Wall clock time and date at job start Tue Mar 31 2020 18:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47132 * 2 1 4 4 H 1.08999 * 109.47169 * 304.99910 * 3 2 1 5 5 C 1.52998 * 109.47163 * 185.00014 * 3 2 1 6 6 C 1.47201 * 109.47359 * 174.99899 * 5 3 2 7 7 N 4.86390 * 126.40414 * 355.02373 * 2 1 3 8 8 N 1.46495 * 109.47264 * 64.99952 * 3 2 1 9 9 C 1.34783 * 120.00094 * 274.99742 * 8 3 2 10 10 O 1.21281 * 119.99572 * 359.97438 * 9 8 3 11 11 C 1.50697 * 119.99792 * 180.02562 * 9 8 3 12 12 H 1.08995 * 115.55642 * 34.33429 * 11 9 8 13 13 C 1.53006 * 117.49447 * 248.61873 * 11 9 8 14 14 C 1.52994 * 117.50127 * 0.02562 * 13 11 9 15 15 C 1.52999 * 60.00089 * 252.51546 * 13 11 9 16 16 H 1.09002 * 117.49803 * 107.49109 * 15 13 11 17 17 C 1.50700 * 117.51845 * 252.51832 * 15 13 11 18 18 O 1.21288 * 119.99910 * 68.71707 * 17 15 13 19 19 N 1.34770 * 119.99999 * 248.71846 * 17 15 13 20 20 C 1.46511 * 119.99717 * 179.97438 * 19 17 15 21 21 H 1.08996 * 109.46701 * 35.00046 * 20 19 17 22 22 C 1.50705 * 109.46866 * 154.99816 * 20 19 17 23 23 H 1.08001 * 119.99901 * 0.02562 * 22 20 19 24 24 C 1.37875 * 119.99633 * 179.97438 * 22 20 19 25 25 N 1.31513 * 120.00104 * 0.02562 * 24 22 20 26 26 Si 1.86798 * 119.99724 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47168 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46983 * 120.00428 * 26 24 22 29 29 H 1.48503 * 109.47427 * 240.00416 * 26 24 22 30 30 C 1.53001 * 109.47301 * 274.99988 * 20 19 17 31 31 C 1.53001 * 109.46812 * 64.99775 * 30 20 19 32 32 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46526 * 300.00167 * 1 2 3 34 34 H 1.08998 * 109.47013 * 60.00288 * 1 2 3 35 35 H 1.09003 * 109.47184 * 239.99531 * 2 1 3 36 36 H 1.09003 * 109.46700 * 120.00030 * 2 1 3 37 37 H 1.09006 * 109.47234 * 295.00170 * 5 3 2 38 38 H 1.09001 * 109.47224 * 54.99865 * 5 3 2 39 39 H 0.97004 * 120.00479 * 95.00083 * 8 3 2 40 40 H 1.09003 * 117.49619 * 145.02243 * 13 11 9 41 41 H 1.09004 * 109.47192 * 299.98132 * 14 13 11 42 42 H 1.09004 * 109.47484 * 59.97988 * 14 13 11 43 43 H 1.08997 * 109.47569 * 179.97438 * 14 13 11 44 44 H 0.96997 * 120.00729 * 359.97438 * 19 17 15 45 45 H 0.96999 * 119.99938 * 179.97438 * 25 24 22 46 46 H 1.08994 * 109.47547 * 185.00252 * 30 20 19 47 47 H 1.09007 * 109.46697 * 305.00455 * 30 20 19 48 48 H 1.08994 * 109.46869 * 60.00510 * 31 30 20 49 49 H 1.09003 * 109.46525 * 180.02562 * 31 30 20 50 50 H 1.08999 * 109.47479 * 300.00042 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 6 4.0456 2.8303 -0.2464 7 7 4.4167 3.9000 -0.3396 8 7 1.6525 2.0974 1.2517 9 6 0.4352 2.6644 1.3669 10 8 -0.3391 2.6327 0.4340 11 6 0.0368 3.3387 2.6544 12 1 0.8411 3.8441 3.1889 13 6 -1.0592 2.6742 3.4901 14 6 -1.6663 1.3758 2.9549 15 6 -1.3583 3.9634 2.7223 16 1 -1.9878 3.8867 1.8358 17 6 -1.5151 5.2303 3.5232 18 8 -0.5551 5.7171 4.0822 19 7 -2.7221 5.8223 3.6183 20 6 -2.8746 7.0536 4.3975 21 1 -1.9739 7.6595 4.2993 22 6 -4.0604 7.8293 3.8840 23 1 -4.6423 7.4434 3.0601 24 6 -4.4027 9.0310 4.4668 25 7 -3.6944 9.5006 5.4704 26 14 -5.8729 9.9920 3.8308 27 1 -6.4974 9.2532 2.7042 28 1 -6.8650 10.1592 4.9230 29 1 -5.4253 11.3274 3.3599 30 6 -3.0944 6.7015 5.8701 31 6 -1.8399 6.0241 6.4251 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 4.0030 0.9835 0.7597 38 1 3.8571 0.8800 -1.0113 39 1 2.2720 2.1232 1.9978 40 1 -0.9758 2.7421 4.5748 41 1 -2.1194 1.5609 1.9810 42 1 -0.8841 0.6232 2.8545 43 1 -2.4277 1.0180 3.6479 44 1 -3.4898 5.4332 3.1711 45 1 -3.9350 10.3462 5.8801 46 1 -3.2962 7.6115 6.4351 47 1 -3.9430 6.0231 5.9586 48 1 -0.9913 6.7024 6.3365 49 1 -1.9967 5.7728 7.4742 50 1 -1.6381 5.1140 5.8602 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294870917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:47 Heat of formation + Delta-G solvation = -43.105204 kcal Electronic energy + Delta-G solvation = -29425.305299 eV Core-core repulsion = 25452.815478 eV Total energy + Delta-G solvation = -3972.489821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73504 -39.22620 -37.71372 -36.52480 -35.73047 -34.83186 -32.70221 -32.32986 -31.00858 -30.89198 -28.85485 -27.16180 -25.67950 -24.40304 -23.05148 -22.04329 -21.17517 -20.19464 -19.82986 -19.28477 -17.99552 -17.74334 -16.84330 -16.63318 -15.95182 -15.42695 -15.39216 -14.75387 -14.61179 -14.51301 -14.42960 -14.16877 -13.77943 -13.41254 -13.30497 -13.23093 -12.93381 -12.70314 -12.60059 -12.44927 -12.37651 -12.01574 -11.99347 -11.88490 -11.69254 -11.48116 -11.43571 -11.25721 -11.13291 -10.96172 -10.84142 -10.40336 -10.29996 -10.20737 -10.08350 -9.85590 -9.61458 -9.33626 -9.04088 -8.96747 -8.48945 -7.80796 -6.11256 -4.20264 2.32756 2.40247 2.45336 2.79955 3.13980 3.24994 3.33019 3.36037 3.51027 3.95616 4.03701 4.20285 4.37162 4.55091 4.61300 4.65003 4.74130 4.84559 4.88445 4.96374 5.09005 5.11790 5.20561 5.24272 5.39530 5.52443 5.60595 5.65692 5.68495 5.70381 5.81040 5.89655 6.02963 6.12813 6.21355 6.27084 6.38277 6.45010 6.65237 7.03505 7.19187 7.19882 7.25881 7.36922 7.46684 7.63514 7.74809 7.91720 8.06292 8.19107 8.69356 8.79474 9.15251 9.47253 10.94180 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.002478 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.383848 B =11297.479638 C =11629.942785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C 0.148 3.852 4 H 0.098 0.902 5 C -0.033 4.033 6 C 0.195 3.805 7 N -0.421 5.421 8 N -0.728 5.728 9 C 0.554 3.446 10 O -0.527 6.527 11 C -0.167 4.167 12 H 0.134 0.866 13 C -0.097 4.097 14 C -0.129 4.129 15 C -0.145 4.145 16 H 0.131 0.869 17 C 0.529 3.471 18 O -0.550 6.550 19 N -0.701 5.701 20 C 0.270 3.730 21 H 0.049 0.951 22 C -0.533 4.533 23 H 0.062 0.938 24 C 0.066 3.934 25 N -0.883 5.883 26 Si 0.901 3.099 27 H -0.272 1.272 28 H -0.283 1.283 29 H -0.283 1.283 30 C -0.127 4.127 31 C -0.136 4.136 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.402 0.598 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.390 0.610 45 H 0.264 0.736 46 H 0.099 0.901 47 H 0.031 0.969 48 H 0.049 0.951 49 H 0.022 0.978 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.561 -24.095 -7.751 27.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.042 3.958 4 H 0.116 0.884 5 C -0.074 4.074 6 C -0.123 4.123 7 N -0.097 5.097 8 N -0.381 5.381 9 C 0.341 3.659 10 O -0.403 6.403 11 C -0.189 4.189 12 H 0.152 0.848 13 C -0.116 4.116 14 C -0.186 4.186 15 C -0.167 4.167 16 H 0.149 0.851 17 C 0.313 3.687 18 O -0.429 6.429 19 N -0.347 5.347 20 C 0.168 3.832 21 H 0.067 0.933 22 C -0.571 4.571 23 H 0.080 0.920 24 C -0.137 4.137 25 N -0.520 5.520 26 Si 0.728 3.272 27 H -0.197 1.197 28 H -0.209 1.209 29 H -0.209 1.209 30 C -0.166 4.166 31 C -0.194 4.194 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.237 0.763 40 H 0.136 0.864 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.222 0.778 45 H 0.074 0.926 46 H 0.117 0.883 47 H 0.050 0.950 48 H 0.068 0.932 49 H 0.041 0.959 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.232 -21.950 -8.047 25.937 hybrid contribution -0.882 0.109 -0.097 0.894 sum 10.350 -21.841 -8.144 25.504 Atomic orbital electron populations 1.21928 0.94395 1.00940 1.03887 1.21941 0.97747 0.94582 1.02675 1.21012 0.91335 0.94753 0.88745 0.88406 1.19650 0.95495 0.85649 1.06565 1.29036 0.94051 0.95177 0.94031 1.81309 1.08452 1.11968 1.08012 1.45980 1.17231 1.58614 1.16280 1.19549 0.81075 0.76944 0.88320 1.90703 1.51162 1.58354 1.40106 1.22265 0.94790 1.04596 0.97210 0.84793 1.22365 0.98091 0.92702 0.98423 1.21535 1.00649 0.94583 1.01861 1.22541 0.98027 0.93760 1.02390 0.85125 1.19333 0.84163 0.84272 0.80917 1.90664 1.39205 1.65259 1.47816 1.46404 1.08742 1.27926 1.51645 1.18809 0.97779 0.79685 0.86908 0.93333 1.21281 1.13012 1.05330 1.17492 0.91993 1.24885 0.96900 0.97151 0.94778 1.69903 1.39035 1.20192 1.22899 0.86405 0.82158 0.79847 0.78776 1.19704 1.20883 1.20902 1.21930 0.94494 1.00938 0.99236 1.21834 0.99788 1.00240 0.97505 0.93393 0.91524 0.92025 0.90677 0.91272 0.86701 0.85695 0.76301 0.86429 0.91247 0.92034 0.91451 0.77782 0.92641 0.88290 0.94998 0.93200 0.95882 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.52 37.16 0.32 -0.83 16 2 C -0.13 -0.57 5.61 -26.73 -0.15 -0.72 16 3 C 0.15 0.82 2.23 -67.94 -0.15 0.67 16 4 H 0.10 0.78 7.57 -51.93 -0.39 0.39 16 5 C -0.03 -0.09 5.25 -29.52 -0.16 -0.25 16 6 C 0.20 1.59 15.14 -20.76 -0.31 1.28 16 7 N -0.42 -5.27 18.54 42.15 0.78 -4.49 16 8 N -0.73 -5.49 4.73 -53.81 -0.25 -5.75 16 9 C 0.55 6.32 5.28 -10.98 -0.06 6.27 16 10 O -0.53 -7.35 12.85 5.56 0.07 -7.28 16 11 C -0.17 -2.13 5.70 -91.77 -0.52 -2.65 16 12 H 0.13 1.80 7.67 -51.93 -0.40 1.40 16 13 C -0.10 -1.13 6.11 -90.62 -0.55 -1.69 16 14 C -0.13 -1.22 8.39 37.15 0.31 -0.91 16 15 C -0.15 -2.18 5.35 -91.77 -0.49 -2.67 16 16 H 0.13 1.94 7.58 -51.93 -0.39 1.54 16 17 C 0.53 10.40 6.18 -10.99 -0.07 10.34 16 18 O -0.55 -12.56 13.40 5.55 0.07 -12.49 16 19 N -0.70 -14.61 5.02 -54.92 -0.28 -14.89 16 20 C 0.27 6.81 2.24 -69.07 -0.15 6.66 16 21 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 22 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 23 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 24 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 25 N -0.88 -24.88 11.29 55.43 0.63 -24.26 16 26 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 31 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.60 3.59 -51.93 -0.19 0.41 16 34 H 0.06 0.56 7.85 -51.93 -0.41 0.15 16 35 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.11 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.13 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.40 2.22 8.60 -40.82 -0.35 1.87 16 40 H 0.12 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.07 0.74 7.32 -51.93 -0.38 0.36 16 42 H 0.06 0.50 7.14 -51.93 -0.37 0.13 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.39 7.20 8.54 -40.82 -0.35 6.85 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 LS Contribution 402.88 15.07 6.07 6.07 Total: -1.00 -34.63 402.88 -8.12 -42.75 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -7.98 Total: 7.72 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.22 Total: -3.22 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.88 Total: -49.38 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.15 Total: -19.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.63 -8.12 -42.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294870917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.353 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds