Wall clock time and date at job start Tue Mar 31 2020 19:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47075 * 2 1 4 4 N 1.46504 * 109.46986 * 119.99646 * 2 1 3 5 5 N 1.40083 * 126.03812 * 300.02737 * 4 2 1 6 6 C 1.30844 * 108.20198 * 179.97438 * 5 4 2 7 7 C 1.39866 * 108.20609 * 359.97438 * 6 5 4 8 8 C 1.34951 * 126.03463 * 120.02799 * 4 2 1 9 9 C 1.50702 * 126.12865 * 359.95073 * 8 4 2 10 10 H 1.09004 * 109.86779 * 25.47786 * 9 8 4 11 11 O 1.43742 * 109.87995 * 146.48313 * 9 8 4 12 12 C 1.44376 * 106.97497 * 145.93903 * 11 9 8 13 13 C 1.54993 * 103.49333 * 319.94241 * 12 11 9 14 14 C 1.54093 * 109.88252 * 264.31871 * 9 8 4 15 15 H 1.09002 * 110.48881 * 357.21925 * 14 9 8 16 16 C 1.50702 * 110.49047 * 119.86779 * 14 9 8 17 17 O 1.21279 * 119.99971 * 359.97438 * 16 14 9 18 18 N 1.34777 * 120.00044 * 180.02562 * 16 14 9 19 19 C 1.46500 * 119.99926 * 179.97438 * 18 16 14 20 20 C 1.52998 * 109.46980 * 179.97438 * 19 18 16 21 21 C 1.53001 * 109.47121 * 180.02562 * 20 19 18 22 22 C 1.50699 * 109.47371 * 180.02562 * 21 20 19 23 23 H 1.08005 * 119.99888 * 0.02562 * 22 21 20 24 24 C 1.37872 * 119.99959 * 180.02562 * 22 21 20 25 25 N 1.31512 * 120.00344 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99831 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47215 * 90.00107 * 26 24 22 28 28 H 1.48504 * 109.46986 * 210.00069 * 26 24 22 29 29 H 1.48500 * 109.47198 * 329.99735 * 26 24 22 30 30 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47306 * 300.00199 * 1 2 3 32 32 H 1.09004 * 109.47154 * 60.00377 * 1 2 3 33 33 H 1.09002 * 109.47306 * 239.99801 * 2 1 3 34 34 H 1.09002 * 109.47388 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47205 * 299.99410 * 3 2 1 36 36 H 1.09002 * 109.47216 * 59.99746 * 3 2 1 37 37 H 1.08004 * 125.89480 * 180.02562 * 6 5 4 38 38 H 1.07992 * 126.04114 * 179.97438 * 7 6 5 39 39 H 1.08999 * 110.61629 * 78.44721 * 12 11 9 40 40 H 1.09003 * 110.61696 * 201.28497 * 12 11 9 41 41 H 1.08997 * 110.90814 * 155.22121 * 13 12 11 42 42 H 1.09006 * 110.90898 * 278.79246 * 13 12 11 43 43 H 0.97001 * 120.00106 * 0.02562 * 18 16 14 44 44 H 1.08993 * 109.47090 * 299.99838 * 19 18 16 45 45 H 1.09005 * 109.46901 * 59.99992 * 19 18 16 46 46 H 1.08993 * 109.47596 * 300.00164 * 20 19 18 47 47 H 1.09005 * 109.46791 * 60.00560 * 20 19 18 48 48 H 1.09001 * 109.47273 * 300.00553 * 21 20 19 49 49 H 1.08998 * 109.47144 * 59.99942 * 21 20 19 50 50 H 0.97006 * 120.00607 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.7585 -0.3241 2.5231 6 6 2.3623 -1.1786 3.3088 7 6 3.0244 -2.1155 2.5087 8 6 2.7978 -1.7920 1.2145 9 6 3.3199 -2.5311 0.0094 10 1 3.3804 -1.8541 -0.8428 11 8 4.6195 -3.0750 0.2948 12 6 4.7191 -4.3257 -0.4196 13 6 3.3136 -4.9552 -0.2445 14 6 2.3907 -3.7147 -0.3227 15 1 1.5893 -3.7885 0.4124 16 6 1.8230 -3.5663 -1.7108 17 8 2.1224 -2.6065 -2.3890 18 7 0.9817 -4.4997 -2.1981 19 6 0.4293 -4.3552 -3.5472 20 6 -0.4882 -5.5409 -3.8523 21 6 -1.0646 -5.3903 -5.2616 22 6 -1.9688 -6.5578 -5.5620 23 1 -2.1179 -7.3299 -4.8216 24 6 -2.6058 -6.6404 -6.7819 25 7 -2.4247 -5.7001 -7.6834 26 14 -3.7261 -8.0881 -7.1545 27 1 -5.1122 -7.7628 -6.7325 28 1 -3.7053 -8.3675 -8.6129 29 1 -3.2512 -9.2847 -6.4144 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.3507 -1.1636 4.3887 38 1 3.6138 -2.9489 2.8615 39 1 4.9322 -4.1495 -1.4740 40 1 5.4850 -4.9615 0.0245 41 1 3.0965 -5.6531 -1.0531 42 1 3.2251 -5.4459 0.7248 43 1 0.7413 -5.2668 -1.6552 44 1 -0.1412 -3.4285 -3.6089 45 1 1.2430 -4.3298 -4.2721 46 1 0.0826 -6.4673 -3.7908 47 1 -1.3019 -5.5666 -3.1275 48 1 -1.6354 -4.4637 -5.3237 49 1 -0.2507 -5.3648 -5.9862 50 1 -2.8726 -5.7584 -8.5419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277442303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:12 Heat of formation + Delta-G solvation = -24.490594 kcal Electronic energy + Delta-G solvation = -29499.842352 eV Core-core repulsion = 25528.159721 eV Total energy + Delta-G solvation = -3971.682631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72314 -40.40359 -38.57435 -35.82562 -35.56619 -33.54921 -32.79674 -31.92152 -31.08618 -29.93501 -28.37422 -27.50795 -26.87879 -24.24387 -23.15276 -23.09032 -22.42881 -20.84051 -20.70705 -19.89271 -19.51967 -17.92219 -17.19193 -16.49215 -16.13667 -16.04135 -15.45646 -15.20876 -15.13254 -15.03135 -14.78467 -14.49543 -14.35838 -14.00909 -13.70741 -13.54662 -13.23775 -13.07765 -12.45147 -12.39974 -12.33228 -12.22415 -12.17859 -11.90876 -11.81208 -11.63057 -11.59287 -11.50350 -11.39175 -10.96203 -10.83487 -10.74006 -10.65552 -10.18904 -9.97569 -9.96462 -9.51951 -9.37071 -9.19083 -8.97845 -8.64525 -8.43550 -6.08085 -4.11565 1.64617 2.24327 2.47472 2.68488 3.09553 3.26356 3.33135 3.35556 3.56276 4.01305 4.14601 4.29920 4.38702 4.46617 4.57415 4.68582 4.73688 4.80243 4.90026 4.92567 5.00527 5.24039 5.27900 5.33735 5.35815 5.39396 5.44333 5.46665 5.50328 5.53889 5.60274 5.63438 5.64904 5.66879 5.89742 5.92450 6.02099 6.03275 6.30213 6.44845 6.47795 6.55286 6.68901 6.86699 6.89497 7.47565 7.55560 7.59381 7.67180 7.89881 8.12107 8.30917 8.94983 9.53131 11.03145 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.002360 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.808110 B =11863.290770 C =12757.366173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 C -0.159 4.159 4 N -0.352 5.352 5 N -0.288 5.288 6 C 0.037 3.963 7 C -0.250 4.250 8 C 0.079 3.921 9 C 0.153 3.847 10 H 0.105 0.895 11 O -0.356 6.356 12 C 0.046 3.954 13 C -0.144 4.144 14 C -0.140 4.140 15 H 0.114 0.886 16 C 0.517 3.483 17 O -0.540 6.540 18 N -0.719 5.719 19 C 0.116 3.884 20 C -0.121 4.121 21 C 0.024 3.976 22 C -0.524 4.524 23 H 0.055 0.945 24 C 0.057 3.943 25 N -0.893 5.893 26 Si 0.893 3.107 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.182 0.818 38 H 0.147 0.853 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.400 0.600 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.019 0.981 49 H 0.019 0.981 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.682 6.736 20.260 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 C -0.216 4.216 4 N -0.136 5.136 5 N -0.109 5.109 6 C -0.148 4.148 7 C -0.279 4.279 8 C -0.049 4.049 9 C 0.093 3.907 10 H 0.122 0.878 11 O -0.274 6.274 12 C -0.030 4.030 13 C -0.182 4.182 14 C -0.162 4.162 15 H 0.132 0.868 16 C 0.302 3.698 17 O -0.418 6.418 18 N -0.369 5.369 19 C -0.007 4.007 20 C -0.159 4.159 21 C -0.013 4.013 22 C -0.562 4.562 23 H 0.074 0.926 24 C -0.144 4.144 25 N -0.532 5.532 26 Si 0.721 3.279 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.199 1.199 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.199 0.801 38 H 0.165 0.835 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.234 0.766 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.207 8.697 19.507 24.600 hybrid contribution -0.480 -2.044 -0.086 2.101 sum 11.727 6.653 19.421 23.642 Atomic orbital electron populations 1.22088 0.93027 1.03005 1.03389 1.21515 0.95918 0.94227 0.83885 1.22111 1.01718 0.94410 1.03409 1.48820 1.38604 1.20621 1.05573 1.77312 1.23927 1.23278 0.86425 1.23833 0.97195 0.93729 1.00057 1.21183 1.10285 1.05630 0.90835 1.20717 0.96913 0.90781 0.96495 1.20942 0.82783 0.93729 0.93234 0.87788 1.88921 1.31051 1.36587 1.70854 1.23639 0.97147 0.84713 0.97548 1.23180 0.94282 0.96265 1.04445 1.22698 1.00255 0.96728 0.96518 0.86779 1.20151 0.79049 0.82886 0.87748 1.90673 1.60047 1.31149 1.59974 1.46183 1.46858 1.25429 1.18416 1.21707 0.97394 1.00578 0.81000 1.21896 0.97200 0.95132 1.01674 1.19022 0.95845 0.97489 0.88960 1.21186 1.27392 1.07553 1.00073 0.92647 1.25025 0.96804 0.96256 0.96331 1.69958 1.43359 1.33394 1.06528 0.86582 0.81054 0.82785 0.77505 1.20625 1.21159 1.19877 0.92217 0.91221 0.90422 0.87131 0.92126 0.90472 0.91203 0.80137 0.83527 0.91459 0.87989 0.89062 0.88895 0.76612 0.91624 0.91550 0.92659 0.92698 0.96306 0.96270 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.45 37.16 0.35 -1.28 16 2 C 0.15 1.61 3.64 -67.93 -0.25 1.36 16 3 C -0.16 -1.51 9.45 37.16 0.35 -1.16 16 4 N -0.35 -4.28 3.28 -50.69 -0.17 -4.45 16 5 N -0.29 -3.61 12.43 30.63 0.38 -3.23 16 6 C 0.04 0.39 12.03 -17.36 -0.21 0.18 16 7 C -0.25 -2.71 10.36 -40.01 -0.41 -3.13 16 8 C 0.08 0.93 5.79 -82.26 -0.48 0.46 16 9 C 0.15 1.74 3.16 -27.31 -0.09 1.65 16 10 H 0.10 1.36 5.23 -51.93 -0.27 1.09 16 11 O -0.36 -3.97 10.88 -35.23 -0.38 -4.36 16 12 C 0.05 0.38 7.72 38.21 0.29 0.68 16 13 C -0.14 -1.08 6.70 -24.72 -0.17 -1.24 16 14 C -0.14 -1.38 3.06 -90.25 -0.28 -1.66 16 15 H 0.11 1.05 7.69 -51.93 -0.40 0.65 16 16 C 0.52 6.58 7.05 -10.98 -0.08 6.50 16 17 O -0.54 -8.63 14.69 5.56 0.08 -8.54 16 18 N -0.72 -8.96 5.41 -60.30 -0.33 -9.29 16 19 C 0.12 1.85 5.67 -4.04 -0.02 1.83 16 20 C -0.12 -2.21 5.27 -26.73 -0.14 -2.35 16 21 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 22 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 23 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 24 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 25 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 26 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.31 6.01 -51.93 -0.31 1.00 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.18 1.30 8.06 -52.48 -0.42 0.87 16 38 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.64 7.74 -51.93 -0.40 0.24 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.40 3.96 8.47 -40.82 -0.35 3.61 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 409.16 15.07 6.17 6.17 Total: -1.00 -32.64 409.16 -8.66 -41.30 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.46 Total: 2.66 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.67 Total: -10.73 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.62 Total: -42.53 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.30 Total: -12.90 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.64 -8.66 -41.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277442303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.805 kcal (2) G-P(sol) polarization free energy of solvation -32.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds