Wall clock time and date at job start Tue Mar 31 2020 18:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47132 * 2 1 4 4 H 1.08999 * 109.47169 * 304.99910 * 3 2 1 5 5 C 1.52998 * 109.47163 * 185.00014 * 3 2 1 6 6 C 1.47201 * 109.47359 * 174.99899 * 5 3 2 7 7 N 4.86390 * 126.40414 * 355.02373 * 2 1 3 8 8 N 1.46495 * 109.47264 * 64.99952 * 3 2 1 9 9 C 1.34783 * 120.00094 * 274.99742 * 8 3 2 10 10 O 1.21281 * 119.99572 * 359.97438 * 9 8 3 11 11 C 1.50697 * 119.99792 * 180.02562 * 9 8 3 12 12 H 1.08995 * 115.55642 * 34.33429 * 11 9 8 13 13 C 1.53006 * 117.49447 * 248.61873 * 11 9 8 14 14 C 1.52994 * 117.50127 * 0.02562 * 13 11 9 15 15 C 1.52999 * 60.00089 * 252.51546 * 13 11 9 16 16 H 1.09002 * 117.49803 * 107.49109 * 15 13 11 17 17 C 1.50700 * 117.51845 * 252.51832 * 15 13 11 18 18 O 1.21288 * 119.99910 * 68.71707 * 17 15 13 19 19 N 1.34770 * 119.99999 * 248.71846 * 17 15 13 20 20 C 1.46511 * 119.99717 * 179.97438 * 19 17 15 21 21 H 1.08996 * 109.46701 * 35.00046 * 20 19 17 22 22 C 1.50705 * 109.46866 * 154.99816 * 20 19 17 23 23 H 1.08001 * 119.99901 * 0.02562 * 22 20 19 24 24 C 1.37875 * 119.99633 * 179.97438 * 22 20 19 25 25 N 1.31513 * 120.00104 * 0.02562 * 24 22 20 26 26 Si 1.86798 * 119.99724 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47168 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.46983 * 120.00428 * 26 24 22 29 29 H 1.48503 * 109.47427 * 240.00416 * 26 24 22 30 30 C 1.53001 * 109.47301 * 274.99988 * 20 19 17 31 31 C 1.53001 * 109.46812 * 64.99775 * 30 20 19 32 32 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46526 * 300.00167 * 1 2 3 34 34 H 1.08998 * 109.47013 * 60.00288 * 1 2 3 35 35 H 1.09003 * 109.47184 * 239.99531 * 2 1 3 36 36 H 1.09003 * 109.46700 * 120.00030 * 2 1 3 37 37 H 1.09006 * 109.47234 * 295.00170 * 5 3 2 38 38 H 1.09001 * 109.47224 * 54.99865 * 5 3 2 39 39 H 0.97004 * 120.00479 * 95.00083 * 8 3 2 40 40 H 1.09003 * 117.49619 * 145.02243 * 13 11 9 41 41 H 1.09004 * 109.47192 * 299.98132 * 14 13 11 42 42 H 1.09004 * 109.47484 * 59.97988 * 14 13 11 43 43 H 1.08997 * 109.47569 * 179.97438 * 14 13 11 44 44 H 0.96997 * 120.00729 * 359.97438 * 19 17 15 45 45 H 0.96999 * 119.99938 * 179.97438 * 25 24 22 46 46 H 1.08994 * 109.47547 * 185.00252 * 30 20 19 47 47 H 1.09007 * 109.46697 * 305.00455 * 30 20 19 48 48 H 1.08994 * 109.46869 * 60.00510 * 31 30 20 49 49 H 1.09003 * 109.46525 * 180.02562 * 31 30 20 50 50 H 1.08999 * 109.47479 * 300.00042 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 6 4.0456 2.8303 -0.2464 7 7 4.4167 3.9000 -0.3396 8 7 1.6525 2.0974 1.2517 9 6 0.4352 2.6644 1.3669 10 8 -0.3391 2.6327 0.4340 11 6 0.0368 3.3387 2.6544 12 1 0.8411 3.8441 3.1889 13 6 -1.0592 2.6742 3.4901 14 6 -1.6663 1.3758 2.9549 15 6 -1.3583 3.9634 2.7223 16 1 -1.9878 3.8867 1.8358 17 6 -1.5151 5.2303 3.5232 18 8 -0.5551 5.7171 4.0822 19 7 -2.7221 5.8223 3.6183 20 6 -2.8746 7.0536 4.3975 21 1 -1.9739 7.6595 4.2993 22 6 -4.0604 7.8293 3.8840 23 1 -4.6423 7.4434 3.0601 24 6 -4.4027 9.0310 4.4668 25 7 -3.6944 9.5006 5.4704 26 14 -5.8729 9.9920 3.8308 27 1 -6.4974 9.2532 2.7042 28 1 -6.8650 10.1592 4.9230 29 1 -5.4253 11.3274 3.3599 30 6 -3.0944 6.7015 5.8701 31 6 -1.8399 6.0241 6.4251 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 4.0030 0.9835 0.7597 38 1 3.8571 0.8800 -1.0113 39 1 2.2720 2.1232 1.9978 40 1 -0.9758 2.7421 4.5748 41 1 -2.1194 1.5609 1.9810 42 1 -0.8841 0.6232 2.8545 43 1 -2.4277 1.0180 3.6479 44 1 -3.4898 5.4332 3.1711 45 1 -3.9350 10.3462 5.8801 46 1 -3.2962 7.6115 6.4351 47 1 -3.9430 6.0231 5.9586 48 1 -0.9913 6.7024 6.3365 49 1 -1.9967 5.7728 7.4742 50 1 -1.6381 5.1140 5.8602 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294870917.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:46 Heat of formation + Delta-G solvation = -67.155411 kcal Electronic energy + Delta-G solvation = -29426.348195 eV Core-core repulsion = 25452.815478 eV Total energy + Delta-G solvation = -3973.532717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72379 -40.56627 -38.58199 -37.59270 -36.75232 -36.39088 -34.30059 -33.31694 -32.78787 -31.43311 -29.81364 -29.02372 -26.64850 -25.41755 -24.66828 -23.25035 -21.69932 -21.57438 -21.08069 -20.89449 -19.18608 -18.54115 -18.07720 -17.51457 -17.20666 -17.10547 -16.43793 -16.21126 -16.12436 -15.45747 -15.20501 -15.11854 -14.95908 -14.60711 -14.35056 -14.00353 -13.91420 -13.87977 -13.70395 -13.57218 -13.47251 -13.31082 -13.18135 -12.98766 -12.92664 -12.78192 -12.70532 -12.46835 -12.25874 -12.15772 -12.09421 -11.88134 -11.63578 -11.60754 -11.28167 -11.26574 -11.05554 -10.82981 -10.61760 -10.49414 -9.99886 -9.64557 -8.18602 -6.35704 1.36222 1.41384 1.42867 1.54611 1.73037 1.78852 1.85908 2.05568 2.35926 2.65452 2.84008 3.06965 3.10754 3.56772 3.70577 3.75220 3.85536 4.11182 4.19213 4.24202 4.25684 4.32810 4.49325 4.57695 4.59472 4.70683 4.74073 4.76421 4.79817 4.83505 4.92814 4.98150 5.05880 5.09407 5.12473 5.25406 5.25759 5.34044 5.37615 5.43564 5.55242 5.60815 5.61633 5.70102 5.78815 5.91248 6.16023 6.52224 6.66699 6.72458 6.97199 7.27021 7.31227 7.55483 8.86917 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.002478 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.383848 B =11297.479638 C =11629.942785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C 0.145 3.855 4 H 0.070 0.930 5 C -0.025 4.025 6 C 0.226 3.774 7 N -0.510 5.510 8 N -0.715 5.715 9 C 0.554 3.446 10 O -0.557 6.557 11 C -0.163 4.163 12 H 0.125 0.875 13 C -0.067 4.067 14 C -0.122 4.122 15 C -0.165 4.165 16 H 0.132 0.868 17 C 0.527 3.473 18 O -0.586 6.586 19 N -0.701 5.701 20 C 0.278 3.722 21 H -0.004 1.004 22 C -0.549 4.549 23 H 0.069 0.931 24 C 0.016 3.984 25 N -0.914 5.914 26 Si 0.969 3.031 27 H -0.262 1.262 28 H -0.276 1.276 29 H -0.285 1.285 30 C -0.120 4.120 31 C -0.122 4.122 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.414 0.586 40 H 0.120 0.880 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.402 0.598 45 H 0.265 0.735 46 H 0.071 0.929 47 H 0.042 0.958 48 H 0.023 0.977 49 H 0.047 0.953 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.755 -27.810 -8.225 30.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.160 4.160 3 C 0.040 3.960 4 H 0.088 0.912 5 C -0.065 4.065 6 C -0.090 4.090 7 N -0.188 5.188 8 N -0.368 5.368 9 C 0.341 3.659 10 O -0.435 6.435 11 C -0.185 4.185 12 H 0.143 0.857 13 C -0.087 4.087 14 C -0.179 4.179 15 C -0.187 4.187 16 H 0.150 0.850 17 C 0.314 3.686 18 O -0.468 6.468 19 N -0.348 5.348 20 C 0.175 3.825 21 H 0.014 0.986 22 C -0.587 4.587 23 H 0.087 0.913 24 C -0.184 4.184 25 N -0.553 5.553 26 Si 0.794 3.206 27 H -0.186 1.186 28 H -0.201 1.201 29 H -0.211 1.211 30 C -0.159 4.159 31 C -0.179 4.179 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.174 0.826 38 H 0.184 0.816 39 H 0.251 0.749 40 H 0.138 0.862 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.237 0.763 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.042 0.958 49 H 0.066 0.934 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.451 -25.716 -8.534 29.416 hybrid contribution -0.895 1.212 0.032 1.507 sum 10.555 -24.504 -8.502 28.003 Atomic orbital electron populations 1.21927 0.96892 1.00830 1.01875 1.21914 0.95349 0.93537 1.05187 1.21164 0.93071 0.95219 0.86573 0.91174 1.20075 0.93095 0.82921 1.10395 1.30051 0.91874 0.95737 0.91371 1.81342 1.11382 1.14828 1.11230 1.45944 1.15904 1.57348 1.17558 1.19310 0.82125 0.77208 0.87272 1.90702 1.52380 1.59726 1.40694 1.22322 0.93626 1.04231 0.98305 0.85695 1.22483 0.96135 0.91793 0.98258 1.21534 1.01478 0.93484 1.01413 1.22309 1.00573 0.92986 1.02798 0.84994 1.20036 0.82960 0.85170 0.80388 1.90642 1.40137 1.66545 1.49476 1.46200 1.10022 1.26922 1.51671 1.18394 0.95010 0.80823 0.88313 0.98648 1.21614 1.13368 1.05960 1.17763 0.91332 1.25757 0.99639 0.98142 0.94902 1.70050 1.40626 1.20574 1.24004 0.85339 0.78721 0.78032 0.78504 1.18637 1.20121 1.21081 1.21763 0.95845 1.00027 0.98242 1.21668 0.97583 0.99617 0.99081 0.92446 0.93123 0.94579 0.87923 0.88899 0.82626 0.81566 0.74892 0.86214 0.92372 0.90001 0.89965 0.76309 0.92569 0.91075 0.93929 0.95770 0.93355 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.52 71.98 0.61 -1.39 16 2 C -0.12 -0.55 5.61 30.59 0.17 -0.38 16 3 C 0.15 1.19 2.23 44.99 0.10 1.29 16 4 H 0.07 1.03 7.57 -2.39 -0.02 1.01 16 5 C -0.03 -0.03 5.25 28.79 0.15 0.12 16 6 C 0.23 3.31 15.14 89.44 1.35 4.67 16 7 N -0.51 -12.91 18.54 20.01 0.37 -12.54 16 8 N -0.71 -9.27 4.73 -442.55 -2.09 -11.36 16 9 C 0.55 12.20 5.28 87.66 0.46 12.66 16 10 O -0.56 -15.47 12.85 -3.03 -0.04 -15.51 16 11 C -0.16 -4.09 5.70 -11.54 -0.07 -4.15 16 12 H 0.13 3.38 7.67 -2.39 -0.02 3.36 16 13 C -0.07 -1.49 6.11 -10.79 -0.07 -1.56 16 14 C -0.12 -2.03 8.39 71.98 0.60 -1.43 16 15 C -0.17 -4.99 5.35 -11.54 -0.06 -5.05 16 16 H 0.13 3.97 7.58 -2.39 -0.02 3.96 16 17 C 0.53 21.39 6.18 87.66 0.54 21.93 16 18 O -0.59 -27.93 13.40 -3.06 -0.04 -27.97 16 19 N -0.70 -30.08 5.02 -446.07 -2.24 -32.32 16 20 C 0.28 14.60 2.24 44.24 0.10 14.70 16 21 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 22 C -0.55 -29.87 8.73 25.60 0.22 -29.65 16 23 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 24 C 0.02 0.86 5.29 84.65 0.45 1.31 16 25 N -0.91 -53.14 11.29 21.45 0.24 -52.90 16 26 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 27 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 29 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 30 C -0.12 -5.95 5.45 30.60 0.17 -5.78 16 31 C -0.12 -5.45 8.51 71.98 0.61 -4.84 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.80 3.59 -2.39 -0.01 0.80 16 34 H 0.03 0.63 7.85 -2.39 -0.02 0.61 16 35 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.16 -0.87 8.14 -2.38 -0.02 -0.89 16 38 H 0.17 -0.95 8.14 -2.39 -0.02 -0.97 16 39 H 0.41 3.42 8.60 -92.71 -0.80 2.62 16 40 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.06 1.15 7.32 -2.38 -0.02 1.13 16 42 H 0.08 1.07 7.14 -2.39 -0.02 1.05 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.40 15.08 8.54 -92.71 -0.79 14.29 16 45 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.07 3.96 5.95 -2.39 -0.01 3.94 16 47 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 48 H 0.02 1.16 7.85 -2.39 -0.02 1.14 16 49 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 50 H 0.05 2.00 5.65 -2.39 -0.01 1.99 16 Total: -1.00 -82.36 402.88 2.97 -79.40 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.62 Total: 25.59 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.36 Total: 2.45 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -3.72 Total: -109.12 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.08 Total: -43.49 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -82.36 2.97 -79.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294870917.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.241 kcal (2) G-P(sol) polarization free energy of solvation -82.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds