Wall clock time and date at job start Tue Mar 31 2020 18:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09006 * 109.47500 * 54.99635 * 3 2 1 5 5 C 1.50696 * 109.47268 * 174.99506 * 3 2 1 6 6 H 1.08006 * 119.99834 * 119.99517 * 5 3 2 7 7 C 1.37877 * 120.00423 * 300.00347 * 5 3 2 8 8 N 1.31512 * 120.00085 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99738 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46901 * 89.99967 * 9 7 5 11 11 H 1.48501 * 109.47151 * 210.00292 * 9 7 5 12 12 H 1.48500 * 109.47061 * 330.00341 * 9 7 5 13 13 N 1.46500 * 109.47170 * 294.99688 * 3 2 1 14 14 C 1.34785 * 119.99980 * 84.99927 * 13 3 2 15 15 O 1.21283 * 119.99807 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99773 * 180.02562 * 14 13 3 17 17 H 1.09001 * 115.55313 * 34.42091 * 16 14 13 18 18 C 1.53004 * 117.49805 * 248.74395 * 16 14 13 19 19 C 1.53001 * 117.49732 * 145.02217 * 18 16 14 20 20 C 1.53001 * 117.49581 * 180.08723 * 16 14 13 21 21 H 1.08998 * 117.50252 * 0.02562 * 20 16 14 22 22 C 1.50703 * 117.49665 * 215.00163 * 20 16 14 23 23 O 1.21272 * 120.00483 * 0.02562 * 22 20 16 24 24 N 1.34781 * 119.99569 * 179.97438 * 22 20 16 25 25 C 1.46497 * 119.99968 * 180.02562 * 24 22 20 26 26 H 1.09007 * 109.47267 * 325.00096 * 25 24 22 27 27 C 1.52998 * 109.47349 * 84.99821 * 25 24 22 28 28 C 1.52996 * 109.47260 * 295.00762 * 27 25 24 29 29 C 1.52998 * 109.47349 * 205.00549 * 25 24 22 30 30 C 1.47195 * 109.47203 * 64.99634 * 29 25 24 31 31 N 8.96142 * 108.45271 * 174.98213 * 13 1 2 32 32 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 33 33 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 34 34 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 36 36 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 37 37 H 0.97007 * 119.99844 * 179.97438 * 8 7 5 38 38 H 0.96996 * 120.00116 * 265.00375 * 13 3 2 39 39 H 1.09002 * 117.49805 * 0.02562 * 18 16 14 40 40 H 1.09003 * 109.46855 * 8.61333 * 19 18 16 41 41 H 1.08996 * 109.47037 * 128.61102 * 19 18 16 42 42 H 1.08997 * 109.47493 * 248.61373 * 19 18 16 43 43 H 0.97005 * 119.99977 * 0.02562 * 24 22 20 44 44 H 1.09001 * 109.46557 * 55.00477 * 27 25 24 45 45 H 1.08999 * 109.47681 * 175.00024 * 27 25 24 46 46 H 1.09008 * 109.47049 * 179.97438 * 28 27 25 47 47 H 1.09009 * 109.46779 * 299.99261 * 28 27 25 48 48 H 1.08995 * 109.47822 * 59.99254 * 28 27 25 49 49 H 1.09001 * 109.47201 * 185.00367 * 29 25 24 50 50 H 1.09004 * 109.46849 * 304.99600 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 5.4540 0.8796 1.3359 9 14 3.0963 0.1100 2.5708 10 1 2.8745 -1.3260 2.2646 11 1 3.7940 0.2360 3.8756 12 1 1.7880 0.8093 2.6394 13 7 1.6526 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3671 15 8 -0.3392 2.6327 -0.4342 16 6 0.0364 3.3376 -2.6550 17 1 0.4279 2.8819 -3.5645 18 6 -0.1192 4.8596 -2.6378 19 6 0.2861 5.6254 -3.8988 20 6 -1.3578 3.9641 -2.7223 21 1 -1.9865 3.8897 -1.8350 22 6 -2.0847 3.9039 -4.0411 23 8 -1.5621 3.3727 -4.9979 24 7 -3.3160 4.4397 -4.1569 25 6 -4.0229 4.3808 -5.4387 26 1 -3.3056 4.4761 -6.2539 27 6 -4.7541 3.0421 -5.5568 28 6 -3.7317 1.9050 -5.6057 29 6 -5.0365 5.5242 -5.5152 30 6 -4.3238 6.8121 -5.5223 31 7 -3.7717 7.8083 -5.5262 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 0.8900 36 1 1.8933 -0.5138 -0.8899 37 1 5.8771 0.4818 2.1130 38 1 2.2720 2.1231 -1.9978 39 1 0.0672 5.3740 -1.6950 40 1 0.4958 4.9185 -4.7015 41 1 -0.5269 6.2861 -4.1997 42 1 1.1782 6.2172 -3.6936 43 1 -3.7341 4.8643 -3.3915 44 1 -5.4066 2.9072 -4.6941 45 1 -5.3512 3.0333 -6.4687 46 1 -4.2528 0.9512 -5.6894 47 1 -3.0792 2.0399 -6.4685 48 1 -3.1346 1.9136 -4.6939 49 1 -5.6237 5.4288 -6.4285 50 1 -5.6994 5.4805 -4.6509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294870919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:49 Heat of formation + Delta-G solvation = -35.345792 kcal Electronic energy + Delta-G solvation = -29505.401617 eV Core-core repulsion = 25533.248269 eV Total energy + Delta-G solvation = -3972.153348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77043 -39.39049 -37.81381 -36.65432 -35.78616 -35.04935 -32.69549 -32.36218 -31.48808 -31.01706 -28.88984 -27.63390 -25.75608 -24.45183 -22.86888 -22.19101 -21.16144 -20.30918 -20.12182 -19.52668 -18.05437 -17.86854 -16.93153 -16.73815 -16.04374 -15.71750 -15.55691 -14.98541 -14.67971 -14.62379 -14.43812 -14.07702 -13.91681 -13.50747 -13.37735 -13.20135 -13.13423 -12.93882 -12.66132 -12.55998 -12.47099 -12.21430 -12.04685 -11.97499 -11.83672 -11.79659 -11.70561 -11.46997 -11.15143 -11.10200 -10.89509 -10.65171 -10.38788 -10.23063 -9.93482 -9.90684 -9.56685 -9.37460 -9.23227 -9.10660 -8.75325 -8.06692 -6.20842 -4.23277 2.27827 2.29107 2.33807 2.73264 3.00345 3.23316 3.35019 3.39699 3.43044 3.81340 3.95621 4.15170 4.31367 4.50454 4.55330 4.62052 4.67204 4.78113 4.84393 4.92139 5.04919 5.10814 5.12688 5.22105 5.37098 5.48454 5.51232 5.64452 5.65734 5.72638 5.85538 5.88414 5.97209 5.97594 6.03258 6.12056 6.18276 6.20586 6.23724 6.66590 6.69724 6.84559 6.95984 7.11415 7.18966 7.27459 7.30029 7.51547 8.01126 8.15659 8.53654 8.76482 8.93807 9.39940 10.91237 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.002556 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.102954 B =10953.061383 C =11617.375784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.243 3.757 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.693 5.693 14 C 0.532 3.468 15 O -0.552 6.552 16 C -0.146 4.146 17 H 0.133 0.867 18 C -0.095 4.095 19 C -0.128 4.128 20 C -0.167 4.167 21 H 0.135 0.865 22 C 0.554 3.446 23 O -0.527 6.527 24 N -0.728 5.728 25 C 0.149 3.851 26 H 0.098 0.902 27 C -0.132 4.132 28 C -0.148 4.148 29 C -0.034 4.034 30 C 0.198 3.802 31 N -0.425 5.425 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.031 0.969 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.267 0.733 38 H 0.397 0.603 39 H 0.119 0.881 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.402 0.598 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.126 0.874 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.661 6.630 -14.423 27.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.340 5.340 14 C 0.317 3.683 15 O -0.431 6.431 16 C -0.167 4.167 17 H 0.151 0.849 18 C -0.114 4.114 19 C -0.185 4.185 20 C -0.188 4.188 21 H 0.153 0.847 22 C 0.341 3.659 23 O -0.403 6.403 24 N -0.381 5.381 25 C 0.043 3.957 26 H 0.116 0.884 27 C -0.170 4.170 28 C -0.205 4.205 29 C -0.074 4.074 30 C -0.120 4.120 31 N -0.101 5.101 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.230 0.770 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.237 0.763 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.144 0.856 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -21.807 7.653 -14.341 27.199 hybrid contribution -0.564 -0.788 0.856 1.293 sum -22.371 6.864 -13.486 27.008 Atomic orbital electron populations 1.21872 0.96948 0.99023 1.02219 1.22291 0.94374 0.99962 1.01136 1.19162 0.95647 0.88488 0.82759 0.93327 1.21056 0.88604 1.39768 1.07846 0.90144 1.24835 0.94860 0.95153 0.97676 1.69870 1.08683 1.44521 1.29806 0.86904 0.80948 0.79979 0.80899 1.20237 1.22195 1.18479 1.46081 1.14568 1.55304 1.18026 1.19378 0.82616 0.78831 0.87501 1.90653 1.51703 1.60422 1.40345 1.22485 0.98132 0.96469 0.99646 0.84940 1.22397 0.96882 0.90861 1.01297 1.21458 1.01526 0.99984 0.95526 1.22293 0.91457 1.07584 0.97491 0.84682 1.19523 0.80572 0.76841 0.88936 1.90705 1.66822 1.43038 1.39691 1.45980 1.17876 1.60916 1.13333 1.21009 0.93598 0.93264 0.87862 0.88401 1.21953 0.98576 0.93882 1.02630 1.21810 0.98522 0.96741 1.03474 1.19666 0.96919 0.83980 1.06884 1.29169 0.94290 0.94734 0.93793 1.81408 1.08545 1.11961 1.08222 0.92941 0.92877 0.95000 0.92785 0.92243 0.92290 0.76982 0.86294 0.91311 0.92374 0.91327 0.76308 0.91221 0.90629 0.93285 0.92022 0.92096 0.85633 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.52 37.16 0.32 -2.56 16 2 C -0.14 -3.09 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.71 1.83 -69.09 -0.13 5.58 16 4 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 5 C -0.53 -14.39 9.31 -34.44 -0.32 -14.71 16 6 H 0.08 2.28 7.98 -52.48 -0.42 1.86 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 9 Si 0.88 21.70 24.41 -169.99 -4.15 17.55 16 10 H -0.28 -6.57 6.83 56.52 0.39 -6.19 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.69 -13.61 5.02 -54.93 -0.28 -13.89 16 14 C 0.53 9.67 6.18 -10.98 -0.07 9.60 16 15 O -0.55 -11.45 13.40 5.55 0.07 -11.38 16 16 C -0.15 -2.06 5.34 -91.77 -0.49 -2.55 16 17 H 0.13 1.84 7.58 -51.93 -0.39 1.45 16 18 C -0.10 -1.15 6.11 -90.58 -0.55 -1.71 16 19 C -0.13 -1.41 9.18 37.16 0.34 -1.06 16 20 C -0.17 -1.99 5.70 -91.73 -0.52 -2.51 16 21 H 0.14 1.61 7.67 -51.93 -0.40 1.21 16 22 C 0.55 5.93 5.26 -10.98 -0.06 5.87 16 23 O -0.53 -6.96 12.85 5.56 0.07 -6.89 16 24 N -0.73 -5.04 4.73 -53.81 -0.25 -5.30 16 25 C 0.15 0.75 2.23 -67.93 -0.15 0.60 16 26 H 0.10 0.69 7.58 -51.93 -0.39 0.30 16 27 C -0.13 -0.62 5.61 -26.73 -0.15 -0.77 16 28 C -0.15 -1.24 8.51 37.16 0.32 -0.92 16 29 C -0.03 -0.07 5.25 -29.52 -0.16 -0.23 16 30 C 0.20 1.33 15.15 -20.66 -0.31 1.02 16 31 N -0.42 -4.52 18.56 42.27 0.78 -3.73 16 32 H 0.05 1.10 7.85 -51.93 -0.41 0.70 16 33 H 0.05 1.05 5.65 -51.93 -0.29 0.75 16 34 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 1.26 3.22 -51.93 -0.17 1.09 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.40 7.04 8.54 -40.82 -0.35 6.70 16 39 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.07 0.81 7.42 -51.93 -0.39 0.43 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.40 1.98 8.60 -40.82 -0.35 1.63 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 46 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 47 H 0.06 0.59 7.85 -51.92 -0.41 0.18 16 48 H 0.06 0.66 5.64 -51.93 -0.29 0.37 16 49 H 0.13 -0.06 8.14 -51.93 -0.42 -0.49 16 50 H 0.12 -0.02 8.14 -51.93 -0.42 -0.44 16 LS Contribution 400.08 15.07 6.03 6.03 Total: -1.00 -34.70 400.08 -7.13 -41.83 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.01 Total: 6.89 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.17 Total: -5.47 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 1.03 Total: -48.56 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: 0.15 Total: -18.27 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.15 Total: 17.55 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.70 -7.13 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294870919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.487 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds