 6.5573 1.3989 50 1 -2.4446 7.8167 0.1415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277236825.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:25 Heat of formation + Delta-G solvation = -15.471729 kcal Electronic energy + Delta-G solvation = -31090.495348 eV Core-core repulsion = 27119.203804 eV Total energy + Delta-G solvation = -3971.291544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.45798 -40.01737 -38.19343 -35.58424 -35.17081 -32.87962 -32.19450 -31.60000 -30.77388 -29.69927 -28.04306 -27.27777 -27.03783 -23.92637 -22.97383 -22.89769 -22.36745 -20.54913 -20.11763 -19.39450 -19.25672 -17.75193 -17.10422 -16.08500 -15.75994 -15.69000 -15.08073 -14.97814 -14.95094 -14.65144 -14.39950 -14.18676 -14.01661 -13.35609 -13.21543 -13.00108 -12.84910 -12.78846 -12.46642 -12.23166 -12.07738 -11.88157 -11.67904 -11.59112 -11.37839 -11.33384 -11.30398 -11.21827 -11.06068 -11.01607 -10.91415 -10.51235 -10.38887 -10.27782 -9.85870 -9.70385 -9.30115 -9.13824 -9.03691 -8.59157 -8.40993 -7.97203 -6.20774 -4.30503 1.88881 2.48099 2.90045 3.14361 3.17946 3.26518 3.28483 3.70677 3.96927 4.28897 4.37099 4.49488 4.58705 4.87201 4.89161 4.92809 4.98561 5.10987 5.15854 5.21548 5.30967 5.43978 5.52319 5.56300 5.62524 5.63225 5.71237 5.73645 5.78789 5.84967 5.89261 5.92349 6.11051 6.17478 6.26253 6.29329 6.35015 6.55293 6.73156 6.76781 6.92841 7.08556 7.10143 7.24682 7.31610 7.51674 7.62376 7.79587 7.81395 8.08422 8.51601 8.66690 8.95864 9.37203 10.84403 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.003760 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.293664 B = 7445.276023 C = 8330.636176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.701 5.701 14 C 0.511 3.489 15 O -0.546 6.546 16 C -0.140 4.140 17 H 0.107 0.893 18 C -0.143 4.143 19 C 0.047 3.953 20 O -0.360 6.360 21 C 0.152 3.848 22 H 0.106 0.894 23 C 0.085 3.915 24 C -0.254 4.254 25 C 0.035 3.965 26 N -0.291 5.291 27 N -0.350 5.350 28 C 0.145 3.855 29 C -0.156 4.156 30 C -0.158 4.158 31 H 0.023 0.977 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.100 0.900 35 H 0.031 0.969 36 H 0.264 0.736 37 H 0.389 0.611 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.145 0.855 43 H 0.180 0.820 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 7.188 -10.758 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.348 5.348 14 C 0.295 3.705 15 O -0.426 6.426 16 C -0.163 4.163 17 H 0.125 0.875 18 C -0.181 4.181 19 C -0.029 4.029 20 O -0.278 6.278 21 C 0.092 3.908 22 H 0.123 0.877 23 C -0.044 4.044 24 C -0.284 4.284 25 C -0.150 4.150 26 N -0.113 5.113 27 N -0.134 5.134 28 C 0.044 3.956 29 C -0.214 4.214 30 C -0.215 4.215 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.221 0.779 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.163 0.837 43 H 0.197 0.803 44 H 0.132 0.868 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.095 0.905 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.008 7.976 -8.870 14.948 hybrid contribution 1.547 -0.726 -0.897 1.930 sum -7.461 7.250 -9.768 14.270 Atomic orbital electron populations 1.21839 0.98333 0.98103 1.01137 1.21939 0.92586 0.99748 1.02371 1.18820 0.94296 0.89185 0.80771 0.93247 1.21251 0.90656 1.39133 1.06347 0.92076 1.24866 0.98595 0.94718 0.95353 1.69892 1.35081 1.37511 1.09353 0.86423 0.84864 0.77838 0.78171 1.19745 1.20851 1.20820 1.46482 1.14239 1.55390 1.18660 1.19918 0.83042 0.79327 0.88259 1.90633 1.51350 1.60301 1.40323 1.22714 0.98088 0.99556 0.95929 0.87451 1.23145 0.97901 0.99097 0.97948 1.23609 0.91245 0.86198 1.01851 1.88881 1.50640 1.31044 1.57187 1.20977 0.90181 0.85656 0.93965 0.87692 1.20779 1.02219 0.91793 0.89565 1.21157 1.16314 0.93001 0.97893 1.23787 1.00904 0.96713 0.93561 1.77272 1.24208 1.01861 1.07944 1.48806 1.55711 1.02938 1.05991 1.21530 0.97204 1.02297 0.74537 1.22072 0.95967 1.01745 1.01617 1.22102 0.96758 1.01827 1.00853 0.95813 0.93128 0.94391 0.88222 0.95034 0.92561 0.77854 0.89421 0.89083 0.91512 0.88368 0.83673 0.80313 0.86802 0.91488 0.90471 0.92007 0.92220 0.90548 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.52 37.16 0.32 -2.51 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.04 16 3 C 0.27 6.32 2.24 -69.08 -0.15 6.16 16 4 H 0.05 1.35 7.58 -51.93 -0.39 0.95 16 5 C -0.54 -13.41 8.73 -34.44 -0.30 -13.71 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.69 11.29 55.43 0.63 -23.07 16 9 Si 0.90 19.95 29.54 -169.99 -5.02 14.92 16 10 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.70 -13.12 4.87 -54.93 -0.27 -13.39 16 14 C 0.51 8.93 5.62 -10.98 -0.06 8.86 16 15 O -0.55 -11.05 11.78 5.56 0.07 -10.99 16 16 C -0.14 -1.94 3.06 -90.24 -0.28 -2.21 16 17 H 0.11 1.44 7.69 -51.93 -0.40 1.04 16 18 C -0.14 -1.59 6.70 -24.72 -0.17 -1.75 16 19 C 0.05 0.54 7.72 38.21 0.29 0.84 16 20 O -0.36 -5.01 10.87 -35.23 -0.38 -5.39 16 21 C 0.15 2.21 3.16 -27.31 -0.09 2.12 16 22 H 0.11 1.73 5.24 -51.93 -0.27 1.45 16 23 C 0.08 1.23 5.79 -82.26 -0.48 0.76 16 24 C -0.25 -3.38 10.36 -40.01 -0.41 -3.79 16 25 C 0.04 0.45 12.03 -17.37 -0.21 0.24 16 26 N -0.29 -4.30 12.43 30.62 0.38 -3.92 16 27 N -0.35 -5.17 3.28 -50.69 -0.17 -5.34 16 28 C 0.15 2.01 3.64 -67.93 -0.25 1.76 16 29 C -0.16 -2.08 9.45 37.16 0.35 -1.73 16 30 C -0.16 -1.86 9.45 37.16 0.35 -1.51 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 33 H 0.04 0.74 5.65 -51.93 -0.29 0.45 16 34 H 0.10 2.55 5.95 -51.93 -0.31 2.24 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.39 6.42 8.54 -40.82 -0.35 6.07 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.02 7.74 -51.93 -0.40 0.61 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.18 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.73 5.97 -51.93 -0.31 1.42 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 396.51 15.07 5.98 5.98 Total: -1.00 -29.15 396.51 -8.28 -37.43 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -8.17 Total: 11.62 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.32 Total: -7.86 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.57 Total: -45.71 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.32 Total: -16.38 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.15 -8.28 -37.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277236825.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.961 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds