Wall clock time and date at job start Tue Mar 31 2020 18:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09006 * 109.47500 * 54.99635 * 3 2 1 5 5 C 1.50696 * 109.47268 * 174.99506 * 3 2 1 6 6 H 1.08006 * 119.99834 * 119.99517 * 5 3 2 7 7 C 1.37877 * 120.00423 * 300.00347 * 5 3 2 8 8 N 1.31512 * 120.00085 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99738 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.46901 * 89.99967 * 9 7 5 11 11 H 1.48501 * 109.47151 * 210.00292 * 9 7 5 12 12 H 1.48500 * 109.47061 * 330.00341 * 9 7 5 13 13 N 1.46500 * 109.47170 * 294.99688 * 3 2 1 14 14 C 1.34785 * 119.99980 * 84.99927 * 13 3 2 15 15 O 1.21283 * 119.99807 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99773 * 180.02562 * 14 13 3 17 17 H 1.09001 * 115.55313 * 34.42091 * 16 14 13 18 18 C 1.53004 * 117.49805 * 248.74395 * 16 14 13 19 19 C 1.53001 * 117.49732 * 145.02217 * 18 16 14 20 20 C 1.53001 * 117.49581 * 180.08723 * 16 14 13 21 21 H 1.08998 * 117.50252 * 0.02562 * 20 16 14 22 22 C 1.50703 * 117.49665 * 215.00163 * 20 16 14 23 23 O 1.21272 * 120.00483 * 0.02562 * 22 20 16 24 24 N 1.34781 * 119.99569 * 179.97438 * 22 20 16 25 25 C 1.46497 * 119.99968 * 180.02562 * 24 22 20 26 26 H 1.09007 * 109.47267 * 325.00096 * 25 24 22 27 27 C 1.52998 * 109.47349 * 84.99821 * 25 24 22 28 28 C 1.52996 * 109.47260 * 295.00762 * 27 25 24 29 29 C 1.52998 * 109.47349 * 205.00549 * 25 24 22 30 30 C 1.47195 * 109.47203 * 64.99634 * 29 25 24 31 31 N 8.96142 * 108.45271 * 174.98213 * 13 1 2 32 32 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 33 33 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 34 34 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 36 36 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 37 37 H 0.97007 * 119.99844 * 179.97438 * 8 7 5 38 38 H 0.96996 * 120.00116 * 265.00375 * 13 3 2 39 39 H 1.09002 * 117.49805 * 0.02562 * 18 16 14 40 40 H 1.09003 * 109.46855 * 8.61333 * 19 18 16 41 41 H 1.08996 * 109.47037 * 128.61102 * 19 18 16 42 42 H 1.08997 * 109.47493 * 248.61373 * 19 18 16 43 43 H 0.97005 * 119.99977 * 0.02562 * 24 22 20 44 44 H 1.09001 * 109.46557 * 55.00477 * 27 25 24 45 45 H 1.08999 * 109.47681 * 175.00024 * 27 25 24 46 46 H 1.09008 * 109.47049 * 179.97438 * 28 27 25 47 47 H 1.09009 * 109.46779 * 299.99261 * 28 27 25 48 48 H 1.08995 * 109.47822 * 59.99254 * 28 27 25 49 49 H 1.09001 * 109.47201 * 185.00367 * 29 25 24 50 50 H 1.09004 * 109.46849 * 304.99600 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1433 0.8784 1.2281 8 7 5.4540 0.8796 1.3359 9 14 3.0963 0.1100 2.5708 10 1 2.8745 -1.3260 2.2646 11 1 3.7940 0.2360 3.8756 12 1 1.7880 0.8093 2.6394 13 7 1.6526 2.0974 -1.2518 14 6 0.4352 2.6644 -1.3671 15 8 -0.3392 2.6327 -0.4342 16 6 0.0364 3.3376 -2.6550 17 1 0.4279 2.8819 -3.5645 18 6 -0.1192 4.8596 -2.6378 19 6 0.2861 5.6254 -3.8988 20 6 -1.3578 3.9641 -2.7223 21 1 -1.9865 3.8897 -1.8350 22 6 -2.0847 3.9039 -4.0411 23 8 -1.5621 3.3727 -4.9979 24 7 -3.3160 4.4397 -4.1569 25 6 -4.0229 4.3808 -5.4387 26 1 -3.3056 4.4761 -6.2539 27 6 -4.7541 3.0421 -5.5568 28 6 -3.7317 1.9050 -5.6057 29 6 -5.0365 5.5242 -5.5152 30 6 -4.3238 6.8121 -5.5223 31 7 -3.7717 7.8083 -5.5262 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 0.8900 36 1 1.8933 -0.5138 -0.8899 37 1 5.8771 0.4818 2.1130 38 1 2.2720 2.1231 -1.9978 39 1 0.0672 5.3740 -1.6950 40 1 0.4958 4.9185 -4.7015 41 1 -0.5269 6.2861 -4.1997 42 1 1.1782 6.2172 -3.6936 43 1 -3.7341 4.8643 -3.3915 44 1 -5.4066 2.9072 -4.6941 45 1 -5.3512 3.0333 -6.4687 46 1 -4.2528 0.9512 -5.6894 47 1 -3.0792 2.0399 -6.4685 48 1 -3.1346 1.9136 -4.6939 49 1 -5.6237 5.4288 -6.4285 50 1 -5.6994 5.4805 -4.6509 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294870919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:48 Heat of formation + Delta-G solvation = -60.164570 kcal Electronic energy + Delta-G solvation = -29506.477840 eV Core-core repulsion = 25533.248269 eV Total energy + Delta-G solvation = -3973.229571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.73261 -40.63543 -38.63765 -37.63953 -36.81856 -36.36466 -34.39624 -33.34725 -33.15179 -31.44736 -29.97225 -29.41049 -26.68189 -25.30394 -24.50172 -23.44605 -21.84863 -21.67611 -21.15704 -20.92535 -19.33409 -18.52974 -18.22510 -17.59650 -17.48454 -17.03050 -16.67849 -16.22811 -16.12692 -15.36108 -15.29777 -15.06544 -14.98686 -14.90179 -14.53636 -14.23860 -14.01375 -13.89120 -13.78096 -13.72139 -13.60258 -13.54420 -13.42041 -12.98206 -12.96194 -12.86607 -12.76376 -12.43332 -12.40220 -12.32939 -11.89979 -11.86591 -11.63559 -11.43580 -11.39302 -11.31273 -11.23728 -10.87673 -10.82840 -10.61547 -9.99638 -9.77394 -8.38516 -6.44336 1.26809 1.34155 1.34555 1.44467 1.66835 1.79865 1.87185 2.02274 2.25530 2.52078 2.81646 2.97351 3.07788 3.54046 3.63646 3.73439 3.83135 4.04876 4.11970 4.21117 4.23217 4.24021 4.26657 4.32024 4.48033 4.55823 4.66677 4.67587 4.72659 4.80128 4.82396 4.88130 4.97525 4.99580 5.00920 5.06432 5.11453 5.19740 5.22544 5.24394 5.32121 5.40068 5.51003 5.57244 5.62548 5.65576 6.13471 6.52628 6.57718 6.68968 6.87066 7.18374 7.27251 7.43275 8.76816 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.002556 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.102954 B =10953.061383 C =11617.375784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C 0.251 3.749 4 H 0.026 0.974 5 C -0.534 4.534 6 H 0.054 0.946 7 C 0.028 3.972 8 N -0.935 5.935 9 Si 0.938 3.062 10 H -0.260 1.260 11 H -0.293 1.293 12 H -0.257 1.257 13 N -0.697 5.697 14 C 0.535 3.465 15 O -0.576 6.576 16 C -0.158 4.158 17 H 0.135 0.865 18 C -0.085 4.085 19 C -0.119 4.119 20 C -0.153 4.153 21 H 0.138 0.862 22 C 0.554 3.446 23 O -0.556 6.556 24 N -0.715 5.715 25 C 0.147 3.853 26 H 0.077 0.923 27 C -0.124 4.124 28 C -0.149 4.149 29 C -0.025 4.025 30 C 0.226 3.774 31 N -0.502 5.502 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.270 0.730 38 H 0.405 0.595 39 H 0.118 0.882 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.414 0.586 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.052 0.948 47 H 0.042 0.958 48 H 0.031 0.969 49 H 0.166 0.834 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.406 6.431 -15.117 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 C 0.146 3.854 4 H 0.044 0.956 5 C -0.572 4.572 6 H 0.072 0.928 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.765 3.235 10 H -0.186 1.186 11 H -0.221 1.221 12 H -0.182 1.182 13 N -0.345 5.345 14 C 0.322 3.678 15 O -0.457 6.457 16 C -0.179 4.179 17 H 0.152 0.848 18 C -0.105 4.105 19 C -0.176 4.176 20 C -0.175 4.175 21 H 0.156 0.844 22 C 0.340 3.660 23 O -0.434 6.434 24 N -0.368 5.368 25 C 0.042 3.958 26 H 0.095 0.905 27 C -0.162 4.162 28 C -0.207 4.207 29 C -0.065 4.065 30 C -0.090 4.090 31 N -0.180 5.180 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.239 0.761 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.251 0.749 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.050 0.950 49 H 0.183 0.817 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -25.599 7.476 -15.057 30.625 hybrid contribution 0.591 -0.709 0.996 1.358 sum -25.008 6.766 -14.061 29.477 Atomic orbital electron populations 1.21751 0.95044 1.00582 1.01603 1.22218 0.96014 0.98498 1.00970 1.18801 0.93167 0.89655 0.83770 0.95640 1.21293 0.90413 1.38596 1.06929 0.92790 1.25575 0.95773 0.95860 0.99922 1.69984 1.10341 1.46155 1.30863 0.86012 0.79366 0.79934 0.78200 1.18587 1.22051 1.18190 1.45957 1.15626 1.55792 1.17084 1.19894 0.81511 0.77911 0.88481 1.90631 1.52203 1.61189 1.41692 1.22267 1.00723 0.97662 0.97276 0.84755 1.22444 0.96802 0.89418 1.01787 1.21388 1.02041 0.99662 0.94547 1.22369 0.90808 1.05722 0.98581 0.84414 1.19310 0.81635 0.77115 0.87895 1.90704 1.67822 1.44583 1.40285 1.45941 1.16614 1.59434 1.14770 1.21129 0.93723 0.95013 0.85949 0.90528 1.21929 0.97693 0.91543 1.05013 1.21787 0.98986 0.98801 1.01104 1.20004 0.95972 0.79948 1.10544 1.30007 0.92745 0.94845 0.91434 1.81442 1.10871 1.14611 1.11056 0.94128 0.92887 0.92311 0.93695 0.91601 0.92076 0.76066 0.86407 0.92157 0.91883 0.90504 0.74877 0.89429 0.87586 0.92892 0.93923 0.94953 0.81686 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 8.52 71.98 0.61 -4.49 16 2 C -0.14 -6.02 5.11 30.60 0.16 -5.87 16 3 C 0.25 11.88 1.83 44.24 0.08 11.96 16 4 H 0.03 1.34 6.63 -2.38 -0.02 1.33 16 5 C -0.53 -29.42 9.31 25.60 0.24 -29.18 16 6 H 0.05 3.18 7.98 -2.91 -0.02 3.16 16 7 C 0.03 1.61 5.45 84.66 0.46 2.07 16 8 N -0.93 -56.57 13.96 21.45 0.30 -56.27 16 9 Si 0.94 44.87 24.41 68.60 1.67 46.55 16 10 H -0.26 -11.73 6.83 99.48 0.68 -11.05 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 12 H -0.26 -12.11 6.53 99.48 0.65 -11.46 16 13 N -0.70 -27.70 5.02 -446.09 -2.24 -29.94 16 14 C 0.53 19.45 6.18 87.65 0.54 20.00 16 15 O -0.58 -23.77 13.40 -3.04 -0.04 -23.81 16 16 C -0.16 -4.44 5.34 -11.54 -0.06 -4.50 16 17 H 0.13 3.76 7.58 -2.39 -0.02 3.74 16 18 C -0.09 -2.01 6.11 -10.77 -0.07 -2.08 16 19 C -0.12 -2.54 9.18 71.98 0.66 -1.88 16 20 C -0.15 -3.52 5.70 -11.51 -0.07 -3.58 16 21 H 0.14 3.11 7.67 -2.39 -0.02 3.09 16 22 C 0.55 11.27 5.26 87.66 0.46 11.73 16 23 O -0.56 -14.56 12.85 -3.01 -0.04 -14.60 16 24 N -0.71 -8.24 4.73 -442.54 -2.09 -10.33 16 25 C 0.15 1.02 2.23 44.99 0.10 1.12 16 26 H 0.08 0.94 7.58 -2.38 -0.02 0.92 16 27 C -0.12 -0.69 5.61 30.59 0.17 -0.52 16 28 C -0.15 -2.29 8.51 71.98 0.61 -1.68 16 29 C -0.03 0.01 5.25 28.79 0.15 0.16 16 30 C 0.23 2.49 15.15 89.41 1.35 3.84 16 31 N -0.50 -10.24 18.56 20.04 0.37 -9.87 16 32 H 0.04 1.64 7.85 -2.39 -0.02 1.62 16 33 H 0.05 2.02 5.65 -2.39 -0.01 2.01 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.04 2.03 3.22 -2.39 -0.01 2.03 16 36 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 37 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 38 H 0.40 14.70 8.54 -92.71 -0.79 13.91 16 39 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.06 1.41 7.42 -2.39 -0.02 1.39 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.41 2.81 8.60 -92.70 -0.80 2.01 16 44 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 47 H 0.04 0.80 7.85 -2.38 -0.02 0.78 16 48 H 0.03 0.68 5.64 -2.39 -0.01 0.66 16 49 H 0.17 -1.17 8.14 -2.39 -0.02 -1.19 16 50 H 0.15 -1.00 8.14 -2.39 -0.02 -1.02 16 Total: -1.00 -79.32 400.08 2.64 -76.68 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.70 Total: 24.50 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.41 Total: -2.90 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -3.66 Total: -106.41 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.08 Total: -38.42 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.67 Total: 46.55 kcal Total: -79.32 2.64 -76.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294870919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.515 kcal (2) G-P(sol) polarization free energy of solvation -79.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds