Wall clock time and date at job start Tue Mar 31 2020 19:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47075 * 2 1 4 4 N 1.46504 * 109.46986 * 119.99646 * 2 1 3 5 5 N 1.40083 * 126.03812 * 300.02737 * 4 2 1 6 6 C 1.30844 * 108.20198 * 179.97438 * 5 4 2 7 7 C 1.39866 * 108.20609 * 359.97438 * 6 5 4 8 8 C 1.34951 * 126.03463 * 120.02799 * 4 2 1 9 9 C 1.50702 * 126.12865 * 359.95073 * 8 4 2 10 10 H 1.09004 * 109.86779 * 25.47786 * 9 8 4 11 11 O 1.43742 * 109.87995 * 146.48313 * 9 8 4 12 12 C 1.44376 * 106.97497 * 145.93903 * 11 9 8 13 13 C 1.54993 * 103.49333 * 319.94241 * 12 11 9 14 14 C 1.54093 * 109.88252 * 264.31871 * 9 8 4 15 15 H 1.09002 * 110.48881 * 357.21925 * 14 9 8 16 16 C 1.50702 * 110.49047 * 119.86779 * 14 9 8 17 17 O 1.21279 * 119.99971 * 359.97438 * 16 14 9 18 18 N 1.34777 * 120.00044 * 180.02562 * 16 14 9 19 19 C 1.46500 * 119.99926 * 179.97438 * 18 16 14 20 20 C 1.52998 * 109.46980 * 179.97438 * 19 18 16 21 21 C 1.53001 * 109.47121 * 180.02562 * 20 19 18 22 22 C 1.50699 * 109.47371 * 180.02562 * 21 20 19 23 23 H 1.08005 * 119.99888 * 0.02562 * 22 21 20 24 24 C 1.37872 * 119.99959 * 180.02562 * 22 21 20 25 25 N 1.31512 * 120.00344 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99831 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47215 * 90.00107 * 26 24 22 28 28 H 1.48504 * 109.46986 * 210.00069 * 26 24 22 29 29 H 1.48500 * 109.47198 * 329.99735 * 26 24 22 30 30 H 1.08999 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47306 * 300.00199 * 1 2 3 32 32 H 1.09004 * 109.47154 * 60.00377 * 1 2 3 33 33 H 1.09002 * 109.47306 * 239.99801 * 2 1 3 34 34 H 1.09002 * 109.47388 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47205 * 299.99410 * 3 2 1 36 36 H 1.09002 * 109.47216 * 59.99746 * 3 2 1 37 37 H 1.08004 * 125.89480 * 180.02562 * 6 5 4 38 38 H 1.07992 * 126.04114 * 179.97438 * 7 6 5 39 39 H 1.08999 * 110.61629 * 78.44721 * 12 11 9 40 40 H 1.09003 * 110.61696 * 201.28497 * 12 11 9 41 41 H 1.08997 * 110.90814 * 155.22121 * 13 12 11 42 42 H 1.09006 * 110.90898 * 278.79246 * 13 12 11 43 43 H 0.97001 * 120.00106 * 0.02562 * 18 16 14 44 44 H 1.08993 * 109.47090 * 299.99838 * 19 18 16 45 45 H 1.09005 * 109.46901 * 59.99992 * 19 18 16 46 46 H 1.08993 * 109.47596 * 300.00164 * 20 19 18 47 47 H 1.09005 * 109.46791 * 60.00560 * 20 19 18 48 48 H 1.09001 * 109.47273 * 300.00553 * 21 20 19 49 49 H 1.08998 * 109.47144 * 59.99942 * 21 20 19 50 50 H 0.97006 * 120.00607 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 7 1.7585 -0.3241 2.5231 6 6 2.3623 -1.1786 3.3088 7 6 3.0244 -2.1155 2.5087 8 6 2.7978 -1.7920 1.2145 9 6 3.3199 -2.5311 0.0094 10 1 3.3804 -1.8541 -0.8428 11 8 4.6195 -3.0750 0.2948 12 6 4.7191 -4.3257 -0.4196 13 6 3.3136 -4.9552 -0.2445 14 6 2.3907 -3.7147 -0.3227 15 1 1.5893 -3.7885 0.4124 16 6 1.8230 -3.5663 -1.7108 17 8 2.1224 -2.6065 -2.3890 18 7 0.9817 -4.4997 -2.1981 19 6 0.4293 -4.3552 -3.5472 20 6 -0.4882 -5.5409 -3.8523 21 6 -1.0646 -5.3903 -5.2616 22 6 -1.9688 -6.5578 -5.5620 23 1 -2.1179 -7.3299 -4.8216 24 6 -2.6058 -6.6404 -6.7819 25 7 -2.4247 -5.7001 -7.6834 26 14 -3.7261 -8.0881 -7.1545 27 1 -5.1122 -7.7628 -6.7325 28 1 -3.7053 -8.3675 -8.6129 29 1 -3.2512 -9.2847 -6.4144 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.3507 -1.1636 4.3887 38 1 3.6138 -2.9489 2.8615 39 1 4.9322 -4.1495 -1.4740 40 1 5.4850 -4.9615 0.0245 41 1 3.0965 -5.6531 -1.0531 42 1 3.2251 -5.4459 0.7248 43 1 0.7413 -5.2668 -1.6552 44 1 -0.1412 -3.4285 -3.6089 45 1 1.2430 -4.3298 -4.2721 46 1 0.0826 -6.4673 -3.7908 47 1 -1.3019 -5.5666 -3.1275 48 1 -1.6354 -4.4637 -5.3237 49 1 -0.2507 -5.3648 -5.9862 50 1 -2.8726 -5.7584 -8.5419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277442303.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:10 Heat of formation + Delta-G solvation = -45.292280 kcal Electronic energy + Delta-G solvation = -29500.744381 eV Core-core repulsion = 25528.159721 eV Total energy + Delta-G solvation = -3972.584660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -42.57078 -41.34245 -39.52452 -37.01524 -36.62572 -35.25810 -33.86156 -32.94429 -32.45667 -30.76016 -29.26697 -28.51026 -28.32257 -25.60801 -24.23914 -23.94945 -23.40428 -22.33696 -21.55933 -21.03785 -20.37130 -18.86503 -18.53222 -17.97768 -17.26629 -16.96659 -16.51754 -16.48905 -16.10413 -16.04537 -15.99806 -15.67241 -15.32634 -15.00305 -14.80204 -14.36128 -14.26723 -14.02686 -13.87989 -13.78324 -13.56479 -13.23140 -13.13266 -12.99644 -12.86673 -12.74326 -12.56936 -12.45134 -12.39365 -12.33755 -12.28995 -12.17289 -11.68725 -11.63110 -11.54661 -11.25545 -11.00494 -10.79618 -10.56133 -10.26357 -10.16548 -9.49101 -8.20429 -6.31698 0.79215 1.41192 1.41743 1.42334 1.45561 1.53269 1.87883 2.05269 2.41569 2.78438 3.13741 3.24638 3.31968 3.47314 3.60467 3.85346 3.87693 3.92932 3.99180 4.09710 4.16284 4.17373 4.19914 4.28823 4.49846 4.53880 4.56502 4.58881 4.65193 4.68328 4.78485 4.79986 4.83487 4.87709 4.93248 4.95806 5.00756 5.08165 5.10236 5.16088 5.22477 5.37868 5.51555 5.68518 5.70114 5.78426 5.83692 6.02097 6.21337 6.45838 6.75949 6.86166 7.11372 7.38195 8.91570 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.002360 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.808110 B =11863.290770 C =12757.366173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.142 3.858 3 C -0.152 4.152 4 N -0.361 5.361 5 N -0.315 5.315 6 C 0.038 3.962 7 C -0.250 4.250 8 C 0.064 3.936 9 C 0.157 3.843 10 H 0.080 0.920 11 O -0.369 6.369 12 C 0.039 3.961 13 C -0.135 4.135 14 C -0.129 4.129 15 H 0.127 0.873 16 C 0.517 3.483 17 O -0.576 6.576 18 N -0.708 5.708 19 C 0.131 3.869 20 C -0.102 4.102 21 C 0.024 3.976 22 C -0.540 4.540 23 H 0.066 0.934 24 C -0.003 4.003 25 N -0.935 5.935 26 Si 0.965 3.035 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.260 1.260 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.213 0.787 38 H 0.164 0.836 39 H 0.055 0.945 40 H 0.129 0.871 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.416 0.584 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.066 0.934 48 H -0.009 1.009 49 H -0.007 1.007 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.752 4.704 22.468 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 C -0.210 4.210 4 N -0.146 5.146 5 N -0.137 5.137 6 C -0.146 4.146 7 C -0.279 4.279 8 C -0.063 4.063 9 C 0.097 3.903 10 H 0.097 0.903 11 O -0.287 6.287 12 C -0.037 4.037 13 C -0.172 4.172 14 C -0.151 4.151 15 H 0.145 0.855 16 C 0.304 3.696 17 O -0.456 6.456 18 N -0.359 5.359 19 C 0.007 3.993 20 C -0.140 4.140 21 C -0.014 4.014 22 C -0.578 4.578 23 H 0.085 0.915 24 C -0.200 4.200 25 N -0.575 5.575 26 Si 0.789 3.211 27 H -0.199 1.199 28 H -0.211 1.211 29 H -0.184 1.184 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.230 0.770 38 H 0.182 0.818 39 H 0.073 0.927 40 H 0.147 0.853 41 H 0.118 0.882 42 H 0.138 0.862 43 H 0.253 0.747 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.009 0.991 49 H 0.011 0.989 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.283 6.637 21.751 25.846 hybrid contribution -0.436 -1.370 -0.770 1.631 sum 11.847 5.268 20.981 24.664 Atomic orbital electron populations 1.22029 0.92641 1.02327 1.03815 1.21535 0.96211 0.94748 0.83407 1.22062 1.01208 0.93680 1.04009 1.48917 1.39019 1.20963 1.05675 1.77280 1.25159 1.24457 0.86755 1.24408 0.95995 0.92797 1.01436 1.21444 1.10082 1.06044 0.90351 1.20934 0.97265 0.91008 0.97143 1.20772 0.83390 0.93857 0.92320 0.90287 1.88910 1.30867 1.37863 1.71104 1.23856 0.98666 0.84135 0.97035 1.23248 0.92556 0.95091 1.06318 1.22634 1.00666 0.97556 0.94250 0.85538 1.20660 0.78337 0.81992 0.88644 1.90670 1.61111 1.32572 1.61237 1.45914 1.46641 1.26193 1.17127 1.21255 0.96428 0.98916 0.82734 1.21595 0.97858 0.96578 0.97958 1.18936 0.94610 0.95622 0.92214 1.21684 1.27436 1.08310 1.00383 0.91535 1.25999 0.98552 0.99179 0.96310 1.70103 1.44753 1.35620 1.07072 0.85451 0.78913 0.79448 0.77262 1.19924 1.21112 1.18353 0.93371 0.91326 0.89378 0.88456 0.92799 0.88903 0.91481 0.77046 0.81843 0.92685 0.85270 0.88201 0.86181 0.74659 0.93153 0.92871 0.91158 0.91501 0.99063 0.98898 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.45 71.98 0.68 -2.48 16 2 C 0.14 3.21 3.64 44.99 0.16 3.38 16 3 C -0.15 -2.94 9.45 71.98 0.68 -2.26 16 4 N -0.36 -8.76 3.28 -314.28 -1.03 -9.79 16 5 N -0.31 -7.67 12.43 -57.02 -0.71 -8.38 16 6 C 0.04 0.74 12.03 85.23 1.02 1.77 16 7 C -0.25 -4.96 10.36 21.99 0.23 -4.73 16 8 C 0.06 1.47 5.79 41.41 0.24 1.71 16 9 C 0.16 3.49 3.16 30.22 0.10 3.59 16 10 H 0.08 2.17 5.23 -2.38 -0.01 2.16 16 11 O -0.37 -7.79 10.88 -148.98 -1.62 -9.41 16 12 C 0.04 0.57 7.72 72.66 0.56 1.14 16 13 C -0.13 -1.62 6.70 31.89 0.21 -1.41 16 14 C -0.13 -2.35 3.06 -10.55 -0.03 -2.38 16 15 H 0.13 2.05 7.69 -2.39 -0.02 2.03 16 16 C 0.52 12.90 7.05 87.66 0.62 13.52 16 17 O -0.58 -18.89 14.69 -3.02 -0.04 -18.94 16 18 N -0.71 -16.77 5.41 -463.07 -2.50 -19.27 16 19 C 0.13 4.18 5.67 86.38 0.49 4.67 16 20 C -0.10 -3.65 5.27 30.59 0.16 -3.49 16 21 C 0.02 1.19 4.97 29.85 0.15 1.34 16 22 C -0.54 -29.30 9.11 25.60 0.23 -29.07 16 23 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 24 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 25 N -0.94 -56.18 13.29 21.45 0.28 -55.90 16 26 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 29 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.10 2.46 6.01 -2.39 -0.01 2.44 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.21 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 39 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.10 1.08 7.74 -2.39 -0.02 1.06 16 42 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.42 7.17 8.47 -92.71 -0.79 6.39 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 46 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 48 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 50 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -72.21 409.16 2.51 -69.69 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.14 Total: 21.45 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 5.97 Total: -14.38 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -3.96 Total: -93.33 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -1.66 Total: -28.35 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -72.21 2.51 -69.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277442303.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.401 kcal (2) G-P(sol) polarization free energy of solvation -72.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds