Wall clock time and date at job start Tue Mar 31 2020 18:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.47317 * 55.00458 * 3 2 1 5 5 C 1.50710 * 109.46737 * 174.99856 * 3 2 1 6 6 H 1.08000 * 119.99588 * 120.00132 * 5 3 2 7 7 C 1.37869 * 119.99939 * 300.00043 * 5 3 2 8 8 N 1.31518 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47156 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46915 * 120.00024 * 9 7 5 12 12 H 1.48491 * 109.47319 * 240.00168 * 9 7 5 13 13 N 1.46492 * 109.47631 * 294.99736 * 3 2 1 14 14 C 1.34780 * 119.99694 * 84.99889 * 13 3 2 15 15 O 1.21273 * 120.00445 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99734 * 180.02562 * 14 13 3 17 17 H 1.08996 * 110.43837 * 302.54785 * 16 14 13 18 18 C 1.54812 * 110.48729 * 65.23844 * 16 14 13 19 19 C 1.55000 * 102.09551 * 97.79502 * 18 16 14 20 20 O 1.44379 * 103.48724 * 37.02203 * 19 18 16 21 21 C 1.43749 * 106.97879 * 319.94022 * 20 19 18 22 22 H 1.08998 * 110.00108 * 267.02282 * 21 20 19 23 23 C 1.50696 * 109.87885 * 145.93948 * 21 20 19 24 24 C 1.35326 * 126.12755 * 326.86053 * 23 21 20 25 25 C 1.39872 * 107.91791 * 179.90882 * 24 23 21 26 26 N 1.30831 * 108.20453 * 0.35645 * 25 24 23 27 27 N 1.34946 * 126.13127 * 147.16977 * 23 21 20 28 28 C 1.46504 * 126.03264 * 359.97438 * 27 23 21 29 29 C 1.52997 * 109.47152 * 119.99803 * 28 27 23 30 30 C 1.52995 * 109.46921 * 240.00026 * 28 27 23 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 33 33 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 34 34 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 35 35 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 36 36 H 0.96995 * 120.00483 * 179.97438 * 8 7 5 37 37 H 0.96998 * 120.00524 * 265.00950 * 13 3 2 38 38 H 1.09003 * 110.90616 * 215.99342 * 18 16 14 39 39 H 1.09000 * 110.90808 * 339.59543 * 18 16 14 40 40 H 1.09004 * 110.61512 * 278.52589 * 19 18 16 41 41 H 1.08996 * 110.75134 * 155.58618 * 19 18 16 42 42 H 1.08000 * 126.03542 * 0.02714 * 24 23 21 43 43 H 1.08002 * 125.89227 * 180.14408 * 25 24 23 44 44 H 1.09003 * 109.47116 * 359.97438 * 28 27 23 45 45 H 1.09003 * 109.47186 * 59.99949 * 29 28 27 46 46 H 1.09006 * 109.46899 * 180.02562 * 29 28 27 47 47 H 1.09003 * 109.47347 * 299.99609 * 29 28 27 48 48 H 1.08989 * 109.47646 * 60.00080 * 30 28 27 49 49 H 1.09005 * 109.47262 * 180.02562 * 30 28 27 50 50 H 1.09003 * 109.46967 * 299.99775 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5988 1.5454 0.1937 11 1 6.3999 1.6158 2.6093 12 1 6.4962 -0.5188 1.4627 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3394 2.6326 -0.4342 16 6 0.0362 3.3377 -2.6547 17 1 0.7439 4.1275 -2.9064 18 6 -0.0550 2.3021 -3.8019 19 6 -1.5747 2.0006 -3.8473 20 8 -2.1805 3.2818 -3.5717 21 6 -1.3915 3.9074 -2.5459 22 1 -1.8076 3.6796 -1.5645 23 6 -1.3655 5.3992 -2.7575 24 6 -1.3924 6.0363 -3.9511 25 6 -1.3553 7.4127 -3.7052 26 7 -1.3000 7.5953 -2.4109 27 7 -1.3052 6.3391 -1.7910 28 6 -1.2539 6.0896 -0.3483 29 6 0.0333 6.6839 0.2266 30 6 -2.4625 6.7425 0.3253 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 3.8293 -0.0618 2.9495 37 1 2.2719 2.1232 -1.9977 38 1 0.2842 2.7340 -4.7436 39 1 0.5129 1.4035 -3.5608 40 1 -1.8451 1.2752 -3.0799 41 1 -1.8679 1.6416 -4.8337 42 1 -1.4369 5.5651 -4.9219 43 1 -1.3665 8.1904 -4.4546 44 1 -1.2723 5.0153 -0.1645 45 1 0.0513 7.7582 0.0428 46 1 0.0716 6.4979 1.3000 47 1 0.8944 6.2187 -0.2533 48 1 -3.3795 6.3191 -0.0842 49 1 -2.4242 6.5573 1.3989 50 1 -2.4446 7.8167 0.1415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277236825.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:25 Heat of formation + Delta-G solvation = -33.090593 kcal Electronic energy + Delta-G solvation = -31091.259359 eV Core-core repulsion = 27119.203804 eV Total energy + Delta-G solvation = -3972.055555 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.53302 -41.27465 -39.50151 -36.94733 -36.60018 -34.44638 -33.67036 -32.76382 -32.29309 -30.73754 -29.21261 -28.76894 -28.31671 -25.44125 -24.45675 -23.93009 -23.48113 -21.88663 -21.44104 -20.97763 -20.34416 -19.14390 -18.38814 -17.60757 -17.29025 -16.82226 -16.64471 -16.17113 -16.02616 -15.93770 -15.73544 -15.53328 -15.03066 -14.68336 -14.59969 -14.34267 -14.14636 -13.97088 -13.77450 -13.47619 -13.22950 -13.21130 -13.10217 -13.00524 -12.81582 -12.77632 -12.70176 -12.44626 -12.31614 -12.26385 -12.17942 -12.09324 -12.00948 -11.60051 -11.53878 -11.04050 -10.92983 -10.64923 -10.51815 -10.22048 -9.65301 -9.46559 -8.16885 -6.33469 0.82209 1.42292 1.43366 1.45057 1.55130 1.74383 1.90979 2.31103 2.51331 2.85348 3.13154 3.31495 3.40131 3.50994 3.75389 3.86872 3.93684 3.98574 4.10090 4.12370 4.21492 4.32986 4.51098 4.52579 4.56556 4.58811 4.59861 4.67908 4.68830 4.77036 4.79789 4.83239 4.87613 4.89797 4.99563 5.07824 5.08915 5.10800 5.24762 5.27637 5.44490 5.56585 5.61179 5.70804 5.80466 5.81169 5.91528 6.03267 6.17863 6.74569 6.78198 6.93557 7.32760 7.52152 8.88134 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.003760 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.293664 B = 7445.276023 C = 8330.636176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.281 3.719 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.069 0.931 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.964 3.036 10 H -0.262 1.262 11 H -0.286 1.286 12 H -0.279 1.279 13 N -0.699 5.699 14 C 0.510 3.490 15 O -0.576 6.576 16 C -0.129 4.129 17 H 0.116 0.884 18 C -0.134 4.134 19 C 0.043 3.957 20 O -0.367 6.367 21 C 0.159 3.841 22 H 0.078 0.922 23 C 0.065 3.935 24 C -0.251 4.251 25 C 0.040 3.960 26 N -0.315 5.315 27 N -0.361 5.361 28 C 0.143 3.857 29 C -0.149 4.149 30 C -0.149 4.149 31 H 0.043 0.957 32 H 0.025 0.975 33 H 0.047 0.953 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.403 0.597 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.132 0.868 42 H 0.164 0.836 43 H 0.216 0.784 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.041 0.959 48 H 0.054 0.946 49 H 0.091 0.909 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 7.694 -13.483 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.789 3.211 10 H -0.186 1.186 11 H -0.212 1.212 12 H -0.205 1.205 13 N -0.347 5.347 14 C 0.297 3.703 15 O -0.457 6.457 16 C -0.152 4.152 17 H 0.134 0.866 18 C -0.172 4.172 19 C -0.033 4.033 20 O -0.286 6.286 21 C 0.099 3.901 22 H 0.096 0.904 23 C -0.062 4.062 24 C -0.280 4.280 25 C -0.145 4.145 26 N -0.136 5.136 27 N -0.145 5.145 28 C 0.041 3.959 29 C -0.206 4.206 30 C -0.207 4.207 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.237 0.763 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.071 0.929 41 H 0.150 0.850 42 H 0.182 0.818 43 H 0.232 0.768 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.060 0.940 48 H 0.073 0.927 49 H 0.109 0.891 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.555 8.486 -11.632 16.748 hybrid contribution 1.337 -0.863 -0.064 1.593 sum -7.218 7.623 -11.696 15.716 Atomic orbital electron populations 1.21674 0.96852 0.99104 1.00350 1.21775 0.93797 0.99054 1.01310 1.18358 0.93419 0.89208 0.81233 0.98141 1.21593 0.91600 1.38736 1.06533 0.91284 1.25672 1.02808 0.94470 0.95127 1.70038 1.36800 1.38372 1.09869 0.85424 0.79768 0.77796 0.78117 1.18616 1.21203 1.20495 1.46208 1.15175 1.55666 1.17630 1.20530 0.82039 0.78497 0.89278 1.90633 1.52117 1.61092 1.41867 1.22615 0.97814 1.00167 0.94556 0.86648 1.23212 0.97789 0.98342 0.97854 1.23819 0.91359 0.84932 1.03201 1.88877 1.51038 1.32020 1.56624 1.20737 0.90240 0.86088 0.93078 0.90416 1.20949 1.03240 0.91754 0.90287 1.21438 1.15296 0.93250 0.98066 1.24412 0.99161 0.97490 0.93449 1.77247 1.25275 1.02010 1.09115 1.48883 1.56340 1.03170 1.06127 1.21499 0.98131 1.01275 0.74951 1.22004 0.95035 1.01706 1.01889 1.22042 0.95586 1.01517 1.01558 0.93798 0.95595 0.93439 0.91200 0.93960 0.92667 0.76270 0.86356 0.88857 0.92889 0.85011 0.81826 0.76803 0.88849 0.90987 0.89669 0.93953 0.92676 0.89058 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.52 71.98 0.61 -4.51 16 2 C -0.12 -5.57 5.45 30.60 0.17 -5.40 16 3 C 0.28 13.47 2.24 44.25 0.10 13.57 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 5 C -0.55 -27.57 8.73 25.60 0.22 -27.35 16 6 H 0.07 3.29 7.74 -2.91 -0.02 3.27 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -50.43 11.29 21.44 0.24 -50.19 16 9 Si 0.96 40.90 29.54 68.60 2.03 42.93 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 13 N -0.70 -26.20 4.87 -446.10 -2.17 -28.37 16 14 C 0.51 18.03 5.62 87.66 0.49 18.52 16 15 O -0.58 -24.31 11.78 -3.01 -0.04 -24.35 16 16 C -0.13 -3.43 3.06 -10.55 -0.03 -3.46 16 17 H 0.12 2.92 7.69 -2.39 -0.02 2.90 16 18 C -0.13 -2.60 6.70 31.90 0.21 -2.39 16 19 C 0.04 0.87 7.72 72.67 0.56 1.43 16 20 O -0.37 -9.64 10.87 -148.98 -1.62 -11.26 16 21 C 0.16 4.54 3.16 30.22 0.10 4.64 16 22 H 0.08 2.67 5.24 -2.39 -0.01 2.66 16 23 C 0.07 1.86 5.79 41.41 0.24 2.09 16 24 C -0.25 -6.09 10.36 21.99 0.23 -5.86 16 25 C 0.04 0.92 12.03 85.24 1.02 1.94 16 26 N -0.31 -8.94 12.43 -57.02 -0.71 -9.65 16 27 N -0.36 -10.60 3.28 -314.30 -1.03 -11.63 16 28 C 0.14 4.06 3.64 44.99 0.16 4.23 16 29 C -0.15 -4.06 9.45 71.98 0.68 -3.38 16 30 C -0.15 -3.56 9.45 71.98 0.68 -2.88 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 33 H 0.05 1.86 5.65 -2.39 -0.01 1.85 16 34 H 0.07 3.69 5.95 -2.39 -0.01 3.67 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.40 12.86 8.54 -92.71 -0.79 12.07 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 1.82 7.74 -2.39 -0.02 1.80 16 40 H 0.05 1.22 8.14 -2.38 -0.02 1.21 16 41 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.22 3.13 8.06 -2.91 -0.02 3.11 16 44 H 0.09 3.03 5.97 -2.39 -0.01 3.02 16 45 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 47 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -65.01 396.51 2.75 -62.26 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.15 Total: 37.60 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: 5.90 Total: -7.34 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -3.67 Total: -99.84 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.65 Total: -35.61 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -65.01 2.75 -62.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277236825.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.173 kcal (2) G-P(sol) polarization free energy of solvation -65.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds