Wall clock time and date at job start Tue Mar 31 2020 19:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46925 * 2 1 4 4 N 1.46501 * 109.47221 * 119.99732 * 2 1 3 5 5 N 1.40081 * 126.03517 * 294.35699 * 4 2 1 6 6 C 1.30842 * 108.20057 * 180.23437 * 5 4 2 7 7 C 1.39864 * 108.20509 * 359.78141 * 6 5 4 8 8 C 1.34946 * 126.03688 * 114.20283 * 4 2 1 9 9 C 1.50698 * 126.12515 * 0.03841 * 8 4 2 10 10 H 1.09002 * 110.42234 * 332.16046 * 9 8 4 11 11 O 1.44430 * 110.37338 * 209.84854 * 9 8 4 12 12 C 1.44418 * 105.27665 * 200.65681 * 11 9 8 13 13 C 1.54791 * 104.85930 * 40.46164 * 12 11 9 14 14 C 1.54480 * 110.37670 * 94.46930 * 9 8 4 15 15 H 1.08998 * 110.51189 * 261.59364 * 14 9 8 16 16 C 1.50703 * 110.50765 * 24.16097 * 14 9 8 17 17 O 1.21282 * 119.99858 * 83.69861 * 16 14 9 18 18 N 1.34776 * 120.00096 * 263.69276 * 16 14 9 19 19 C 1.46499 * 119.99808 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47012 * 180.02562 * 19 18 16 21 21 C 1.53002 * 109.47279 * 180.02562 * 20 19 18 22 22 C 1.50696 * 109.47415 * 179.97438 * 21 20 19 23 23 H 1.08004 * 119.99432 * 359.72894 * 22 21 20 24 24 C 1.37878 * 120.00236 * 180.02562 * 22 21 20 25 25 N 1.31507 * 120.00105 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99919 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47011 * 89.99711 * 26 24 22 28 28 H 1.48494 * 109.47392 * 209.99970 * 26 24 22 29 29 H 1.48503 * 109.47211 * 330.00509 * 26 24 22 30 30 H 1.08999 * 109.46482 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46952 * 299.99713 * 1 2 3 32 32 H 1.08999 * 109.47145 * 60.00335 * 1 2 3 33 33 H 1.08998 * 109.47434 * 240.00425 * 2 1 3 34 34 H 1.08995 * 109.47193 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.46936 * 299.99794 * 3 2 1 36 36 H 1.09001 * 109.47106 * 59.99650 * 3 2 1 37 37 H 1.08005 * 125.89990 * 179.74502 * 6 5 4 38 38 H 1.08000 * 126.04462 * 179.97438 * 7 6 5 39 39 H 1.08999 * 110.37543 * 159.34253 * 12 11 9 40 40 H 1.09000 * 110.37101 * 281.56938 * 12 11 9 41 41 H 1.08999 * 110.61462 * 217.51385 * 13 12 11 42 42 H 1.09002 * 110.56068 * 94.69947 * 13 12 11 43 43 H 0.96997 * 120.00125 * 0.02562 * 18 16 14 44 44 H 1.09005 * 109.47290 * 60.00418 * 19 18 16 45 45 H 1.09002 * 109.47439 * 300.00174 * 19 18 16 46 46 H 1.08997 * 109.47402 * 59.99835 * 20 19 18 47 47 H 1.09002 * 109.46777 * 300.00109 * 20 19 18 48 48 H 1.09006 * 109.46686 * 60.00006 * 21 20 19 49 49 H 1.08999 * 109.46833 * 300.00381 * 21 20 19 50 50 H 0.97004 * 120.00417 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.8526 -0.2631 2.5199 6 6 2.4280 -1.1363 3.3063 7 6 2.9734 -2.1487 2.5103 8 6 2.7048 -1.8522 1.2177 9 6 3.1061 -2.6693 0.0167 10 1 2.4039 -2.5123 -0.8020 11 8 3.1718 -4.0705 0.3611 12 6 4.0104 -4.6717 -0.6493 13 6 5.1508 -3.6503 -0.8779 14 6 4.5400 -2.3045 -0.4273 15 1 4.5148 -1.5993 -1.2580 16 6 5.3203 -1.7306 0.7272 17 8 5.8661 -2.4708 1.5178 18 7 5.4118 -0.3948 0.8810 19 6 6.1708 0.1631 2.0030 20 6 6.1161 1.6911 1.9462 21 6 6.9093 2.2737 3.1176 22 6 6.8560 3.7787 3.0613 23 1 6.3144 4.2705 2.2667 24 6 7.5036 4.5279 4.0207 25 7 7.4566 5.8412 3.9719 26 14 8.4477 3.6774 5.3899 27 1 9.8539 3.4639 4.9629 28 1 8.4237 4.5254 6.6086 29 1 7.8161 2.3664 5.6864 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.4744 -1.0839 4.3841 38 1 3.5138 -3.0141 2.8646 39 1 4.4149 -5.6188 -0.2923 40 1 3.4463 -4.8236 -1.5695 41 1 5.4253 -3.6111 -1.9320 42 1 6.0173 -3.9005 -0.2657 43 1 4.9751 0.1973 0.2488 44 1 7.2080 -0.1663 1.9396 45 1 5.7371 -0.1810 2.9419 46 1 5.0789 2.0202 2.0098 47 1 6.5496 2.0355 1.0072 48 1 7.9465 1.9446 3.0534 49 1 6.4763 1.9293 4.0567 50 1 7.9125 6.3683 4.6466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339939589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:14 Heat of formation + Delta-G solvation = -13.375407 kcal Electronic energy + Delta-G solvation = -30803.277394 eV Core-core repulsion = 26832.076753 eV Total energy + Delta-G solvation = -3971.200641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.68231 -40.13324 -38.47995 -35.82319 -35.46474 -33.35261 -32.69692 -31.82538 -31.31361 -29.83910 -28.31508 -27.52758 -27.10332 -24.33264 -23.11770 -23.03488 -21.88989 -20.72305 -20.59870 -20.04072 -19.17031 -17.83825 -16.95560 -16.80884 -16.42555 -15.68842 -15.63442 -15.35640 -15.02751 -14.92891 -14.76454 -14.21648 -14.11585 -13.94095 -13.61763 -13.41589 -13.05495 -12.80370 -12.71774 -12.45264 -12.29874 -12.28301 -12.06930 -11.92132 -11.82655 -11.68489 -11.61068 -11.48981 -11.38436 -11.04902 -10.87826 -10.53600 -10.26630 -10.11290 -9.94111 -9.75795 -9.50158 -9.25849 -9.21497 -8.79928 -8.54321 -8.44188 -6.05278 -4.03655 1.77756 2.32719 2.64671 2.94985 3.25574 3.32102 3.39756 3.44699 3.56236 3.98790 4.19099 4.34266 4.45656 4.47881 4.61199 4.64462 4.66972 4.73688 4.83682 4.97366 4.98920 5.06227 5.27229 5.29049 5.34567 5.41794 5.43000 5.44813 5.52988 5.61116 5.68471 5.69949 5.77596 5.82621 5.88864 6.03397 6.06744 6.18198 6.38680 6.42935 6.47419 6.71403 6.76047 6.81698 6.99865 7.24018 7.38112 7.63809 7.76740 7.77959 8.35182 8.51537 8.98288 9.57244 11.08020 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003516 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.603381 B = 7961.035614 C = 9030.307036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.154 3.846 3 C -0.161 4.161 4 N -0.356 5.356 5 N -0.273 5.273 6 C 0.042 3.958 7 C -0.220 4.220 8 C 0.061 3.939 9 C 0.162 3.838 10 H 0.085 0.915 11 O -0.348 6.348 12 C 0.047 3.953 13 C -0.141 4.141 14 C -0.141 4.141 15 H 0.102 0.898 16 C 0.526 3.474 17 O -0.530 6.530 18 N -0.719 5.719 19 C 0.119 3.881 20 C -0.111 4.111 21 C -0.009 4.009 22 C -0.520 4.520 23 H 0.071 0.929 24 C 0.067 3.933 25 N -0.903 5.903 26 Si 0.879 3.121 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.264 1.264 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.181 0.819 38 H 0.147 0.853 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.392 0.608 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.013 0.987 49 H 0.018 0.982 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.540 -19.184 -14.453 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 C -0.219 4.219 4 N -0.142 5.142 5 N -0.094 5.094 6 C -0.144 4.144 7 C -0.250 4.250 8 C -0.066 4.066 9 C 0.102 3.898 10 H 0.103 0.897 11 O -0.266 6.266 12 C -0.029 4.029 13 C -0.179 4.179 14 C -0.163 4.163 15 H 0.120 0.880 16 C 0.310 3.690 17 O -0.406 6.406 18 N -0.369 5.369 19 C -0.004 4.004 20 C -0.149 4.149 21 C -0.047 4.047 22 C -0.558 4.558 23 H 0.089 0.911 24 C -0.134 4.134 25 N -0.542 5.542 26 Si 0.706 3.294 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.189 1.189 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.198 0.802 38 H 0.165 0.835 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.226 0.774 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.031 0.969 49 H 0.037 0.963 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.881 -18.493 -13.763 26.407 hybrid contribution 0.922 -0.567 0.309 1.126 sum -11.959 -19.060 -13.455 26.217 Atomic orbital electron populations 1.22158 0.93414 1.02756 1.03612 1.21312 0.95545 0.94414 0.83543 1.22131 1.01985 0.93868 1.03892 1.48662 1.42880 1.16850 1.05781 1.77370 1.23320 1.22558 0.86121 1.23849 0.97586 0.92736 1.00218 1.21246 1.09425 1.03362 0.90937 1.20283 1.00097 0.89989 0.96211 1.20959 0.93963 0.82566 0.92358 0.89697 1.89235 1.69823 1.17831 1.49679 1.23501 0.90374 0.97411 0.91662 1.23013 1.00424 0.91877 1.02540 1.22810 0.95539 0.99730 0.98269 0.87958 1.19856 0.80475 0.82568 0.86067 1.90681 1.46711 1.58814 1.44424 1.46100 1.54124 1.06215 1.30503 1.21592 0.95286 0.95095 0.88381 1.21672 1.01401 0.90700 1.01078 1.19479 0.94807 0.96978 0.93431 1.21074 1.33207 0.89093 1.12411 0.91122 1.25013 0.96011 0.94701 0.97683 1.69908 1.44003 1.04721 1.35609 0.86788 0.80630 0.80091 0.81883 1.20279 1.21347 1.18870 0.92271 0.90905 0.90704 0.88891 0.91900 0.90682 0.90418 0.80181 0.83525 0.88276 0.91922 0.89714 0.88480 0.77417 0.92001 0.91815 0.92281 0.92456 0.96892 0.96336 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.51 37.16 0.35 -0.90 16 2 C 0.15 1.34 3.63 -67.93 -0.25 1.10 16 3 C -0.16 -1.49 9.37 37.16 0.35 -1.14 16 4 N -0.36 -4.27 3.29 -50.69 -0.17 -4.44 16 5 N -0.27 -3.99 12.40 30.63 0.38 -3.61 16 6 C 0.04 0.59 12.03 -17.36 -0.21 0.39 16 7 C -0.22 -3.17 9.06 -40.02 -0.36 -3.53 16 8 C 0.06 0.76 4.86 -82.27 -0.40 0.36 16 9 C 0.16 1.63 3.24 -27.11 -0.09 1.54 16 10 H 0.09 0.64 7.16 -51.93 -0.37 0.26 16 11 O -0.35 -3.97 11.01 -35.23 -0.39 -4.36 16 12 C 0.05 0.37 7.64 38.10 0.29 0.66 16 13 C -0.14 -1.16 6.62 -25.00 -0.17 -1.33 16 14 C -0.14 -1.36 3.41 -90.20 -0.31 -1.66 16 15 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 16 C 0.53 7.25 4.66 -10.98 -0.05 7.20 16 17 O -0.53 -9.24 15.50 5.56 0.09 -9.16 16 18 N -0.72 -9.96 5.46 -60.29 -0.33 -10.29 16 19 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 20 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 21 C -0.01 -0.21 4.04 -27.88 -0.11 -0.33 16 22 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 23 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 24 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 25 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 26 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.58 6.73 -51.93 -0.35 0.23 16 34 H 0.06 0.63 7.54 -51.93 -0.39 0.24 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.18 2.19 8.06 -52.48 -0.42 1.77 16 38 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 1.02 6.95 -51.93 -0.36 0.66 16 43 H 0.39 4.64 7.87 -40.82 -0.32 4.32 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 49 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 50 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 403.26 15.07 6.08 6.08 Total: -1.00 -35.19 403.26 -8.27 -43.46 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.49 Total: 3.32 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.54 Total: -11.17 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.66 Total: -45.53 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.30 Total: -13.51 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.19 -8.27 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339939589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.085 kcal (2) G-P(sol) polarization free energy of solvation -35.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds