Wall clock time and date at job start Tue Mar 31 2020 19:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47310 * 143.93159 * 3 2 1 5 5 C 1.37108 * 119.99955 * 276.90193 * 4 3 2 6 6 H 1.07994 * 120.00054 * 136.47535 * 5 4 3 7 7 C 1.38950 * 119.99864 * 316.47638 * 5 4 3 8 8 N 1.31411 * 119.99916 * 172.10334 * 7 5 4 9 9 Si 1.86807 * 120.00073 * 352.10864 * 7 5 4 10 10 H 1.48500 * 109.47174 * 91.84148 * 9 7 5 11 11 H 1.48502 * 109.46953 * 211.84591 * 9 7 5 12 12 H 1.48509 * 109.46764 * 331.84265 * 9 7 5 13 13 C 1.34772 * 120.00412 * 96.90090 * 4 3 2 14 14 O 1.21291 * 120.00445 * 177.27034 * 13 4 3 15 15 C 1.50703 * 119.99863 * 357.27056 * 13 4 3 16 16 N 1.46503 * 109.47131 * 48.65145 * 15 13 4 17 17 C 1.34771 * 119.99904 * 53.88093 * 16 15 13 18 18 O 1.21593 * 120.00083 * 354.24764 * 17 16 15 19 19 N 1.34769 * 120.00273 * 174.24494 * 17 16 15 20 20 C 1.46500 * 120.00424 * 180.02562 * 19 17 16 21 21 C 1.53007 * 109.47072 * 85.00195 * 20 19 17 22 22 C 1.53004 * 109.47458 * 205.00074 * 20 19 17 23 23 C 1.52995 * 109.47237 * 168.65637 * 15 13 4 24 24 C 1.53005 * 109.47153 * 180.02562 * 23 15 13 25 25 C 1.52998 * 109.46987 * 299.99949 * 24 23 15 26 26 C 1.53001 * 109.47441 * 59.99659 * 25 24 23 27 27 C 1.52996 * 109.47309 * 300.00291 * 26 25 24 28 28 H 4.40637 * 5.51504 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.46910 * 23.92892 * 3 2 1 30 30 H 1.08998 * 109.47167 * 263.93044 * 3 2 1 31 31 H 0.96998 * 119.99406 * 180.02562 * 8 7 5 32 32 H 0.96994 * 120.00199 * 233.88474 * 16 15 13 33 33 H 0.97005 * 120.00192 * 0.02562 * 19 17 16 34 34 H 1.09003 * 109.47174 * 325.00372 * 20 19 17 35 35 H 1.08999 * 109.46999 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.46796 * 300.00134 * 21 20 19 37 37 H 1.09003 * 109.46976 * 60.00056 * 21 20 19 38 38 H 1.09001 * 109.46594 * 60.00019 * 22 20 19 39 39 H 1.08997 * 109.46865 * 180.02562 * 22 20 19 40 40 H 1.09003 * 109.47171 * 300.00300 * 22 20 19 41 41 H 1.09005 * 109.47318 * 299.99520 * 23 15 13 42 42 H 1.09000 * 109.47480 * 59.99714 * 23 15 13 43 43 H 1.08994 * 109.47363 * 179.97438 * 24 23 15 44 44 H 1.09000 * 109.47186 * 59.99503 * 24 23 15 45 45 H 1.09003 * 109.47287 * 299.99797 * 25 24 23 46 46 H 1.08996 * 109.47379 * 180.02562 * 25 24 23 47 47 H 1.08996 * 109.46958 * 180.02562 * 26 25 24 48 48 H 1.09003 * 109.46767 * 59.99820 * 26 25 24 49 49 H 1.09000 * 109.47066 * 299.99951 * 27 26 25 50 50 H 1.08994 * 109.47364 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1173 -0.8132 5 6 3.2279 0.9842 -2.1745 6 1 2.8960 1.7842 -2.8195 7 6 3.7504 -0.1801 -2.7243 8 7 3.6988 -0.3742 -4.0229 9 14 4.5260 -1.4695 -1.6173 10 1 3.4967 -2.4623 -1.2171 11 1 5.6193 -2.1577 -2.3496 12 1 5.0787 -0.8134 -0.4050 13 6 3.4902 2.2754 -0.2232 14 8 3.9407 3.1826 -0.8905 15 6 3.3290 2.4433 1.2658 16 7 3.8999 1.2822 1.9528 17 6 5.1707 0.9092 1.7033 18 8 5.8092 1.4697 0.8335 19 7 5.7339 -0.0850 2.4179 20 6 7.1155 -0.4901 2.1471 21 6 8.0739 0.4138 2.9252 22 6 7.3162 -1.9426 2.5844 23 6 4.0557 3.7116 1.7177 24 6 3.8926 3.8817 3.2294 25 6 2.4059 3.9962 3.5722 26 6 1.6790 2.7280 3.1203 27 6 1.8422 2.5579 1.6086 28 1 -1.0501 -0.0003 0.0000 29 1 3.0097 -0.9385 -0.4168 30 1 3.0093 0.1095 1.0219 31 1 4.0632 -1.1871 -4.4066 32 1 3.3633 0.7818 2.5872 33 1 5.2245 -0.5325 3.1116 34 1 7.3177 -0.4008 1.0797 35 1 9.1018 0.1127 2.7233 36 1 7.9308 1.4485 2.6136 37 1 7.8716 0.3245 3.9925 38 1 6.6335 -2.5865 2.0300 39 1 8.3443 -2.2437 2.3833 40 1 7.1140 -2.0319 3.6518 41 1 5.1150 3.6298 1.4739 42 1 3.6310 4.5755 1.2065 43 1 4.4107 4.7849 3.5515 44 1 4.3176 3.0177 3.7403 45 1 1.9807 4.8602 3.0614 46 1 2.2896 4.1179 4.6491 47 1 0.6199 2.8099 3.3641 48 1 2.1042 1.8640 3.6311 49 1 1.4172 3.4219 1.0977 50 1 1.3248 1.6542 1.2867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282063390.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:23 Heat of formation + Delta-G solvation = 20.030610 kcal Electronic energy + Delta-G solvation = -32667.105039 eV Core-core repulsion = 28697.352992 eV Total energy + Delta-G solvation = -3969.752047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05882 -38.79594 -37.34125 -35.76141 -35.38465 -33.67493 -32.57430 -31.55140 -31.26598 -30.63677 -29.13793 -27.25737 -26.67518 -25.22784 -22.85393 -22.56745 -21.88572 -20.58086 -19.66153 -18.75484 -18.49896 -18.37767 -16.72629 -16.31633 -16.02039 -15.65105 -15.44152 -15.06170 -14.58121 -14.32833 -14.10854 -13.92640 -13.67433 -13.56772 -13.18165 -12.89890 -12.86085 -12.52603 -12.48511 -12.38273 -12.21781 -12.07678 -12.00430 -11.91845 -11.70251 -11.38910 -11.05265 -10.98662 -10.86771 -10.65659 -10.51224 -10.44424 -10.21166 -10.02751 -9.75160 -9.62337 -9.38006 -9.00189 -8.93631 -8.82335 -8.01435 -7.66866 -6.22818 -3.92884 2.75037 3.05932 3.20946 3.24611 3.30942 3.37689 3.55913 3.82046 4.25759 4.37573 4.49880 4.80765 4.82778 4.85184 4.91673 4.97222 5.05431 5.20113 5.23790 5.33932 5.38624 5.50543 5.51149 5.58775 5.59331 5.65809 5.71483 5.72547 5.81076 5.86460 5.90526 6.01637 6.07230 6.08098 6.09391 6.21519 6.25069 6.26258 6.33918 6.41197 6.45199 6.64713 6.74168 6.79404 7.04588 7.70078 8.10513 8.19851 8.39997 8.61483 8.93378 9.07135 9.40666 9.86222 10.89060 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008668 B = 0.007732 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3229.465236 B = 3620.299677 C = 5429.070786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.167 4.167 3 C 0.162 3.838 4 N -0.457 5.457 5 C -0.304 4.304 6 H 0.101 0.899 7 C 0.059 3.941 8 N -0.877 5.877 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.249 1.249 13 C 0.495 3.505 14 O -0.541 6.541 15 C 0.184 3.816 16 N -0.733 5.733 17 C 0.698 3.302 18 O -0.548 6.548 19 N -0.746 5.746 20 C 0.153 3.847 21 C -0.160 4.160 22 C -0.160 4.160 23 C -0.109 4.109 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.114 4.114 27 C -0.136 4.136 28 H 0.212 0.788 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.390 0.610 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.083 0.917 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 -1.623 21.356 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.169 4.169 3 C 0.039 3.961 4 N -0.179 5.179 5 C -0.432 4.432 6 H 0.119 0.881 7 C -0.146 4.146 8 N -0.514 5.514 9 Si 0.712 3.288 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.173 1.173 13 C 0.281 3.719 14 O -0.419 6.419 15 C 0.095 3.905 16 N -0.394 5.394 17 C 0.398 3.602 18 O -0.421 6.421 19 N -0.403 5.403 20 C 0.048 3.952 21 C -0.219 4.219 22 C -0.218 4.218 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.157 4.157 26 C -0.151 4.151 27 C -0.173 4.173 28 H 0.229 0.771 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.081 0.919 32 H 0.229 0.771 33 H 0.223 0.777 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.425 -0.684 19.975 19.991 hybrid contribution -0.431 -1.525 0.890 1.817 sum -0.006 -2.209 20.866 20.982 Atomic orbital electron populations 1.24706 0.95616 1.01688 1.02469 1.23891 0.95035 0.99190 0.98764 1.19804 0.83789 0.93299 0.99207 1.43441 1.57089 1.10741 1.06646 1.19004 1.40509 1.04639 0.79011 0.88110 1.25397 0.95305 0.98273 0.95584 1.69651 1.44273 1.26983 1.10542 0.86841 0.78923 0.80980 0.82026 1.21030 1.21945 1.17306 1.19999 0.79883 0.84352 0.87642 1.90561 1.45723 1.40756 1.64846 1.20456 0.93619 0.85508 0.90961 1.45611 1.12627 1.33039 1.48121 1.15955 0.81604 0.80773 0.81909 1.91059 1.62010 1.56305 1.32726 1.45235 1.15049 1.39272 1.40717 1.20767 0.79986 0.93162 1.01299 1.22179 0.98898 1.01027 0.99774 1.22080 1.02799 0.95411 1.01469 1.21645 1.02463 0.96110 0.94577 1.21505 0.95895 1.01336 0.96446 1.21566 0.95877 0.98034 1.00237 1.21502 1.00343 0.98044 0.95237 1.22092 0.93665 1.04855 0.96737 0.77084 0.90837 0.86879 0.91868 0.77119 0.77717 0.89262 0.91972 0.91875 0.92894 0.92023 0.90994 0.92252 0.90035 0.90454 0.92166 0.92269 0.91823 0.92325 0.91574 0.92297 0.89864 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.75 18.84 29.55 0.56 -3.20 16 2 C -0.17 -3.25 11.06 -37.12 -0.41 -3.66 16 3 C 0.16 3.44 3.92 -6.83 -0.03 3.41 16 4 N -0.46 -11.61 2.14 -117.94 -0.25 -11.86 16 5 C -0.30 -9.17 9.28 -14.93 -0.14 -9.31 16 6 H 0.10 3.40 8.04 -52.49 -0.42 2.98 16 7 C 0.06 1.75 5.46 -17.47 -0.10 1.66 16 8 N -0.88 -27.16 13.96 55.50 0.77 -26.39 16 9 Si 0.88 22.04 24.64 -169.99 -4.19 17.85 16 10 H -0.28 -6.64 6.84 56.52 0.39 -6.25 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.25 -6.01 6.03 56.52 0.34 -5.67 16 13 C 0.49 12.10 4.64 -10.99 -0.05 12.04 16 14 O -0.54 -15.61 15.93 5.55 0.09 -15.52 16 15 C 0.18 3.24 0.25 -132.97 -0.03 3.21 16 16 N -0.73 -11.05 1.70 -53.50 -0.09 -11.14 16 17 C 0.70 12.06 6.54 -86.93 -0.57 11.49 16 18 O -0.55 -12.51 13.36 5.28 0.07 -12.43 16 19 N -0.75 -9.75 5.08 -58.67 -0.30 -10.04 16 20 C 0.15 1.96 3.18 -67.93 -0.22 1.74 16 21 C -0.16 -1.81 9.48 37.16 0.35 -1.45 16 22 C -0.16 -1.50 9.38 37.16 0.35 -1.16 16 23 C -0.11 -1.84 3.98 -26.73 -0.11 -1.94 16 24 C -0.11 -1.39 5.77 -26.73 -0.15 -1.55 16 25 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 26 C -0.11 -1.18 5.75 -26.73 -0.15 -1.34 16 27 C -0.14 -1.97 4.63 -26.73 -0.12 -2.10 16 28 H 0.21 2.58 7.80 -54.08 -0.42 2.16 16 29 H 0.07 1.69 2.60 -51.93 -0.13 1.56 16 30 H 0.11 2.01 3.35 -60.41 -0.20 1.80 16 31 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.39 4.44 6.48 -40.82 -0.26 4.18 16 33 H 0.39 3.65 8.62 -40.82 -0.35 3.29 16 34 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 1.62 6.83 -51.93 -0.35 1.27 16 42 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.70 7.60 -51.93 -0.39 0.30 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.53 6.74 -51.93 -0.35 0.18 16 49 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.09 1.35 3.95 -51.93 -0.20 1.14 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -38.24 380.31 -6.91 -45.15 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.77 Total: 12.20 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.98 Total: 6.46 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.13 Total: -59.43 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: 0.16 Total: -27.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.19 Total: 17.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.24 -6.91 -45.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282063390.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.181 kcal (2) G-P(sol) polarization free energy of solvation -38.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds